# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_43 - 228 UPF0020 PF01170.13 180 1e-05 17.9 0.0 1 2 0.00025 0.022 7.0 0.0 103 123 17 37 4 89 0.71 # 39841 # 40524 # 1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.563 1_43 - 228 UPF0020 PF01170.13 180 1e-05 17.9 0.0 2 2 6.3e-05 0.0055 9.0 0.0 28 54 163 189 158 220 0.67 # 39841 # 40524 # 1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.563 1_36 - 211 MipZ PF09140.6 261 5.4e-09 28.2 0.2 1 3 7.2e-07 6.3e-05 14.8 0.1 5 51 7 53 3 59 0.89 # 32960 # 33592 # 1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.469 1_36 - 211 MipZ PF09140.6 261 5.4e-09 28.2 0.2 2 3 1.2e-05 0.0011 10.8 0.0 88 135 69 116 58 151 0.82 # 32960 # 33592 # 1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.469 1_36 - 211 MipZ PF09140.6 261 5.4e-09 28.2 0.2 3 3 0.066 5.8 -1.4 0.0 206 237 161 193 137 202 0.76 # 32960 # 33592 # 1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.469 1_51 - 176 SSB PF00436.20 104 2.9e-41 132.3 0.3 1 1 4.2e-43 3.7e-41 132.0 0.3 1 101 6 109 6 112 0.96 # 44216 # 44743 # 1 # ID=1_51;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.585 1_4 - 1757 UvrD_C_2 PF13538.1 104 6.8e-07 22.2 0.4 1 2 0.018 1.6 1.7 0.0 6 44 1227 1265 1223 1294 0.75 # 3074 # 8344 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.600 1_4 - 1757 UvrD_C_2 PF13538.1 104 6.8e-07 22.2 0.4 2 2 2.5e-07 2.2e-05 17.3 0.1 4 102 1342 1444 1339 1446 0.73 # 3074 # 8344 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.600 1_72 - 877 DUF87 PF01935.12 229 2.1e-07 23.7 0.0 1 1 7.9e-09 6.9e-07 22.0 0.0 26 222 483 670 469 677 0.75 # 59429 # 62059 # 1 # ID=1_72;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.536 1_43 - 228 Methyltransf_11 PF08241.7 95 0.00054 13.2 0.0 1 2 0.0024 0.22 4.9 0.0 78 93 53 68 48 70 0.84 # 39841 # 40524 # 1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.563 1_43 - 228 Methyltransf_11 PF08241.7 95 0.00054 13.2 0.0 2 2 0.0014 0.12 5.7 0.0 5 54 172 220 168 226 0.82 # 39841 # 40524 # 1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.563 1_43 - 228 N6_N4_Mtase PF01555.13 231 7.1e-37 119.8 0.0 1 1 3.6e-36 3.1e-34 111.1 0.0 1 228 21 200 21 203 0.89 # 39841 # 40524 # 1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.563 1_1 - 748 AAA_17 PF13207.1 121 0.00028 14.4 0.0 1 1 7.1e-06 0.00063 13.3 0.0 3 28 189 218 187 355 0.73 # 115 # 2358 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.532 1_72 - 877 MobB PF03205.9 140 0.00023 13.6 0.2 1 2 2.7e-05 0.0024 10.3 0.0 4 37 484 516 482 524 0.79 # 59429 # 62059 # 1 # ID=1_72;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.536 1_72 - 877 MobB PF03205.9 140 0.00023 13.6 0.2 2 2 0.034 3 0.3 0.0 25 64 696 733 691 745 0.86 # 59429 # 62059 # 1 # ID=1_72;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.536 1_36 - 211 ArsA_ATPase PF02374.10 305 0.00025 12.8 1.2 1 2 7.6e-06 0.00067 11.4 0.8 5 32 7 34 1 48 0.85 # 32960 # 33592 # 1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.469 1_36 - 211 ArsA_ATPase PF02374.10 305 0.00025 12.8 1.2 2 2 0.04 3.5 -0.8 0.0 108 134 57 87 35 89 0.66 # 32960 # 33592 # 1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.469 1_69 - 75 T2SE PF00437.15 272 0.00023 12.8 0.0 1 1 2.6e-06 0.00023 12.8 0.0 106 153 21 65 1 70 0.76 # 58172 # 58396 # 1 # ID=1_69;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.413 1_1 - 748 Zeta_toxin PF06414.7 201 0.00019 13.3 0.0 1 2 0.0001 0.0029 9.4 0.0 21 49 190 219 182 248 0.86 # 115 # 2358 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.532 1_1 - 748 Zeta_toxin PF06414.7 201 0.00019 13.3 0.0 2 2 0.084 2.5 -0.1 0.0 54 92 283 322 279 342 0.85 # 115 # 2358 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.532 1_69 - 75 Zeta_toxin PF06414.7 201 0.00021 13.1 0.1 1 1 8.5e-06 0.00025 12.9 0.1 14 39 38 63 26 69 0.82 # 58172 # 58396 # 1 # ID=1_69;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.413 1_22 - 376 Zeta_toxin PF06414.7 201 0.00026 12.8 0.0 1 1 2e-05 0.0006 11.7 0.0 98 135 317 354 303 356 0.93 # 21358 # 22485 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.496 1_1 - 748 AAA_16 PF13191.1 185 4.2e-06 19.6 0.0 1 1 2e-07 1.8e-05 17.5 0.0 21 60 182 222 177 262 0.81 # 115 # 2358 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.532 1_36 - 211 CbiA PF01656.18 195 5.6e-16 51.2 0.1 1 1 1.5e-17 1.3e-15 50.0 0.1 3 178 7 164 5 180 0.75 # 32960 # 33592 # 1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.469 1_36 - 211 AAA PF00004.24 132 0.00073 12.5 0.0 1 1 1.4e-05 0.0013 11.7 0.0 8 38 13 55 9 104 0.73 # 32960 # 33592 # 1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.469 1_1 - 748 TraG-D_C PF12696.2 128 7e-21 67.2 0.0 1 1 1.4e-22 1.3e-20 66.4 0.0 1 127 419 541 419 542 0.86 # 115 # 2358 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.532 1_36 - 211 AAA_31 PF13614.1 157 8e-07 21.8 0.0 1 2 8.4e-07 7.4e-05 15.5 0.0 2 44 4 46 4 61 0.86 # 32960 # 33592 # 1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.469 1_36 - 211 AAA_31 PF13614.1 157 8e-07 21.8 0.0 2 2 0.0023 0.2 4.3 0.0 112 151 72 112 57 117 0.82 # 32960 # 33592 # 1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.469 1_43 - 228 Methyltransf_26 PF13659.1 117 6e-12 38.4 0.1 1 2 1.5e-07 1.3e-05 17.9 0.0 57 114 7 71 2 74 0.72 # 39841 # 40524 # 1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.563 1_43 - 228 Methyltransf_26 PF13659.1 117 6e-12 38.4 0.1 2 2 1e-07 9e-06 18.5 0.0 4 44 167 206 164 222 0.82 # 39841 # 40524 # 1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.563 1_4 - 1757 AAA_30 PF13604.1 196 5.8e-44 142.7 13.8 1 2 1.9e-05 0.00083 11.7 3.8 7 147 420 552 416 562 0.84 # 3074 # 8344 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.600 1_4 - 1757 AAA_30 PF13604.1 196 5.8e-44 142.7 13.8 2 2 2.4e-43 1.1e-41 135.3 1.3 1 186 968 1156 968 1160 0.93 # 3074 # 8344 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.600 1_1 - 748 AAA_30 PF13604.1 196 0.00054 12.3 0.0 1 1 2.6e-05 0.0012 11.2 0.0 21 57 188 224 180 230 0.85 # 115 # 2358 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.532 1_72 - 877 FtsK_SpoIIIE PF01580.13 205 9.1e-06 18.0 0.1 1 2 4.1e-06 0.00018 13.7 0.0 39 63 477 505 464 508 0.84 # 59429 # 62059 # 1 # ID=1_72;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.536 1_72 - 877 FtsK_SpoIIIE PF01580.13 205 9.1e-06 18.0 0.1 2 2 0.022 0.95 1.6 0.0 75 166 531 626 530 637 0.80 # 59429 # 62059 # 1 # ID=1_72;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.536 1_69 - 75 FtsK_SpoIIIE PF01580.13 205 0.00026 13.2 0.1 1 1 6.1e-06 0.00027 13.2 0.1 7 64 10 66 4 72 0.76 # 58172 # 58396 # 1 # ID=1_69;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.413 1_43 - 228 Cons_hypoth95 PF03602.10 183 1.1e-05 17.6 0.0 1 2 0.00038 0.033 6.3 0.0 112 146 18 54 9 82 0.65 # 39841 # 40524 # 1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.563 1_43 - 228 Cons_hypoth95 PF03602.10 183 1.1e-05 17.6 0.0 2 2 3.9e-05 0.0034 9.5 0.0 41 62 162 183 145 219 0.78 # 39841 # 40524 # 1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.563 1_4 - 1757 AAA_19 PF13245.1 76 1e-07 24.4 1.4 1 1 4.5e-09 3.9e-07 22.5 0.3 7 76 981 1047 974 1047 0.74 # 3074 # 8344 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.600 1_72 - 877 AAA_10 PF12846.2 304 2.2e-49 161.2 0.0 1 1 9e-51 4e-49 160.3 0.0 1 294 480 769 480 775 0.89 # 59429 # 62059 # 1 # ID=1_72;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.536 1_1 - 748 AAA_10 PF12846.2 304 1.3e-10 33.9 0.0 1 1 4.7e-11 2.1e-09 29.9 0.0 3 296 187 494 186 500 0.70 # 115 # 2358 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.532 1_1 - 748 TrwB_AAD_bind PF10412.4 386 2.8e-150 492.9 0.0 1 1 7.7e-152 3.4e-150 492.6 0.0 2 386 172 561 171 561 0.99 # 115 # 2358 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.532 1_72 - 877 TrwB_AAD_bind PF10412.4 386 3.6e-07 21.8 0.1 1 2 4.8e-08 2.1e-06 19.2 0.0 15 53 480 518 471 548 0.80 # 59429 # 62059 # 1 # ID=1_72;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.536 1_72 - 877 TrwB_AAD_bind PF10412.4 386 3.6e-07 21.8 0.1 2 2 0.041 1.8 -0.3 0.0 261 317 714 770 686 773 0.92 # 59429 # 62059 # 1 # ID=1_72;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.536 1_4 - 1757 AAA_11 PF13086.1 236 0.00016 14.0 3.3 1 1 2.7e-06 0.00024 13.4 0.0 2 75 969 1039 968 1060 0.80 # 3074 # 8344 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.600 1_1 - 748 T4SS-DNA_transf PF02534.9 469 5.7e-10 31.0 0.0 1 1 4e-11 1.7e-09 29.4 0.0 264 361 382 476 198 500 0.82 # 115 # 2358 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.532 1_72 - 877 T4SS-DNA_transf PF02534.9 469 5.1e-05 14.7 0.0 1 2 0.00085 0.037 5.2 0.0 105 185 534 608 471 624 0.86 # 59429 # 62059 # 1 # ID=1_72;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.536 1_72 - 877 T4SS-DNA_transf PF02534.9 469 5.1e-05 14.7 0.0 2 2 0.00022 0.0096 7.1 0.0 319 378 712 770 664 772 0.90 # 59429 # 62059 # 1 # ID=1_72;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.536 1_43 - 228 MethyltransfD12 PF02086.10 260 0.00039 12.6 0.0 1 2 0.016 1.4 1.0 0.0 175 188 18 31 8 88 0.83 # 39841 # 40524 # 1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.563 1_43 - 228 MethyltransfD12 PF02086.10 260 0.00039 12.6 0.0 2 2 4e-05 0.0035 9.5 0.0 20 46 163 189 148 197 0.78 # 39841 # 40524 # 1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.563 1_72 - 877 Pox_A32 PF04665.7 241 0.00076 11.5 0.0 1 1 2.3e-05 0.002 10.1 0.0 7 38 474 505 470 520 0.85 # 59429 # 62059 # 1 # ID=1_72;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.536 1_43 - 228 Methyltransf_15 PF09445.5 164 0.00068 11.9 0.0 1 2 0.042 3.7 -0.2 0.0 53 79 4 29 2 33 0.90 # 39841 # 40524 # 1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.563 1_43 - 228 Methyltransf_15 PF09445.5 164 0.00068 11.9 0.0 2 2 4.3e-05 0.0038 9.5 0.0 3 31 166 194 164 208 0.86 # 39841 # 40524 # 1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.563 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/931e4cc2-26f2-4be9-a3b5-90fdd18234f4 # Target file: checkm_output/bins/pm794/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm794/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/931e4cc2-26f2-4be9-a3b5-90fdd18234f4 checkm_output/bins/pm794/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 17:09:48 2020 # [ok]