# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 2_4 - 332 cobW PF02492.14 178 1.5e-06 20.1 0.0 1 1 4.1e-08 2.7e-06 19.2 0.0 3 45 161 202 159 257 0.77 # 1569 # 2564 # -1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 2_4 - 332 Parvo_NS1 PF01057.12 272 0.00057 11.1 0.0 1 1 1.4e-05 0.00096 10.4 0.0 104 138 148 182 140 188 0.90 # 1569 # 2564 # -1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 1_24 - 1079 Torsin PF06309.6 127 1.4e-05 17.3 0.0 1 1 6.4e-07 4.3e-05 15.8 0.0 19 85 460 526 452 537 0.83 # 15977 # 19213 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.528 2_4 - 332 IstB_IS21 PF01695.12 178 1.9e-05 16.5 0.0 1 1 4.5e-07 3e-05 15.8 0.0 44 73 155 184 127 201 0.82 # 1569 # 2564 # -1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 2_10 - 238 3HCDH_N PF02737.13 180 0.00089 11.3 1.9 1 2 0.00032 0.022 6.8 0.1 68 118 33 83 18 86 0.84 # 6869 # 7582 # -1 # ID=2_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.513 2_10 - 238 3HCDH_N PF02737.13 180 0.00089 11.3 1.9 2 2 0.0023 0.15 4.0 0.2 41 80 143 180 111 210 0.68 # 6869 # 7582 # -1 # ID=2_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.513 1_24 - 1079 UvrD_C_2 PF13538.1 104 1.7e-16 52.6 0.1 1 1 1e-17 7e-16 50.7 0.1 2 102 797 896 796 898 0.76 # 15977 # 19213 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.528 2_4 - 332 AAA_2 PF07724.9 171 3.8e-06 19.2 0.0 1 1 1e-07 6.9e-06 18.4 0.0 3 54 158 204 156 216 0.89 # 1569 # 2564 # -1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 1_23 - 510 DUF87 PF01935.12 229 7.4e-08 24.8 0.0 1 1 3.4e-09 1.1e-07 24.2 0.0 10 68 116 170 109 262 0.85 # 14448 # 15977 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.439 2_4 - 332 DUF87 PF01935.12 229 1.8e-06 20.3 0.0 1 1 9.7e-08 3.2e-06 19.4 0.0 9 61 144 195 138 196 0.78 # 1569 # 2564 # -1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 2_4 - 332 AAA_22 PF13401.1 131 1.8e-07 23.7 0.0 1 1 1.8e-08 4.1e-07 22.6 0.0 3 54 157 202 153 241 0.74 # 1569 # 2564 # -1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 2_11 - 867 AAA_22 PF13401.1 131 7e-05 15.3 0.0 1 1 7.5e-05 0.0017 10.9 0.0 5 28 492 515 489 549 0.85 # 7600 # 10200 # -1 # ID=2_11;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.498 1_24 - 1079 AAA_22 PF13401.1 131 0.00043 12.8 0.2 1 1 0.00022 0.005 9.4 0.2 4 125 494 598 490 603 0.81 # 15977 # 19213 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.528 2_23 - 478 DNA_methylase PF00145.12 335 1.5e-79 259.8 0.0 1 1 4.4e-81 3e-79 258.8 0.0 1 331 96 457 96 460 0.86 # 14616 # 16049 # 1 # ID=2_23;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=3-4bp;gc_cont=0.482 2_4 - 332 AAA_17 PF13207.1 121 0.00027 14.1 0.1 1 1 2.8e-05 0.00064 12.9 0.1 2 40 161 195 160 229 0.75 # 1569 # 2564 # -1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 1_23 - 510 AAA_17 PF13207.1 121 0.00037 13.7 0.1 1 1 6.7e-05 0.0015 11.7 0.0 4 42 131 191 129 260 0.58 # 14448 # 15977 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.439 2_11 - 867 AAA_17 PF13207.1 121 0.00037 13.7 3.9 1 1 0.00023 0.005 10.0 0.0 3 21 495 513 494 565 0.80 # 7600 # 10200 # -1 # ID=2_11;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.498 2_4 - 332 MobB PF03205.9 140 5.9e-06 18.4 1.9 1 1 1.5e-07 1e-05 17.6 0.3 2 39 160 196 159 201 0.83 # 1569 # 2564 # -1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 1_24 - 1079 PhoH PF02562.11 205 2e-09 29.3 4.5 1 2 1.1e-06 3.6e-05 15.4 0.3 6 39 479 514 475 536 0.78 # 15977 # 19213 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.528 1_24 - 1079 PhoH PF02562.11 205 2e-09 29.3 4.5 2 2 3e-06 0.0001 13.9 0.1 120 162 562 605 553 635 0.82 # 15977 # 19213 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.528 2_4 - 332 PhoH PF02562.11 205 0.00021 12.9 0.0 1 1 1.1e-05 0.00038 12.1 0.0 14 45 153 184 143 210 0.79 # 1569 # 2564 # -1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 2_4 - 332 AAA_7 PF12775.2 272 6.6e-05 14.4 0.0 1 1 2.3e-06 0.00016 13.2 0.0 25 64 150 189 139 209 0.86 # 1569 # 2564 # -1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 2_4 - 332 T2SE PF00437.15 272 2.1e-52 170.0 0.1 1 1 7.4e-54 2.5e-52 169.7 0.1 3 271 10 311 8 312 0.94 # 1569 # 2564 # -1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 1_23 - 510 T2SE PF00437.15 272 0.00059 11.1 0.1 1 1 3.1e-05 0.001 10.3 0.1 130 149 128 147 103 160 0.84 # 14448 # 15977 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.439 2_4 - 332 Zeta_toxin PF06414.7 201 1e-06 20.3 0.0 1 1 2.7e-08 1.8e-06 19.5 0.0 12 51 154 193 145 204 0.86 # 1569 # 2564 # -1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 2_4 - 332 Arch_ATPase PF01637.13 234 5.9e-06 18.4 0.0 1 1 1.6e-07 1.1e-05 17.6 0.0 15 68 155 205 149 226 0.87 # 1569 # 2564 # -1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 2_4 - 332 AAA_16 PF13191.1 185 4.5e-07 22.3 0.0 1 1 3.4e-08 1.1e-06 21.0 0.0 24 61 158 195 149 274 0.82 # 1569 # 2564 # -1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 2_11 - 867 AAA_16 PF13191.1 185 0.00067 12.0 0.0 1 1 0.00018 0.006 8.9 0.0 25 47 492 514 481 574 0.85 # 7600 # 10200 # -1 # ID=2_11;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.498 2_4 - 332 AAA_23 PF13476.1 202 0.0003 13.5 0.0 1 1 2.2e-05 0.00048 12.8 0.0 19 39 158 178 105 184 0.91 # 1569 # 2564 # -1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 2_11 - 867 AAA_23 PF13476.1 202 0.0032 10.1 0.0 1 1 0.00014 0.0032 10.1 0.0 22 39 494 511 464 521 0.84 # 7600 # 10200 # -1 # ID=2_11;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.498 2_10 - 238 AAA_23 PF13476.1 202 0.05 6.2 13.9 1 1 0.00027 0.0061 9.2 1.7 97 196 67 185 58 218 0.59 # 6869 # 7582 # -1 # ID=2_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.513 2_4 - 332 AAA_18 PF13238.1 129 3.2e-06 19.9 0.0 1 1 2e-07 6.5e-06 18.8 0.0 1 29 161 194 161 213 0.77 # 1569 # 2564 # -1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 1_23 - 510 AAA_18 PF13238.1 129 8.6e-05 15.2 0.0 1 1 5.2e-06 0.00017 14.2 0.0 3 21 131 149 130 238 0.78 # 14448 # 15977 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.439 1_20 - 239 CbiA PF01656.18 195 2.8e-06 19.2 0.6 1 2 0.0004 0.027 6.2 0.1 1 19 3 21 3 25 0.89 # 12395 # 13111 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.418 1_20 - 239 CbiA PF01656.18 195 2.8e-06 19.2 0.6 2 2 9.1e-06 0.00061 11.5 0.0 109 165 81 142 29 173 0.76 # 12395 # 13111 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.418 2_4 - 332 KaiC PF06745.8 227 0.00011 13.6 0.0 1 1 3e-06 0.0002 12.8 0.0 16 53 155 190 148 240 0.77 # 1569 # 2564 # -1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 1_23 - 510 AAA_14 PF13173.1 128 8.3e-06 18.1 0.0 1 2 4.3e-06 0.00014 14.1 0.0 6 89 130 213 125 234 0.76 # 14448 # 15977 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.439 1_23 - 510 AAA_14 PF13173.1 128 8.3e-06 18.1 0.0 2 2 0.043 1.5 1.1 0.0 53 81 340 372 300 391 0.57 # 14448 # 15977 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.439 2_4 - 332 AAA_14 PF13173.1 128 0.00018 13.7 0.1 1 2 0.0044 0.15 4.3 0.0 64 96 135 165 98 166 0.69 # 1569 # 2564 # -1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 2_4 - 332 AAA_14 PF13173.1 128 0.00018 13.7 0.1 2 2 6.3e-05 0.0021 10.3 0.0 2 35 158 191 157 213 0.80 # 1569 # 2564 # -1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 2_4 - 332 GvpD PF07088.6 484 1.7e-06 18.9 0.0 1 1 3.9e-08 2.6e-06 18.3 0.0 10 89 158 241 150 262 0.76 # 1569 # 2564 # -1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 2_4 - 332 AAA_29 PF13555.1 62 0.00067 11.6 0.0 1 1 2.3e-05 0.0016 10.4 0.0 19 43 157 178 145 188 0.75 # 1569 # 2564 # -1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 1_24 - 1079 AAA PF00004.24 132 2.2e-06 20.3 0.9 1 1 1.3e-07 8.6e-06 18.3 0.1 4 111 500 600 497 612 0.73 # 15977 # 19213 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.528 2_4 - 332 Sigma54_activat PF00158.21 168 5.7e-06 18.2 0.0 1 1 3.1e-07 1e-05 17.4 0.0 14 54 150 190 138 213 0.82 # 1569 # 2564 # -1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 1_24 - 1079 Sigma54_activat PF00158.21 168 0.00011 14.0 0.4 1 1 9.4e-06 0.00032 12.6 0.4 7 130 479 600 473 606 0.80 # 15977 # 19213 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.528 2_4 - 332 MMR_HSR1 PF01926.18 116 0.00029 13.2 0.0 1 1 7.1e-06 0.00048 12.5 0.0 2 41 161 205 160 310 0.84 # 1569 # 2564 # -1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 2_4 - 332 DUF258 PF03193.11 161 7.4e-05 14.3 0.0 1 1 2e-06 0.00014 13.5 0.0 29 61 151 184 129 224 0.81 # 1569 # 2564 # -1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 1_23 - 510 TraG-D_C PF12696.2 128 9.1e-22 69.7 0.0 1 1 2.2e-23 1.5e-21 69.0 0.0 1 127 350 471 350 472 0.80 # 14448 # 15977 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.439 2_4 - 332 AAA_33 PF13671.1 143 0.00025 13.3 0.0 1 1 5.9e-06 0.0004 12.6 0.0 2 26 161 188 160 256 0.81 # 1569 # 2564 # -1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 1_24 - 1079 AAA_30 PF13604.1 196 1.5e-53 173.6 7.3 1 1 1.7e-54 5.6e-53 171.7 6.1 1 192 477 660 477 663 0.97 # 15977 # 19213 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.528 2_4 - 332 AAA_30 PF13604.1 196 0.0001 14.3 0.1 1 2 4.7e-05 0.0016 10.4 0.1 11 51 151 190 145 197 0.80 # 1569 # 2564 # -1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 2_4 - 332 AAA_30 PF13604.1 196 0.0001 14.3 0.1 2 2 0.024 0.79 1.6 0.0 121 178 204 258 191 272 0.77 # 1569 # 2564 # -1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 2_4 - 332 FtsK_SpoIIIE PF01580.13 205 5.8e-07 21.5 0.0 1 1 5.1e-08 1.1e-06 20.5 0.0 38 64 158 184 139 191 0.81 # 1569 # 2564 # -1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 2_11 - 867 FtsK_SpoIIIE PF01580.13 205 7.9e-06 17.8 0.0 1 1 8.1e-07 1.8e-05 16.6 0.0 21 62 462 515 445 522 0.82 # 7600 # 10200 # -1 # ID=2_11;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.498 1_23 - 510 FtsK_SpoIIIE PF01580.13 205 0.00043 12.1 0.0 1 1 3.4e-05 0.00076 11.3 0.0 39 59 124 147 95 153 0.78 # 14448 # 15977 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.439 2_4 - 332 ABC_tran PF00005.22 137 1e-06 21.4 0.0 1 1 5e-08 1.7e-06 20.8 0.0 6 45 153 192 150 257 0.87 # 1569 # 2564 # -1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 2_11 - 867 ABC_tran PF00005.22 137 0.00045 12.9 0.0 1 1 4.6e-05 0.0015 11.2 0.0 14 38 494 518 481 550 0.83 # 7600 # 10200 # -1 # ID=2_11;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.498 2_4 - 332 ATP-synt_ab PF00006.20 215 0.00036 12.4 0.0 1 1 8.8e-06 0.00059 11.7 0.0 16 62 159 205 151 247 0.86 # 1569 # 2564 # -1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 2_4 - 332 AAA_19 PF13245.1 76 0.00043 12.4 0.1 1 1 2.8e-05 0.00093 11.3 0.1 5 48 153 191 149 224 0.78 # 1569 # 2564 # -1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 1_24 - 1079 AAA_19 PF13245.1 76 0.0016 10.6 3.7 1 2 0.00056 0.019 7.2 0.2 2 75 485 551 484 552 0.75 # 15977 # 19213 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.528 1_24 - 1079 AAA_19 PF13245.1 76 0.0016 10.6 3.7 2 2 0.027 0.91 1.7 0.0 17 32 706 721 705 731 0.82 # 15977 # 19213 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.528 1_24 - 1079 Helicase_RecD PF05127.9 177 1.3e-05 17.2 4.8 1 2 0.00059 0.04 5.9 0.1 122 146 498 522 481 539 0.76 # 15977 # 19213 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.528 1_24 - 1079 Helicase_RecD PF05127.9 177 1.3e-05 17.2 4.8 2 2 8.1e-06 0.00054 12.0 0.1 75 114 548 585 529 653 0.69 # 15977 # 19213 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.528 2_11 - 867 AAA_10 PF12846.2 304 1.6e-35 115.3 0.1 1 1 2.4e-36 5.3e-35 113.6 0.0 2 292 492 772 491 780 0.84 # 7600 # 10200 # -1 # ID=2_11;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.498 1_23 - 510 AAA_10 PF12846.2 304 3.6e-07 22.2 0.1 1 2 2.1e-05 0.00046 12.0 0.1 3 41 128 166 126 177 0.92 # 14448 # 15977 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.439 1_23 - 510 AAA_10 PF12846.2 304 3.6e-07 22.2 0.1 2 2 0.00034 0.0075 8.0 0.0 214 286 339 414 307 431 0.75 # 14448 # 15977 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.439 2_4 - 332 AAA_10 PF12846.2 304 0.00018 13.3 0.0 1 1 1.2e-05 0.00027 12.7 0.0 3 29 160 185 158 233 0.81 # 1569 # 2564 # -1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 2_4 - 332 ResIII PF04851.10 184 4.1e-06 19.0 0.0 1 1 9.8e-08 6.5e-06 18.4 0.0 22 61 148 196 104 202 0.81 # 1569 # 2564 # -1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 1_24 - 1079 Viral_helicase1 PF01443.13 234 4.6e-15 48.1 5.4 1 2 2.3e-08 1.5e-06 20.2 0.0 3 104 499 605 497 654 0.74 # 15977 # 19213 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.528 1_24 - 1079 Viral_helicase1 PF01443.13 234 4.6e-15 48.1 5.4 2 2 3e-11 2e-09 29.6 0.5 157 234 818 899 774 899 0.74 # 15977 # 19213 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.528 2_4 - 332 DUF2075 PF09848.4 352 6.1e-05 14.4 0.0 1 1 1.3e-06 8.7e-05 13.9 0.0 1 32 158 187 158 216 0.76 # 1569 # 2564 # -1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 2_4 - 332 DEAD PF00270.24 169 2e-06 19.7 0.0 1 1 5.7e-08 3.8e-06 18.8 0.0 13 70 157 211 144 242 0.78 # 1569 # 2564 # -1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 1_23 - 510 TrwB_AAD_bind PF10412.4 386 7e-119 389.1 0.0 1 1 3.7e-120 8.3e-119 388.9 0.0 1 385 112 490 112 491 0.95 # 14448 # 15977 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.439 2_11 - 867 TrwB_AAD_bind PF10412.4 386 6.2e-07 20.6 1.6 1 2 1.5e-06 3.3e-05 14.9 0.0 16 51 492 527 484 536 0.92 # 7600 # 10200 # -1 # ID=2_11;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.498 2_11 - 867 TrwB_AAD_bind PF10412.4 386 6.2e-07 20.6 1.6 2 2 0.0042 0.094 3.5 0.0 102 168 741 806 720 812 0.79 # 7600 # 10200 # -1 # ID=2_11;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.498 2_4 - 332 TrwB_AAD_bind PF10412.4 386 9.2e-06 16.8 0.1 1 1 6.4e-07 1.4e-05 16.1 0.1 14 49 157 191 150 202 0.81 # 1569 # 2564 # -1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 2_4 - 332 Sigma54_activ_2 PF14532.1 138 1.6e-06 20.6 0.0 1 1 5e-08 3.4e-06 19.5 0.0 14 65 151 202 145 212 0.92 # 1569 # 2564 # -1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 1_23 - 510 T4SS-DNA_transf PF02534.9 469 3.6e-12 37.8 0.0 1 1 7.9e-14 5.3e-12 37.3 0.0 263 426 313 472 297 500 0.74 # 14448 # 15977 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.439 2_4 - 332 Pox_A32 PF04665.7 241 6.7e-05 14.6 0.0 1 1 1.7e-06 0.00011 13.8 0.0 12 46 157 191 150 210 0.85 # 1569 # 2564 # -1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 1_24 - 1079 PIF1 PF05970.9 364 1.6e-06 19.6 0.1 1 2 1.6e-07 1.1e-05 16.9 0.0 2 65 478 537 477 588 0.85 # 15977 # 19213 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.528 1_24 - 1079 PIF1 PF05970.9 364 1.6e-06 19.6 0.1 2 2 0.087 5.9 -2.0 0.0 334 363 795 823 782 824 0.84 # 15977 # 19213 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.528 2_4 - 332 GTP_EFTU PF00009.22 188 0.00015 13.6 0.2 1 1 3.5e-06 0.00023 12.9 0.2 2 32 157 187 156 205 0.83 # 1569 # 2564 # -1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 2_4 - 332 RNA_helicase PF00910.17 107 1.3e-05 17.7 0.1 1 2 3.5e-06 0.00023 13.7 0.0 1 25 161 185 161 242 0.75 # 1569 # 2564 # -1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 2_4 - 332 RNA_helicase PF00910.17 107 1.3e-05 17.7 0.1 2 2 0.027 1.8 1.2 0.1 69 100 290 322 281 328 0.78 # 1569 # 2564 # -1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 2_4 - 332 UPF0079 PF02367.12 123 4.1e-06 18.8 0.0 1 1 1.2e-07 8.2e-06 17.8 0.0 9 45 152 188 145 193 0.85 # 1569 # 2564 # -1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 2_4 - 332 Myosin_head PF00063.16 689 0.00011 12.7 0.0 1 1 2.2e-06 0.00015 12.2 0.0 84 110 157 183 147 209 0.90 # 1569 # 2564 # -1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 2_4 - 332 NACHT PF05729.7 166 6e-05 15.1 0.0 1 1 1.9e-06 0.00013 14.0 0.0 1 27 159 185 159 188 0.90 # 1569 # 2564 # -1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 1_24 - 1079 Herpes_Helicase PF02689.9 819 1.3e-05 15.4 0.0 1 2 0.0014 0.092 2.7 0.0 173 208 539 574 515 584 0.81 # 15977 # 19213 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.528 1_24 - 1079 Herpes_Helicase PF02689.9 819 1.3e-05 15.4 0.0 2 2 9.3e-06 0.00062 9.9 0.0 739 782 850 894 831 914 0.80 # 15977 # 19213 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.528 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/610122b5-4590-4ba1-9cd0-0dc5feb648a2 # Target file: checkm_output/bins/pm78/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm78/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/610122b5-4590-4ba1-9cd0-0dc5feb648a2 checkm_output/bins/pm78/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 17:09:38 2020 # [ok]