# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_76 - 228 UPF0020 PF01170.13 180 2.8e-06 19.6 0.0 1 2 7.6e-05 0.0061 8.7 0.0 102 124 16 38 2 89 0.67 # 63536 # 64219 # 1 # ID=1_76;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.572 1_76 - 228 UPF0020 PF01170.13 180 2.8e-06 19.6 0.0 2 2 6.3e-05 0.005 9.0 0.0 28 54 163 189 158 220 0.67 # 63536 # 64219 # 1 # ID=1_76;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.572 1_27 - 501 Rad17 PF03215.10 519 5.7e-05 14.5 0.0 1 1 1e-06 8.4e-05 13.9 0.0 38 64 244 270 238 312 0.81 # 20368 # 21870 # 1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.535 1_71 - 402 MipZ PF09140.6 261 3.3e-06 18.9 0.5 1 2 4.1e-05 0.0033 9.1 0.0 1 50 110 164 110 190 0.77 # 59387 # 60592 # 1 # ID=1_71;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.454 1_71 - 402 MipZ PF09140.6 261 3.3e-06 18.9 0.5 2 2 0.00012 0.0093 7.6 0.1 90 135 237 282 227 287 0.89 # 59387 # 60592 # 1 # ID=1_71;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.454 1_27 - 501 AAA_22 PF13401.1 131 3.9e-06 19.6 0.0 1 1 1.4e-07 1.1e-05 18.2 0.0 4 53 251 295 248 352 0.79 # 20368 # 21870 # 1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.535 1_76 - 228 Methyltransf_11 PF08241.7 95 0.00076 12.6 0.0 1 2 0.0037 0.3 4.3 0.0 78 93 53 68 48 70 0.82 # 63536 # 64219 # 1 # ID=1_76;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.572 1_76 - 228 Methyltransf_11 PF08241.7 95 0.00076 12.6 0.0 2 2 0.0014 0.11 5.7 0.0 5 54 172 220 168 226 0.82 # 63536 # 64219 # 1 # ID=1_76;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.572 1_76 - 228 N6_N4_Mtase PF01555.13 231 8.1e-37 119.4 0.0 1 1 4.5e-36 3.6e-34 110.8 0.0 1 228 21 200 21 203 0.89 # 63536 # 64219 # 1 # ID=1_76;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.572 1_27 - 501 AAA_17 PF13207.1 121 9.2e-06 19.1 0.1 1 1 5.8e-07 4.7e-05 16.8 0.0 1 24 253 276 253 354 0.74 # 20368 # 21870 # 1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.535 1_27 - 501 MobB PF03205.9 140 0.00017 13.9 0.0 1 1 4.1e-06 0.00032 13.0 0.0 2 35 253 286 252 295 0.88 # 20368 # 21870 # 1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.535 1_71 - 402 ArsA_ATPase PF02374.10 305 0.00026 12.7 0.0 1 1 7.8e-06 0.00062 11.4 0.0 4 136 113 255 110 257 0.67 # 59387 # 60592 # 1 # ID=1_71;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.454 1_27 - 501 T2SE PF00437.15 272 4.2e-90 293.9 3.5 1 1 7.1e-92 5.6e-90 293.4 3.5 3 271 124 389 122 390 0.98 # 20368 # 21870 # 1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.535 1_27 - 501 Zeta_toxin PF06414.7 201 0.00031 12.5 0.0 1 1 7.1e-06 0.00057 11.6 0.0 18 48 253 285 238 289 0.83 # 20368 # 21870 # 1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.535 1_71 - 402 VirC1 PF07015.6 231 0.00047 11.8 0.0 1 2 0.015 1.2 0.7 0.0 4 26 112 134 101 143 0.82 # 59387 # 60592 # 1 # ID=1_71;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.454 1_71 - 402 VirC1 PF07015.6 231 0.00047 11.8 0.0 2 2 6.8e-05 0.0054 8.4 0.0 83 154 245 322 232 361 0.70 # 59387 # 60592 # 1 # ID=1_71;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.454 1_71 - 402 Fer4_NifH PF00142.13 273 9.6e-06 17.5 0.0 1 1 2.3e-07 1.8e-05 16.6 0.0 7 67 117 182 112 195 0.80 # 59387 # 60592 # 1 # ID=1_71;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.454 1_27 - 501 Arch_ATPase PF01637.13 234 0.0001 14.6 0.0 1 1 2.2e-06 0.00018 13.9 0.0 15 68 247 299 241 341 0.73 # 20368 # 21870 # 1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.535 1_27 - 501 AAA_16 PF13191.1 185 3.5e-08 26.2 0.7 1 2 0.023 1.8 1.1 0.1 40 121 120 182 119 222 0.72 # 20368 # 21870 # 1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.535 1_27 - 501 AAA_16 PF13191.1 185 3.5e-08 26.2 0.7 2 2 4.1e-09 3.3e-07 23.0 0.1 15 119 242 355 237 404 0.71 # 20368 # 21870 # 1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.535 1_27 - 501 AAA_23 PF13476.1 202 4.6e-06 19.6 0.0 1 1 1.1e-07 8.8e-06 18.7 0.0 18 38 250 270 236 282 0.84 # 20368 # 21870 # 1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.535 1_27 - 501 AAA_18 PF13238.1 129 2.7e-06 20.3 0.0 1 2 0.037 3 0.8 0.1 25 110 61 150 43 190 0.74 # 20368 # 21870 # 1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.535 1_27 - 501 AAA_18 PF13238.1 129 2.7e-06 20.3 0.0 2 2 3.5e-07 2.8e-05 17.0 0.0 1 69 254 328 254 389 0.64 # 20368 # 21870 # 1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.535 1_71 - 402 CbiA PF01656.18 195 1.3e-23 75.9 0.0 1 1 3e-25 2.4e-23 75.1 0.0 1 158 112 319 112 351 0.71 # 59387 # 60592 # 1 # ID=1_71;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.454 1_27 - 501 AAA_14 PF13173.1 128 5.6e-06 18.9 0.0 1 1 1.4e-07 1.1e-05 17.9 0.0 3 103 252 362 250 368 0.65 # 20368 # 21870 # 1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.535 1_27 - 501 AAA_29 PF13555.1 62 6e-07 21.6 0.0 1 1 1.8e-08 1.4e-06 20.4 0.0 22 51 251 279 241 284 0.83 # 20368 # 21870 # 1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.535 1_71 - 402 AAA_31 PF13614.1 157 2.5e-08 26.6 0.1 1 2 1.1e-05 0.00089 11.8 0.0 2 91 111 205 110 225 0.85 # 59387 # 60592 # 1 # ID=1_71;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.454 1_71 - 402 AAA_31 PF13614.1 157 2.5e-08 26.6 0.1 2 2 1.1e-05 0.00085 11.9 0.0 109 148 237 275 227 280 0.87 # 59387 # 60592 # 1 # ID=1_71;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.454 1_27 - 501 NTPase_1 PF03266.10 168 0.00035 12.9 0.1 1 2 2.8e-05 0.0022 10.3 0.0 2 26 254 278 253 286 0.86 # 20368 # 21870 # 1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.535 1_27 - 501 NTPase_1 PF03266.10 168 0.00035 12.9 0.1 2 2 0.051 4 -0.3 0.0 82 108 306 333 293 367 0.59 # 20368 # 21870 # 1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.535 1_27 - 501 AAA_33 PF13671.1 143 0.00043 12.8 0.0 1 1 2.4e-05 0.0019 10.7 0.0 2 75 254 325 253 343 0.60 # 20368 # 21870 # 1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.535 1_76 - 228 Methyltransf_26 PF13659.1 117 2.9e-13 42.5 0.1 1 2 8.9e-09 7.1e-07 21.9 0.0 53 112 3 69 2 74 0.75 # 63536 # 64219 # 1 # ID=1_76;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.572 1_76 - 228 Methyltransf_26 PF13659.1 117 2.9e-13 42.5 0.1 2 2 1e-07 8.2e-06 18.5 0.0 4 44 167 206 164 222 0.82 # 63536 # 64219 # 1 # ID=1_76;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.572 1_16 - 274 AAA_30 PF13604.1 196 2.2e-05 16.7 3.6 1 1 8.2e-07 3.3e-05 16.1 3.6 8 133 3 122 2 140 0.83 # 9302 # 10123 # 1 # ID=1_16;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.613 1_27 - 501 AAA_30 PF13604.1 196 0.00024 13.3 0.0 1 1 1.3e-05 0.00054 12.1 0.0 8 49 241 282 235 285 0.80 # 20368 # 21870 # 1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.535 1_27 - 501 ABC_tran PF00005.22 137 2.5e-05 17.2 0.0 1 1 7.2e-07 5.8e-05 16.0 0.0 13 61 253 305 248 376 0.68 # 20368 # 21870 # 1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.535 1_76 - 228 Cons_hypoth95 PF03602.10 183 5e-06 18.6 0.0 1 2 0.00019 0.015 7.2 0.0 112 148 18 56 2 82 0.63 # 63536 # 64219 # 1 # ID=1_76;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.572 1_76 - 228 Cons_hypoth95 PF03602.10 183 5e-06 18.6 0.0 2 2 3.9e-05 0.0031 9.5 0.0 41 62 162 183 145 219 0.78 # 63536 # 64219 # 1 # ID=1_76;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.572 1_27 - 501 AAA_19 PF13245.1 76 6e-07 21.8 0.0 1 1 3.4e-08 2.8e-06 19.7 0.0 4 35 244 276 241 296 0.82 # 20368 # 21870 # 1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.535 1_27 - 501 AAA_10 PF12846.2 304 0.0004 12.4 0.0 1 1 9e-06 0.00072 11.6 0.0 4 37 254 288 251 306 0.80 # 20368 # 21870 # 1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.535 1_27 - 501 AAA_11 PF13086.1 236 7.8e-05 14.9 0.0 1 1 1.9e-06 0.00015 13.9 0.0 9 106 242 338 235 403 0.67 # 20368 # 21870 # 1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.535 1_39 - 75 Ribosomal_S11 PF00411.14 110 0.00018 14.3 0.0 1 1 2.3e-06 0.00018 14.3 0.0 33 83 10 59 4 70 0.82 # 29377 # 29601 # -1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.462 1_76 - 228 MethyltransfD12 PF02086.10 260 0.00046 12.3 0.0 1 2 0.023 1.8 0.4 0.0 178 188 21 31 13 87 0.85 # 63536 # 64219 # 1 # ID=1_76;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.572 1_76 - 228 MethyltransfD12 PF02086.10 260 0.00046 12.3 0.0 2 2 4e-05 0.0032 9.5 0.0 20 46 163 189 148 197 0.78 # 63536 # 64219 # 1 # ID=1_76;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.572 1_27 - 501 AAA_25 PF13481.1 194 0.00016 13.7 0.0 1 1 6.1e-06 0.00049 12.1 0.0 17 53 235 271 222 290 0.81 # 20368 # 21870 # 1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.535 1_76 - 228 Methyltransf_15 PF09445.5 164 0.00022 13.4 0.0 1 2 0.012 0.99 1.5 0.0 53 80 4 30 2 34 0.91 # 63536 # 64219 # 1 # ID=1_76;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.572 1_76 - 228 Methyltransf_15 PF09445.5 164 0.00022 13.4 0.0 2 2 4.3e-05 0.0035 9.5 0.0 3 31 166 194 164 208 0.86 # 63536 # 64219 # 1 # ID=1_76;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.572 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/5febedf7-2684-4874-8c57-bfdcb59bc3c8 # Target file: checkm_output/bins/pm749/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm749/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/5febedf7-2684-4874-8c57-bfdcb59bc3c8 checkm_output/bins/pm749/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 17:09:21 2020 # [ok]