# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_8 - 146 AAA_23 PF13476.1 202 0.00013 11.8 5.4 1 1 1.6e-05 0.00014 11.7 5.4 128 197 45 133 8 136 0.61 # 6154 # 6591 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.541 1_7 - 522 DUF3584 PF12128.3 1201 0.021 1.5 58.7 1 2 0.0071 0.064 -0.1 43.1 342 533 60 252 54 265 0.82 # 4329 # 5894 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.426 1_7 - 522 DUF3584 PF12128.3 1201 0.021 1.5 58.7 2 2 6e-05 0.00054 6.8 7.1 621 746 274 394 269 414 0.72 # 4329 # 5894 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.426 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/4637252b-13fb-4679-b453-c7770100237b # Target file: checkm_output/bins/pm799/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm799/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/4637252b-13fb-4679-b453-c7770100237b checkm_output/bins/pm799/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 17:09:48 2020 # [ok]