# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_6 - 149 Methyltransf_12 PF08242.7 99 0.00063 12.8 0.0 1 1 1.1e-05 0.00089 12.3 0.0 1 97 55 142 55 144 0.83 # 4099 # 4545 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.584 1_6 - 149 UPF0020 PF01170.13 180 0.00082 11.5 0.0 1 1 3.5e-05 0.0027 9.8 0.0 20 43 42 65 35 130 0.79 # 4099 # 4545 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.584 1_6 - 149 RrnaAD PF00398.15 262 3.6e-09 28.5 0.0 1 1 5.5e-11 4.2e-09 28.3 0.0 9 103 29 118 23 141 0.86 # 4099 # 4545 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.584 3_3 - 707 ABC_ATPase PF09818.4 448 0.00015 12.9 0.2 1 2 0.00092 0.071 4.1 0.0 241 265 491 516 477 523 0.90 # 2352 # 4472 # -1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.374 3_3 - 707 ABC_ATPase PF09818.4 448 0.00015 12.9 0.2 2 2 0.00018 0.014 6.5 0.0 304 366 586 652 574 681 0.71 # 2352 # 4472 # -1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.374 1_8 - 176 SSB PF00436.20 104 7e-41 130.9 0.3 1 1 1.1e-42 8.7e-41 130.6 0.3 1 101 6 109 6 112 0.95 # 5588 # 6115 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.583 1_6 - 149 Methyltransf_18 PF12847.2 112 2e-08 27.4 0.0 1 1 6.1e-10 4.7e-08 26.2 0.0 4 105 53 142 50 145 0.87 # 4099 # 4545 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.584 2_6 - 1757 UvrD_C_2 PF13538.1 104 2.7e-08 26.5 1.0 1 2 0.013 1 2.2 0.0 6 44 1227 1265 1223 1295 0.74 # 5450 # 10720 # 1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.598 2_6 - 1757 UvrD_C_2 PF13538.1 104 2.7e-08 26.5 1.0 2 2 1.1e-08 8.5e-07 21.7 0.2 3 102 1341 1444 1339 1446 0.79 # 5450 # 10720 # 1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.598 3_3 - 707 DUF87 PF01935.12 229 0.0002 13.8 0.1 1 1 2.6e-06 0.0002 13.8 0.1 26 61 498 531 481 532 0.80 # 2352 # 4472 # -1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.374 3_3 - 707 AAA_22 PF13401.1 131 2.7e-05 16.9 0.3 1 1 2.3e-06 0.00018 14.2 0.3 7 106 498 642 492 667 0.66 # 2352 # 4472 # -1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.374 3_3 - 707 AAA_17 PF13207.1 121 4.2e-08 26.6 0.0 1 1 2.8e-09 1.1e-07 25.3 0.0 1 53 497 552 497 601 0.70 # 2352 # 4472 # -1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.374 2_5 - 718 AAA_17 PF13207.1 121 0.00023 14.5 0.0 1 1 2.3e-05 0.00089 12.6 0.0 3 27 189 217 187 262 0.68 # 3297 # 5450 # 1 # ID=2_5;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.524 3_3 - 707 AAA_21 PF13304.1 303 9.5e-10 31.3 0.1 1 1 6.9e-09 5.3e-07 22.3 0.1 2 297 498 662 497 667 0.87 # 2352 # 4472 # -1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.374 3_3 - 707 MobB PF03205.9 140 0.00062 12.0 0.4 1 1 4.5e-05 0.0017 10.6 0.1 2 21 497 516 496 524 0.87 # 2352 # 4472 # -1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.374 2_5 - 718 MobB PF03205.9 140 0.00088 11.5 0.0 1 1 5.1e-05 0.002 10.4 0.0 7 34 192 219 188 225 0.89 # 3297 # 5450 # 1 # ID=2_5;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.524 1_21 - 120 CTP_transf_2 PF01467.21 157 0.00073 12.1 0.0 1 1 1.1e-05 0.00083 12.0 0.0 32 64 7 38 2 93 0.70 # 15221 # 15580 # 1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.506 2_5 - 718 Zeta_toxin PF06414.7 201 0.00066 11.3 0.0 1 1 3.4e-05 0.0026 9.4 0.0 21 49 190 219 182 236 0.85 # 3297 # 5450 # 1 # ID=2_5;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.524 3_3 - 707 SMC_N PF02463.14 220 3.9e-09 28.5 1.5 1 2 0.0011 0.085 4.6 0.3 26 42 497 513 485 526 0.83 # 2352 # 4472 # -1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.374 3_3 - 707 SMC_N PF02463.14 220 3.9e-09 28.5 1.5 2 2 3.1e-09 2.4e-07 22.7 0.0 136 210 605 675 516 682 0.74 # 2352 # 4472 # -1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.374 2_5 - 718 AAA_16 PF13191.1 185 3.2e-06 19.7 0.0 1 1 3.9e-07 1.5e-05 17.6 0.0 21 60 182 222 179 263 0.81 # 3297 # 5450 # 1 # ID=2_5;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.524 3_3 - 707 AAA_16 PF13191.1 185 0.00018 14.1 0.0 1 1 1e-05 0.0004 12.9 0.0 24 106 495 587 489 660 0.57 # 2352 # 4472 # -1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.374 3_3 - 707 AAA_18 PF13238.1 129 4.5e-06 19.5 1.9 1 3 9.2e-07 7.1e-05 15.7 0.5 1 20 498 517 498 534 0.77 # 2352 # 4472 # -1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.374 3_3 - 707 AAA_18 PF13238.1 129 4.5e-06 19.5 1.9 2 3 0.094 7.3 -0.5 0.0 73 100 523 549 519 580 0.79 # 2352 # 4472 # -1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.374 3_3 - 707 AAA_18 PF13238.1 129 4.5e-06 19.5 1.9 3 3 0.046 3.5 0.5 0.0 47 91 632 672 614 682 0.79 # 2352 # 4472 # -1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.374 2_12 - 377 AAA_13 PF13166.1 712 0.00011 13.2 0.1 1 1 1.9e-06 0.00015 12.8 0.1 362 438 6 82 1 102 0.91 # 13993 # 15123 # 1 # ID=2_12;partial=01;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.599 1_6 - 149 Methyltransf_25 PF13649.1 101 0.00019 14.3 0.0 1 1 3.4e-06 0.00026 13.9 0.0 1 94 54 136 54 142 0.77 # 4099 # 4545 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.584 3_3 - 707 AAA_29 PF13555.1 62 3.6e-05 15.8 0.4 1 1 1.5e-06 0.00012 14.2 0.1 22 40 494 512 486 525 0.83 # 2352 # 4472 # -1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.374 1_6 - 149 N6_Mtase PF02384.11 311 0.00035 12.2 0.0 1 2 1e-05 0.00079 11.0 0.0 28 64 32 68 20 83 0.87 # 4099 # 4545 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.584 1_6 - 149 N6_Mtase PF02384.11 311 0.00035 12.2 0.0 2 2 0.099 7.6 -2.1 0.0 128 135 115 122 106 128 0.80 # 4099 # 4545 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.584 3_3 - 707 DUF258 PF03193.11 161 1.8e-05 16.5 0.7 1 2 2.2e-06 0.00017 13.3 0.0 26 66 485 526 467 531 0.79 # 2352 # 4472 # -1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.374 3_3 - 707 DUF258 PF03193.11 161 1.8e-05 16.5 0.7 2 2 0.019 1.5 0.5 0.0 23 49 581 607 561 608 0.81 # 2352 # 4472 # -1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.374 2_5 - 718 TraG-D_C PF12696.2 128 5.7e-21 67.3 0.0 1 1 1.3e-22 1e-20 66.4 0.0 1 127 419 541 419 542 0.86 # 3297 # 5450 # 1 # ID=2_5;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.524 1_6 - 149 Methyltransf_26 PF13659.1 117 7.4e-13 41.2 0.0 1 1 1.9e-14 1.4e-12 40.2 0.0 2 111 52 144 51 146 0.90 # 4099 # 4545 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.584 2_6 - 1757 AAA_30 PF13604.1 196 2.3e-44 143.8 15.6 1 2 1.9e-05 0.00072 11.7 3.8 7 147 420 552 416 562 0.84 # 5450 # 10720 # 1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.598 2_6 - 1757 AAA_30 PF13604.1 196 2.3e-44 143.8 15.6 2 2 1.1e-43 4.3e-42 136.4 2.5 1 186 968 1156 968 1160 0.93 # 5450 # 10720 # 1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.598 2_5 - 718 AAA_30 PF13604.1 196 0.00043 12.4 0.0 1 1 2.5e-05 0.00097 11.3 0.0 21 57 188 224 180 230 0.85 # 3297 # 5450 # 1 # ID=2_5;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.524 1_6 - 149 MTS PF05175.9 170 4.3e-08 25.2 0.0 1 1 7.6e-10 5.9e-08 24.8 0.0 31 115 50 129 41 140 0.85 # 4099 # 4545 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.584 1_6 - 149 Met_10 PF02475.11 200 0.00065 11.8 0.0 1 1 1.2e-05 0.00089 11.4 0.0 99 179 48 122 38 139 0.81 # 4099 # 4545 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.584 3_3 - 707 ABC_tran PF00005.22 137 2.6e-37 120.7 0.1 1 1 6.8e-39 5.2e-37 119.7 0.1 1 137 485 634 485 634 0.89 # 2352 # 4472 # -1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.374 2_6 - 1757 AAA_19 PF13245.1 76 9.4e-08 24.3 2.2 1 1 3.6e-09 2.8e-07 22.8 0.5 7 76 981 1047 974 1047 0.75 # 5450 # 10720 # 1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.598 2_5 - 718 AAA_10 PF12846.2 304 9.9e-11 34.1 0.0 1 1 4.7e-11 1.8e-09 29.9 0.0 3 296 187 494 186 500 0.68 # 3297 # 5450 # 1 # ID=2_5;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.524 3_3 - 707 AAA_10 PF12846.2 304 0.00014 13.8 0.1 1 2 2.7e-05 0.001 11.0 0.0 6 25 500 519 497 532 0.79 # 2352 # 4472 # -1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.374 3_3 - 707 AAA_10 PF12846.2 304 0.00014 13.8 0.1 2 2 0.06 2.3 0.0 0.0 217 257 620 659 594 674 0.70 # 2352 # 4472 # -1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.374 3_3 - 707 SbcCD_C PF13558.1 90 0.00042 12.8 0.1 1 1 5.2e-05 0.004 9.7 0.1 61 86 621 646 592 650 0.81 # 2352 # 4472 # -1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.374 1_6 - 149 Methyltransf_31 PF13847.1 152 0.00052 12.2 0.0 1 1 8.7e-06 0.00067 11.8 0.0 5 102 52 140 48 143 0.85 # 4099 # 4545 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.584 2_12 - 377 DUF3584 PF12128.3 1201 0.00023 11.1 2.1 1 1 3.9e-06 0.0003 10.7 2.1 304 377 12 86 5 100 0.87 # 13993 # 15123 # 1 # ID=2_12;partial=01;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.599 2_6 - 1757 Viral_helicase1 PF01443.13 234 0.00056 12.0 0.1 1 2 0.0002 0.015 7.3 0.0 1 32 988 1020 988 1162 0.75 # 5450 # 10720 # 1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.598 2_6 - 1757 Viral_helicase1 PF01443.13 234 0.00056 12.0 0.1 2 2 0.0098 0.75 1.7 0.0 174 234 1387 1447 1335 1447 0.61 # 5450 # 10720 # 1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.598 2_5 - 718 TrwB_AAD_bind PF10412.4 386 1.9e-150 493.3 0.0 1 1 3e-152 2.3e-150 493.0 0.0 2 386 172 561 171 561 0.99 # 3297 # 5450 # 1 # ID=2_5;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.524 2_6 - 1757 AAA_11 PF13086.1 236 5.1e-05 15.4 0.0 1 1 6.6e-07 5.1e-05 15.4 0.0 2 75 969 1039 968 1060 0.82 # 5450 # 10720 # 1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.598 2_5 - 718 T4SS-DNA_transf PF02534.9 469 3.3e-10 31.6 0.0 1 1 9.7e-12 7.5e-10 30.4 0.0 250 362 362 477 198 501 0.76 # 3297 # 5450 # 1 # ID=2_5;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.524 1_6 - 149 TIGR00755 TIGR00755 256 1.8e-09 29.4 0.0 1 1 3e-11 2.3e-09 29.1 0.0 8 104 29 122 24 132 0.90 # 4099 # 4545 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.584 3_3 - 707 ArgK PF03308.11 267 0.00018 12.8 0.0 1 1 4.4e-06 0.00034 11.9 0.0 15 52 481 518 473 528 0.84 # 2352 # 4472 # -1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.374 3_3 - 707 RNA_helicase PF00910.17 107 0.00087 12.0 0.8 1 2 0.00027 0.021 7.6 0.0 3 19 500 516 498 530 0.86 # 2352 # 4472 # -1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.374 3_3 - 707 RNA_helicase PF00910.17 107 0.00087 12.0 0.8 2 2 0.018 1.4 1.7 0.1 48 104 622 676 618 678 0.77 # 2352 # 4472 # -1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.374 3_3 - 707 AAA_25 PF13481.1 194 0.00016 13.6 0.0 1 2 2.3e-05 0.0018 10.2 0.0 29 50 491 512 482 532 0.88 # 2352 # 4472 # -1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.374 3_3 - 707 AAA_25 PF13481.1 194 0.00016 13.6 0.0 2 2 0.031 2.4 0.0 0.0 134 188 617 662 586 663 0.76 # 2352 # 4472 # -1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.374 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/6d8b850b-7143-41c1-8230-05db382b26e1 # Target file: checkm_output/bins/pm780/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm780/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/6d8b850b-7143-41c1-8230-05db382b26e1 checkm_output/bins/pm780/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 17:09:38 2020 # [ok]