# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_46 - 223 3HCDH_N PF02737.13 180 0.00018 13.4 0.2 1 1 6.6e-06 0.00042 12.3 0.2 3 45 12 56 10 84 0.80 # 44297 # 44965 # 1 # ID=1_46;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.513 1_46 - 223 F420_oxidored PF03807.12 96 5.6e-05 15.8 0.2 1 1 2.4e-06 0.00015 14.4 0.2 1 47 10 54 10 93 0.73 # 44297 # 44965 # 1 # ID=1_46;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.513 1_43 - 551 Malic_M PF03949.10 255 5.7e-89 290.2 0.0 1 1 1.2e-90 7.2e-89 289.9 0.0 1 255 263 516 263 516 0.98 # 41055 # 42707 # -1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.488 1_46 - 223 adh_short PF00106.20 167 9.7e-37 118.7 0.2 1 1 1.9e-38 1.2e-36 118.4 0.2 1 166 10 183 10 184 0.94 # 44297 # 44965 # 1 # ID=1_46;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.513 1_48 - 410 AAA_13 PF13166.1 712 1.6e-13 42.2 0.0 1 1 4.2e-15 2.7e-13 41.4 0.0 498 572 115 186 110 212 0.87 # 45958 # 47187 # 1 # ID=1_48;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.499 1_46 - 223 KR PF08659.5 181 2.7e-16 52.0 0.1 1 1 6.9e-18 4.3e-16 51.3 0.1 3 156 12 172 11 194 0.88 # 44297 # 44965 # 1 # ID=1_46;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.513 1_46 - 223 UPF0146 PF03686.8 127 3.4e-05 15.9 0.7 1 2 8e-06 0.0005 12.2 0.0 20 56 17 53 7 56 0.84 # 44297 # 44965 # 1 # ID=1_46;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.513 1_46 - 223 UPF0146 PF03686.8 127 3.4e-05 15.9 0.7 2 2 0.025 1.6 0.9 0.1 17 61 62 106 51 117 0.81 # 44297 # 44965 # 1 # ID=1_46;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.513 1_46 - 223 NAD_binding_10 PF13460.1 183 7.7e-05 15.0 0.1 1 1 1.8e-06 0.00011 14.5 0.1 2 38 13 55 12 139 0.77 # 44297 # 44965 # 1 # ID=1_46;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.513 1_46 - 223 adh_short_C2 PF13561.1 241 7.1e-19 60.7 0.0 1 1 1.4e-20 9.1e-19 60.4 0.0 3 190 18 207 16 216 0.87 # 44297 # 44965 # 1 # ID=1_46;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.513 1_46 - 223 Epimerase PF01370.16 236 6.5e-05 14.7 0.2 1 1 5.6e-06 0.00035 12.3 0.2 2 98 13 123 12 221 0.65 # 44297 # 44965 # 1 # ID=1_46;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.513 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/8663c55d-be5e-4cb5-be4e-c171960f88c0 # Target file: checkm_output/bins/pm785/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm785/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/8663c55d-be5e-4cb5-be4e-c171960f88c0 checkm_output/bins/pm785/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 17:09:40 2020 # [ok]