# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 12_1 - 254 Mg_chelatase PF01078.16 207 0.00034 12.5 0.0 1 1 6.4e-06 0.00057 11.8 0.0 23 42 98 117 84 147 0.91 # 2 # 763 # -1 # ID=12_1;partial=10;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.555 2_6 - 188 Methyltransf_12 PF08242.7 99 5.8e-05 16.3 0.0 1 1 1.2e-06 0.00011 15.5 0.0 1 99 55 144 55 144 0.84 # 2892 # 3455 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.590 2_6 - 188 RrnaAD PF00398.15 262 3.8e-09 28.6 0.0 1 1 5.5e-11 4.9e-09 28.3 0.0 9 113 29 128 24 148 0.89 # 2892 # 3455 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.590 12_1 - 254 IstB_IS21 PF01695.12 178 3.3e-75 244.1 0.3 1 1 2.2e-76 6.6e-75 243.1 0.0 1 177 51 227 51 228 0.99 # 2 # 763 # -1 # ID=12_1;partial=10;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.555 13_1 - 53 IstB_IS21 PF01695.12 178 0.00022 13.4 0.4 1 1 1.1e-05 0.00033 12.8 0.4 163 177 1 15 1 16 0.91 # 1 # 159 # 1 # ID=13_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.497 2_1 - 53 IstB_IS21 PF01695.12 178 0.00022 13.4 0.4 1 1 1.1e-05 0.00033 12.8 0.4 163 177 1 15 1 16 0.91 # 1 # 159 # 1 # ID=2_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.497 5_5 - 389 MipZ PF09140.6 261 3.8e-06 18.8 0.4 1 2 3.5e-06 0.00031 12.6 0.0 2 47 108 153 107 157 0.87 # 3239 # 4405 # -1 # ID=5_5;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.472 5_5 - 389 MipZ PF09140.6 261 3.8e-06 18.8 0.4 2 2 0.0011 0.1 4.4 0.0 88 134 224 270 197 292 0.84 # 3239 # 4405 # -1 # ID=5_5;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.472 2_6 - 188 Methyltransf_18 PF12847.2 112 6.8e-10 32.3 0.0 1 1 1.5e-11 1.4e-09 31.3 0.0 4 109 53 146 50 148 0.89 # 2892 # 3455 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.590 3_6 - 682 UvrD_C_2 PF13538.1 104 6.8e-07 22.2 0.1 1 1 1.6e-08 1.4e-06 21.2 0.1 51 103 482 542 449 543 0.72 # 2662 # 4707 # -1 # ID=3_6;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.558 12_1 - 254 AAA_22 PF13401.1 131 2.5e-07 23.7 0.1 1 2 3.3e-05 0.0015 11.5 0.0 5 24 98 117 94 137 0.83 # 2 # 763 # -1 # ID=12_1;partial=10;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.555 12_1 - 254 AAA_22 PF13401.1 131 2.5e-07 23.7 0.1 2 2 8.5e-05 0.0038 10.1 0.0 77 121 147 195 116 203 0.72 # 2 # 763 # -1 # ID=12_1;partial=10;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.555 9_1 - 524 AAA_22 PF13401.1 131 0.0018 11.2 1.2 1 2 0.054 2.4 1.1 0.4 38 88 30 79 10 99 0.74 # 31 # 1602 # -1 # ID=9_1;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.564 9_1 - 524 AAA_22 PF13401.1 131 0.0018 11.2 1.2 2 2 0.00056 0.025 7.5 0.0 12 85 266 351 264 413 0.74 # 31 # 1602 # -1 # ID=9_1;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.564 3_2 - 87 Rad60-SLD PF11976.3 72 5.6e-05 15.6 0.2 1 1 9.1e-07 8.1e-05 15.1 0.2 12 39 41 68 33 77 0.83 # 803 # 1063 # -1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.410 12_1 - 254 AAA_3 PF07726.6 131 0.00047 12.5 0.0 1 1 9.1e-06 0.00081 11.8 0.0 2 74 100 170 99 196 0.72 # 2 # 763 # -1 # ID=12_1;partial=10;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.555 2_11 - 262 N6_N4_Mtase PF01555.13 231 1.2e-11 37.2 0.0 1 1 1.5e-13 1.3e-11 37.1 0.0 1 106 21 116 21 200 0.86 # 6324 # 7109 # -1 # ID=2_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.537 12_1 - 254 AAA_17 PF13207.1 121 1.5e-05 18.6 0.1 1 1 2.2e-06 0.0001 15.9 0.1 2 28 100 129 99 197 0.64 # 2 # 763 # -1 # ID=12_1;partial=10;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.555 3_6 - 682 AAA_17 PF13207.1 121 0.00041 13.9 0.1 1 1 6.2e-05 0.0028 11.3 0.0 5 62 85 136 83 157 0.60 # 2662 # 4707 # -1 # ID=3_6;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.558 3_6 - 682 MobB PF03205.9 140 0.00021 13.8 0.1 1 1 6e-06 0.00053 12.5 0.1 7 33 86 112 82 117 0.87 # 2662 # 4707 # -1 # ID=3_6;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.558 5_5 - 389 ArsA_ATPase PF02374.10 305 1.6e-06 20.1 0.4 1 2 3.3e-06 0.00015 13.6 0.1 9 36 115 142 109 151 0.89 # 3239 # 4405 # -1 # ID=5_5;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.472 5_5 - 389 ArsA_ATPase PF02374.10 305 1.6e-06 20.1 0.4 2 2 0.0022 0.099 4.3 0.0 123 136 231 244 221 251 0.84 # 3239 # 4405 # -1 # ID=5_5;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.472 12_1 - 254 ArsA_ATPase PF02374.10 305 4.7e-05 15.2 0.0 1 1 1.6e-06 7.1e-05 14.6 0.0 6 38 102 134 98 176 0.91 # 2 # 763 # -1 # ID=12_1;partial=10;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.555 12_1 - 254 PhoH PF02562.11 205 1.5e-06 20.3 0.0 1 1 3.7e-08 3.3e-06 19.2 0.0 15 47 93 125 80 185 0.90 # 2 # 763 # -1 # ID=12_1;partial=10;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.555 12_1 - 254 AFG1_ATPase PF03969.11 362 1.6e-06 19.9 0.0 1 1 2.4e-08 2.2e-06 19.4 0.0 64 214 99 245 68 252 0.77 # 2 # 763 # -1 # ID=12_1;partial=10;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.555 5_5 - 389 VirC1 PF07015.6 231 5.9e-05 14.9 0.1 1 2 0.00028 0.025 6.3 0.0 4 42 109 147 107 154 0.91 # 3239 # 4405 # -1 # ID=5_5;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.472 5_5 - 389 VirC1 PF07015.6 231 5.9e-05 14.9 0.1 2 2 0.0003 0.027 6.2 0.1 84 139 235 290 222 312 0.77 # 3239 # 4405 # -1 # ID=5_5;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.472 12_1 - 254 Arch_ATPase PF01637.13 234 0.00013 14.4 0.0 1 1 1.7e-05 0.00074 12.0 0.0 18 119 95 190 81 196 0.62 # 2 # 763 # -1 # ID=12_1;partial=10;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.555 3_6 - 682 Arch_ATPase PF01637.13 234 0.00034 13.1 0.0 1 1 1.8e-05 0.0008 11.8 0.0 27 78 86 131 78 169 0.79 # 2662 # 4707 # -1 # ID=3_6;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.558 12_1 - 254 AAA_16 PF13191.1 185 6.4e-06 19.0 0.3 1 1 1.2e-06 5.2e-05 16.0 0.1 23 59 96 132 85 155 0.81 # 2 # 763 # -1 # ID=12_1;partial=10;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.555 3_6 - 682 AAA_16 PF13191.1 185 0.00012 14.9 0.0 1 1 9e-06 0.0004 13.1 0.0 22 56 77 112 73 211 0.82 # 2662 # 4707 # -1 # ID=3_6;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.558 12_1 - 254 AAA_18 PF13238.1 129 0.00019 14.5 0.2 1 1 4.6e-06 0.00041 13.4 0.2 1 19 100 122 100 196 0.75 # 2 # 763 # -1 # ID=12_1;partial=10;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.555 11_1 - 513 AAA_13 PF13166.1 712 0.00047 11.4 0.1 1 1 5.2e-06 0.00047 11.4 0.1 362 438 6 82 1 102 0.91 # 38 # 1576 # -1 # ID=11_1;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.587 5_5 - 389 CbiA PF01656.18 195 8.9e-37 119.1 0.0 1 1 2.7e-38 1.2e-36 118.7 0.0 2 194 110 339 109 340 0.80 # 3239 # 4405 # -1 # ID=5_5;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.472 12_1 - 254 CbiA PF01656.18 195 9.1e-06 17.9 0.0 1 1 2.7e-07 1.2e-05 17.5 0.0 9 63 107 171 100 249 0.64 # 2 # 763 # -1 # ID=12_1;partial=10;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.555 12_1 - 254 KaiC PF06745.8 227 0.00076 11.3 0.0 1 2 3.3e-05 0.003 9.4 0.0 18 63 96 140 78 167 0.80 # 2 # 763 # -1 # ID=12_1;partial=10;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.555 12_1 - 254 KaiC PF06745.8 227 0.00076 11.3 0.0 2 2 0.019 1.7 0.4 0.0 105 146 147 183 134 201 0.65 # 2 # 763 # -1 # ID=12_1;partial=10;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.555 12_1 - 254 AAA_14 PF13173.1 128 4.5e-08 25.8 0.0 1 1 1.9e-09 1.7e-07 23.9 0.0 3 96 98 197 96 206 0.68 # 2 # 763 # -1 # ID=12_1;partial=10;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.555 12_1 - 254 AAA PF00004.24 132 2.5e-09 30.2 0.0 1 1 7.8e-11 6.9e-09 28.8 0.0 1 74 100 174 100 199 0.77 # 2 # 763 # -1 # ID=12_1;partial=10;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.555 12_1 - 254 Bac_DnaA PF00308.13 219 2e-12 39.9 0.0 1 1 3.5e-14 3.1e-12 39.3 0.0 36 139 99 199 71 208 0.88 # 2 # 763 # -1 # ID=12_1;partial=10;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.555 12_1 - 254 Sigma54_activat PF00158.21 168 0.00018 13.7 0.1 1 1 8e-05 0.0071 8.5 0.1 19 50 94 125 82 191 0.78 # 2 # 763 # -1 # ID=12_1;partial=10;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.555 2_6 - 188 N6_Mtase PF02384.11 311 0.00014 13.7 0.0 1 2 1.7e-05 0.0015 10.3 0.0 28 64 32 68 21 83 0.88 # 2892 # 3455 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.590 2_6 - 188 N6_Mtase PF02384.11 311 0.00014 13.7 0.0 2 2 0.019 1.6 0.3 0.0 127 137 114 124 103 133 0.82 # 2892 # 3455 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.590 3_6 - 682 TraG-D_C PF12696.2 128 6.3e-22 70.6 0.0 1 1 1.6e-23 1.4e-21 69.5 0.0 1 126 314 435 314 437 0.83 # 2662 # 4707 # -1 # ID=3_6;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.558 5_5 - 389 AAA_31 PF13614.1 157 8.8e-10 31.5 0.0 1 2 2.7e-08 1.2e-06 21.3 0.0 2 49 108 155 107 195 0.91 # 3239 # 4405 # -1 # ID=5_5;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.472 5_5 - 389 AAA_31 PF13614.1 157 8.8e-10 31.5 0.0 2 2 0.00036 0.016 7.9 0.1 110 152 227 268 223 272 0.84 # 3239 # 4405 # -1 # ID=5_5;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.472 12_1 - 254 AAA_31 PF13614.1 157 0.00011 14.9 0.1 1 1 7.6e-06 0.00034 13.3 0.1 10 39 106 135 102 195 0.88 # 2 # 763 # -1 # ID=12_1;partial=10;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.555 12_1 - 254 NTPase_1 PF03266.10 168 0.00039 12.9 0.0 1 2 0.00039 0.034 6.6 0.0 2 19 100 117 99 129 0.77 # 2 # 763 # -1 # ID=12_1;partial=10;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.555 12_1 - 254 NTPase_1 PF03266.10 168 0.00039 12.9 0.0 2 2 0.0021 0.18 4.2 0.0 85 107 149 170 134 197 0.74 # 2 # 763 # -1 # ID=12_1;partial=10;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.555 12_1 - 254 AAA_33 PF13671.1 143 8.9e-05 15.1 0.0 1 1 2.1e-06 0.00018 14.1 0.0 2 44 100 147 100 192 0.75 # 2 # 763 # -1 # ID=12_1;partial=10;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.555 12_1 - 254 KTI12 PF08433.5 270 0.00022 13.2 0.0 1 1 4e-06 0.00035 12.5 0.0 4 69 100 157 99 198 0.75 # 2 # 763 # -1 # ID=12_1;partial=10;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.555 2_6 - 188 Methyltransf_26 PF13659.1 117 2.8e-13 42.7 0.0 1 1 1.2e-14 5.2e-13 41.8 0.0 2 114 52 147 51 150 0.91 # 2892 # 3455 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.590 2_11 - 262 Methyltransf_26 PF13659.1 117 6.3e-06 19.0 0.0 1 1 3.9e-07 1.8e-05 17.6 0.0 57 114 7 71 2 74 0.72 # 6324 # 7109 # -1 # ID=2_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.537 12_1 - 254 AAA_30 PF13604.1 196 0.00025 13.4 0.1 1 1 1.5e-05 0.0013 11.0 0.1 17 60 96 139 86 196 0.79 # 2 # 763 # -1 # ID=12_1;partial=10;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.555 2_6 - 188 MTS PF05175.9 170 2.4e-09 29.5 0.0 1 1 3.7e-11 3.3e-09 29.1 0.0 31 140 50 148 41 165 0.85 # 2892 # 3455 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.590 12_1 - 254 AAA_35 PF14516.1 331 0.00021 12.7 0.1 1 3 0.0077 0.68 1.1 0.1 239 272 12 42 5 56 0.79 # 2 # 763 # -1 # ID=12_1;partial=10;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.555 12_1 - 254 AAA_35 PF14516.1 331 0.00021 12.7 0.1 2 3 0.0015 0.13 3.5 0.0 26 76 92 142 79 150 0.77 # 2 # 763 # -1 # ID=12_1;partial=10;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.555 12_1 - 254 AAA_35 PF14516.1 331 0.00021 12.7 0.1 3 3 0.00095 0.085 4.1 0.0 122 161 153 192 142 199 0.88 # 2 # 763 # -1 # ID=12_1;partial=10;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.555 2_6 - 188 Methyltrans_SAM PF10672.4 286 0.00079 11.0 0.0 1 1 1.3e-05 0.0011 10.5 0.0 196 261 113 173 100 180 0.77 # 2892 # 3455 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.590 12_1 - 254 RuvB_N PF05496.7 234 1.5e-05 16.8 0.2 1 1 3.9e-07 3.4e-05 15.7 0.2 49 119 96 176 88 186 0.65 # 2 # 763 # -1 # ID=12_1;partial=10;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.555 12_1 - 254 AAA_19 PF13245.1 76 1.2e-07 24.1 0.1 1 1 4.3e-09 3.8e-07 22.6 0.1 13 49 100 132 87 145 0.85 # 2 # 763 # -1 # ID=12_1;partial=10;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.555 3_6 - 682 AAA_10 PF12846.2 304 1.7e-14 46.6 0.1 1 1 1.5e-14 6.5e-13 41.4 0.1 3 300 81 393 80 395 0.79 # 2662 # 4707 # -1 # ID=3_6;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.558 12_1 - 254 AAA_10 PF12846.2 304 0.00018 13.7 0.0 1 1 6.9e-06 0.00031 12.9 0.0 2 36 98 132 97 201 0.85 # 2 # 763 # -1 # ID=12_1;partial=10;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.555 2_6 - 188 Methyltransf_31 PF13847.1 152 2.8e-06 19.7 0.0 1 1 3.9e-08 3.5e-06 19.4 0.0 5 119 52 162 48 183 0.83 # 2892 # 3455 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.590 11_1 - 513 DUF3584 PF12128.3 1201 0.0048 6.9 5.4 1 2 7.5e-06 0.00066 9.8 1.7 304 377 12 86 5 100 0.87 # 38 # 1576 # -1 # ID=11_1;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.587 11_1 - 513 DUF3584 PF12128.3 1201 0.0048 6.9 5.4 2 2 0.083 7.4 -3.7 0.1 278 304 375 401 353 418 0.49 # 38 # 1576 # -1 # ID=11_1;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.587 12_1 - 254 DEAD PF00270.24 169 0.0008 11.7 0.0 1 1 2.3e-05 0.002 10.3 0.0 13 102 96 197 86 219 0.67 # 2 # 763 # -1 # ID=12_1;partial=10;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.555 3_6 - 682 TrwB_AAD_bind PF10412.4 386 9.3e-150 491.2 0.0 1 1 1.3e-151 1.2e-149 490.8 0.0 2 386 66 456 65 456 0.99 # 2662 # 4707 # -1 # ID=3_6;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.558 12_1 - 254 Sigma54_activ_2 PF14532.1 138 0.00046 13.0 0.0 1 1 1.4e-05 0.0012 11.6 0.0 17 110 93 200 82 229 0.65 # 2 # 763 # -1 # ID=12_1;partial=10;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.555 3_6 - 682 T4SS-DNA_transf PF02534.9 469 1.4e-12 39.6 0.0 1 1 4e-13 3.5e-11 35.0 0.0 142 394 167 403 143 423 0.71 # 2662 # 4707 # -1 # ID=3_6;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.558 2_6 - 188 TIGR00755 TIGR00755 256 1.1e-08 27.1 0.0 1 1 1.6e-10 1.5e-08 26.7 0.0 8 105 29 123 25 134 0.90 # 2892 # 3455 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.590 12_1 - 254 ArgK PF03308.11 267 9e-05 14.0 0.0 1 1 1.9e-06 0.00017 13.1 0.0 27 66 95 134 81 136 0.85 # 2 # 763 # -1 # ID=12_1;partial=10;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.555 2_6 - 188 Methyltransf_23 PF13489.1 161 0.00012 14.6 0.0 1 1 1.6e-06 0.00014 14.4 0.0 9 124 38 157 6 174 0.79 # 2892 # 3455 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.590 3_6 - 682 GTP_EFTU PF00009.22 188 2.8e-05 16.3 0.0 1 2 3.7e-05 0.0033 9.6 0.0 2 28 78 104 77 126 0.90 # 2662 # 4707 # -1 # ID=3_6;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.558 3_6 - 682 GTP_EFTU PF00009.22 188 2.8e-05 16.3 0.0 2 2 0.0017 0.15 4.1 0.0 51 85 229 261 209 270 0.89 # 2662 # 4707 # -1 # ID=3_6;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.558 12_1 - 254 AAA_24 PF13479.1 213 0.00057 12.2 0.0 1 1 1.1e-05 0.001 11.4 0.0 5 23 99 117 95 159 0.86 # 2 # 763 # -1 # ID=12_1;partial=10;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.555 12_1 - 254 NACHT PF05729.7 166 5.8e-05 15.5 0.3 1 2 1.3e-05 0.0012 11.3 0.1 3 26 100 123 98 133 0.84 # 2 # 763 # -1 # ID=12_1;partial=10;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.555 12_1 - 254 NACHT PF05729.7 166 5.8e-05 15.5 0.3 2 2 0.0087 0.78 2.1 0.0 57 128 136 198 126 215 0.72 # 2 # 763 # -1 # ID=12_1;partial=10;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.555 12_1 - 254 AAA_25 PF13481.1 194 1.1e-07 24.1 0.1 1 1 2.5e-09 2.2e-07 23.2 0.1 23 66 82 132 61 196 0.69 # 2 # 763 # -1 # ID=12_1;partial=10;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.555 12_1 - 254 AAA_28 PF13521.1 163 3.3e-05 16.6 1.1 1 2 7e-06 0.00063 12.5 0.1 2 43 100 146 99 158 0.68 # 2 # 763 # -1 # ID=12_1;partial=10;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.555 12_1 - 254 AAA_28 PF13521.1 163 3.3e-05 16.6 1.1 2 2 0.0034 0.3 3.8 0.0 95 150 144 193 131 203 0.76 # 2 # 763 # -1 # ID=12_1;partial=10;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.555 12_1 - 254 AAA_5 PF07728.9 139 5.3e-05 15.7 1.7 1 1 1.8e-06 0.00016 14.2 0.6 1 19 99 117 99 190 0.86 # 2 # 763 # -1 # ID=12_1;partial=10;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.555 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/ba4812c4-5f8b-4cc2-b61e-cb3fe4554528 # Target file: checkm_output/bins/pm803/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm803/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/ba4812c4-5f8b-4cc2-b61e-cb3fe4554528 checkm_output/bins/pm803/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 17:09:53 2020 # [ok]