# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_24 - 354 UPF0020 PF01170.13 180 3.1e-05 15.6 0.2 1 2 3.3e-05 0.0018 9.9 0.0 89 116 12 38 1 52 0.68 # 17016 # 18077 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.526 1_24 - 354 UPF0020 PF01170.13 180 3.1e-05 15.6 0.2 2 2 0.003 0.16 3.5 0.0 26 49 306 328 299 347 0.81 # 17016 # 18077 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.526 1_55 - 388 MipZ PF09140.6 261 0.00028 12.0 0.1 1 2 8.1e-05 0.0045 8.1 0.0 4 47 110 153 107 165 0.87 # 53537 # 54700 # -1 # ID=1_55;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.491 1_55 - 388 MipZ PF09140.6 261 0.00028 12.0 0.1 2 2 0.0065 0.36 1.8 0.0 87 126 223 262 198 349 0.72 # 53537 # 54700 # -1 # ID=1_55;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.491 1_24 - 354 Methyltransf_11 PF08241.7 95 0.00014 14.4 0.0 1 1 3.6e-05 0.002 10.7 0.0 69 95 53 79 1 79 0.67 # 17016 # 18077 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.526 1_24 - 354 N6_N4_Mtase PF01555.13 231 7.9e-44 141.9 0.0 1 1 5.1e-45 2.8e-43 140.1 0.0 2 229 30 346 29 348 0.87 # 17016 # 18077 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.526 1_55 - 388 ArsA_ATPase PF02374.10 305 5e-07 21.0 0.1 1 2 5.6e-07 3.1e-05 15.1 0.0 5 36 111 142 108 151 0.88 # 53537 # 54700 # -1 # ID=1_55;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.491 1_55 - 388 ArsA_ATPase PF02374.10 305 5e-07 21.0 0.1 2 2 0.0024 0.13 3.3 0.0 125 136 233 244 223 254 0.84 # 53537 # 54700 # -1 # ID=1_55;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.491 1_35 - 570 Terminase_1 PF03354.10 477 1e-111 365.7 0.0 1 1 2.1e-113 1.2e-111 365.5 0.0 1 476 82 554 82 555 0.92 # 23520 # 25229 # 1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.503 1_55 - 388 VirC1 PF07015.6 231 1.3e-06 19.7 0.3 1 2 1.2e-05 0.00067 10.8 0.0 4 42 109 147 107 153 0.91 # 53537 # 54700 # -1 # ID=1_55;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.491 1_55 - 388 VirC1 PF07015.6 231 1.3e-06 19.7 0.3 2 2 0.00029 0.016 6.3 0.3 83 198 234 348 222 380 0.73 # 53537 # 54700 # -1 # ID=1_55;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.491 1_55 - 388 CbiA PF01656.18 195 1.2e-30 98.4 0.0 1 1 2.8e-32 1.5e-30 98.1 0.0 1 174 109 320 109 340 0.79 # 53537 # 54700 # -1 # ID=1_55;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.491 1_9 - 1335 PCMT PF01135.14 210 7.8e-06 17.6 0.0 1 1 3.2e-07 1.7e-05 16.4 0.0 14 162 468 619 462 624 0.80 # 6806 # 10810 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.556 1_55 - 388 AAA_31 PF13614.1 157 1.1e-08 27.3 0.0 1 2 1.5e-08 8.5e-07 21.1 0.0 2 50 108 156 107 196 0.91 # 53537 # 54700 # -1 # ID=1_55;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.491 1_55 - 388 AAA_31 PF13614.1 157 1.1e-08 27.3 0.0 2 2 0.0027 0.15 4.1 0.0 116 151 230 267 207 272 0.81 # 53537 # 54700 # -1 # ID=1_55;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.491 1_24 - 354 Methyltransf_26 PF13659.1 117 1.4e-16 52.7 0.1 1 2 3e-13 1.7e-11 36.3 0.0 51 116 9 82 3 83 0.84 # 17016 # 18077 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.526 1_24 - 354 Methyltransf_26 PF13659.1 117 1.4e-16 52.7 0.1 2 2 2.5e-06 0.00014 14.0 0.0 1 35 309 342 309 351 0.91 # 17016 # 18077 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.526 1_24 - 354 MTS PF05175.9 170 0.00015 13.2 0.0 1 1 6.1e-06 0.00033 12.1 0.0 73 154 3 97 1 107 0.73 # 17016 # 18077 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.526 1_9 - 1335 Herpes_ori_bp PF02399.10 824 2e-08 24.6 0.0 1 2 7.9e-08 4.4e-06 16.9 0.0 46 198 525 677 493 688 0.75 # 6806 # 10810 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.556 1_9 - 1335 Herpes_ori_bp PF02399.10 824 2e-08 24.6 0.0 2 2 0.00024 0.013 5.4 0.0 272 351 724 814 704 818 0.81 # 6806 # 10810 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.556 1_51 - 204 Lambda_tail_I PF06805.7 82 5.7e-18 56.7 0.0 1 1 1.5e-19 8.2e-18 56.2 0.0 4 82 10 92 7 92 0.97 # 37438 # 38049 # 1 # ID=1_51;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.474 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/5d9553d4-0921-4105-a5a6-e55ddd0ddf93 # Target file: checkm_output/bins/pm79/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm79/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/5d9553d4-0921-4105-a5a6-e55ddd0ddf93 checkm_output/bins/pm79/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 17:09:44 2020 # [ok]