# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_3 - 475 AAA_22 PF13401.1 131 8.2e-06 14.7 0.0 1 2 0.00047 0.0024 6.8 0.0 3 20 18 35 16 95 0.87 # 1213 # 2637 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.325 1_3 - 475 AAA_22 PF13401.1 131 8.2e-06 14.7 0.0 2 2 0.0013 0.0067 5.3 0.0 80 121 341 384 279 393 0.71 # 1213 # 2637 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.325 1_3 - 475 AAA_15 PF13175.1 415 2.4e-11 31.9 15.7 1 3 0.0035 0.017 2.7 0.7 13 36 12 33 2 36 0.67 # 1213 # 2637 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.325 1_3 - 475 AAA_15 PF13175.1 415 2.4e-11 31.9 15.7 2 3 0.035 0.17 -0.6 7.5 239 321 69 158 34 164 0.64 # 1213 # 2637 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.325 1_3 - 475 AAA_15 PF13175.1 415 2.4e-11 31.9 15.7 3 3 4.8e-12 2.4e-11 31.9 15.7 207 415 157 392 140 392 0.72 # 1213 # 2637 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.325 1_3 - 475 AAA_21 PF13304.1 303 1.2e-20 63.2 22.8 1 1 3.4e-20 1.7e-19 59.4 22.8 1 302 21 392 21 393 0.77 # 1213 # 2637 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.325 1_3 - 475 PhoH PF02562.11 205 4.7e-06 14.6 0.1 1 2 2.6e-05 0.00013 9.9 0.0 15 52 15 54 10 91 0.82 # 1213 # 2637 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.325 1_3 - 475 PhoH PF02562.11 205 4.7e-06 14.6 0.1 2 2 0.0088 0.044 1.6 0.0 119 158 347 391 339 417 0.72 # 1213 # 2637 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.325 1_3 - 475 SMC_N PF02463.14 220 4.9e-06 14.5 4.9 1 2 0.0033 0.017 3.0 0.1 23 42 18 37 4 55 0.83 # 1213 # 2637 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.325 1_3 - 475 SMC_N PF02463.14 220 4.9e-06 14.5 4.9 2 2 3.5e-06 1.7e-05 12.7 1.4 72 212 119 402 97 409 0.78 # 1213 # 2637 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.325 1_3 - 475 Arch_ATPase PF01637.13 234 1.6e-05 13.3 4.4 1 1 1.5e-05 7.7e-05 11.1 4.3 18 44 17 43 6 262 0.79 # 1213 # 2637 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.325 1_3 - 475 AAA_23 PF13476.1 202 0.0016 7.4 21.5 1 1 0.0017 0.0084 5.1 21.4 2 144 3 182 2 428 0.62 # 1213 # 2637 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.325 1_3 - 475 AAA_14 PF13173.1 128 6.8e-08 21.2 1.3 1 3 1.8e-05 9e-05 11.1 0.0 2 24 19 41 18 99 0.86 # 1213 # 2637 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.325 1_3 - 475 AAA_14 PF13173.1 128 6.8e-08 21.2 1.3 2 3 0.065 0.33 -0.4 0.0 50 70 223 242 179 289 0.54 # 1213 # 2637 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.325 1_3 - 475 AAA_14 PF13173.1 128 6.8e-08 21.2 1.3 3 3 0.0004 0.002 6.8 0.1 29 102 306 392 271 414 0.64 # 1213 # 2637 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.325 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/89b31439-50ad-4b1d-b1c5-9f4040e8bfab # Target file: checkm_output/bins/pm809/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm809/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/89b31439-50ad-4b1d-b1c5-9f4040e8bfab checkm_output/bins/pm809/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 17:09:55 2020 # [ok]