# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_66 - 188 Methyltransf_12 PF08242.7 99 0.00012 16.0 0.0 1 1 1.5e-06 0.00022 15.2 0.0 1 99 55 144 55 144 0.85 # 51541 # 52104 # -1 # ID=1_66;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.583 1_76 - 228 UPF0020 PF01170.13 180 1e-05 18.6 0.0 1 2 0.00016 0.024 7.6 0.0 104 119 18 33 7 88 0.73 # 57810 # 58493 # -1 # ID=1_76;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.572 1_76 - 228 UPF0020 PF01170.13 180 1e-05 18.6 0.0 2 2 6.3e-05 0.0091 9.0 0.0 28 54 163 189 158 220 0.67 # 57810 # 58493 # -1 # ID=1_76;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.572 1_66 - 188 RrnaAD PF00398.15 262 3.2e-08 26.3 0.0 1 1 2.7e-10 3.9e-08 26.0 0.0 9 105 29 120 24 148 0.85 # 51541 # 52104 # -1 # ID=1_66;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.583 2_2 - 249 IstB_IS21 PF01695.12 178 1.1e-61 200.8 0.0 1 1 9.2e-64 1.3e-61 200.5 0.0 2 176 53 227 52 229 0.98 # 461 # 1207 # 1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.487 4_4 - 215 MipZ PF09140.6 261 3.4e-08 26.2 2.3 1 2 0.0008 0.12 4.8 0.5 7 25 8 26 2 38 0.71 # 735 # 1379 # -1 # ID=4_4;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.429 4_4 - 215 MipZ PF09140.6 261 3.4e-08 26.2 2.3 2 2 9e-09 1.3e-06 21.1 0.1 70 133 45 108 25 125 0.84 # 735 # 1379 # -1 # ID=4_4;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.429 1_64 - 176 SSB PF00436.20 104 2.9e-41 133.0 0.3 1 1 2.5e-43 3.7e-41 132.7 0.3 1 101 6 109 6 112 0.96 # 50087 # 50614 # -1 # ID=1_64;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.583 1_66 - 188 Methyltransf_18 PF12847.2 112 5.5e-10 33.3 0.0 1 1 8.1e-12 1.2e-09 32.2 0.0 4 109 53 146 50 148 0.88 # 51541 # 52104 # -1 # ID=1_66;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.583 1_20 - 1757 UvrD_C_2 PF13538.1 104 2.3e-07 24.4 0.7 1 2 0.014 2 2.1 0.0 6 43 1227 1264 1223 1294 0.75 # 11144 # 16414 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.599 1_20 - 1757 UvrD_C_2 PF13538.1 104 2.3e-07 24.4 0.7 2 2 5.2e-08 7.5e-06 19.5 0.2 3 102 1341 1444 1339 1446 0.77 # 11144 # 16414 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.599 1_40 - 876 DUF87 PF01935.12 229 1.1e-07 25.3 0.0 1 1 2.2e-09 3.2e-07 23.8 0.0 26 222 482 669 468 676 0.77 # 33013 # 35640 # -1 # ID=1_40;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.544 2_18 - 210 AAA_22 PF13401.1 131 5.4e-06 20.0 0.4 1 1 3.4e-07 2.5e-05 17.9 0.4 3 123 26 191 23 198 0.65 # 12381 # 13010 # -1 # ID=2_18;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.313 2_2 - 249 AAA_22 PF13401.1 131 0.00012 15.7 0.2 1 1 4.9e-06 0.00035 14.1 0.2 5 49 99 138 95 183 0.80 # 461 # 1207 # 1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.487 1_76 - 228 Methyltransf_11 PF08241.7 95 0.001 13.0 0.0 1 2 0.0024 0.35 4.9 0.0 78 93 53 68 48 70 0.84 # 57810 # 58493 # -1 # ID=1_76;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.572 1_76 - 228 Methyltransf_11 PF08241.7 95 0.001 13.0 0.0 2 2 0.0014 0.2 5.7 0.0 5 54 172 220 168 226 0.82 # 57810 # 58493 # -1 # ID=1_76;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.572 2_2 - 249 SRP54 PF00448.17 196 0.00033 13.6 0.1 1 2 2.8e-05 0.004 10.0 0.1 3 33 100 130 98 136 0.92 # 461 # 1207 # 1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.487 2_2 - 249 SRP54 PF00448.17 196 0.00033 13.6 0.1 2 2 0.013 1.9 1.3 0.0 82 124 158 200 151 218 0.87 # 461 # 1207 # 1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.487 2_18 - 210 AAA_15 PF13175.1 415 3.3e-09 29.6 9.4 1 2 3.8e-07 5.5e-05 15.7 7.9 6 90 11 95 6 136 0.72 # 12381 # 13010 # -1 # ID=2_18;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.313 2_18 - 210 AAA_15 PF13175.1 415 3.3e-09 29.6 9.4 2 2 1.8e-06 0.00026 13.5 0.0 366 414 152 196 139 197 0.86 # 12381 # 13010 # -1 # ID=2_18;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.313 1_76 - 228 N6_N4_Mtase PF01555.13 231 1.3e-36 119.6 0.0 1 2 1.9e-15 2.7e-13 43.3 0.0 1 114 21 124 21 133 0.89 # 57810 # 58493 # -1 # ID=1_76;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.572 1_76 - 228 N6_N4_Mtase PF01555.13 231 1.3e-36 119.6 0.0 2 2 5.3e-25 7.6e-23 74.6 0.0 169 228 141 200 126 203 0.90 # 57810 # 58493 # -1 # ID=1_76;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.572 2_2 - 249 AAA_17 PF13207.1 121 2.8e-06 21.6 0.5 1 1 1.3e-07 6.1e-06 20.5 0.1 2 64 101 173 100 231 0.62 # 461 # 1207 # 1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.487 2_18 - 210 AAA_17 PF13207.1 121 0.00044 14.5 0.6 1 1 2.5e-05 0.0012 13.1 0.4 3 17 31 45 31 48 0.89 # 12381 # 13010 # -1 # ID=2_18;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.313 1_21 - 784 AAA_17 PF13207.1 121 0.00054 14.2 0.0 1 1 2.6e-05 0.0013 13.0 0.0 3 28 189 218 187 317 0.71 # 16414 # 18765 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.524 2_18 - 210 AAA_21 PF13304.1 303 4.7e-19 62.8 4.7 1 2 2.8e-08 2.1e-06 21.3 3.0 1 62 29 88 29 109 0.72 # 12381 # 13010 # -1 # ID=2_18;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.313 2_18 - 210 AAA_21 PF13304.1 303 4.7e-19 62.8 4.7 2 2 1.1e-14 8e-13 42.3 0.7 195 303 86 198 60 198 0.65 # 12381 # 13010 # -1 # ID=2_18;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.313 1_81 - 164 AAA_21 PF13304.1 303 2e-06 21.3 0.1 1 1 3.2e-08 2.3e-06 21.2 0.1 235 285 47 94 25 125 0.92 # 62481 # 62972 # 1 # ID=1_81;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.585 1_40 - 876 MobB PF03205.9 140 0.00037 13.6 0.2 1 1 8.1e-05 0.0039 10.3 0.0 4 37 483 515 481 523 0.79 # 33013 # 35640 # -1 # ID=1_40;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.544 2_2 - 249 MobB PF03205.9 140 0.00067 12.8 0.0 1 1 3.1e-05 0.0015 11.7 0.0 3 34 101 132 99 141 0.92 # 461 # 1207 # 1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.487 1_21 - 784 MobB PF03205.9 140 0.0017 11.5 0.0 1 1 8.5e-05 0.0041 10.3 0.0 7 34 192 219 188 225 0.89 # 16414 # 18765 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.524 2_2 - 249 PhoH PF02562.11 205 1.1e-05 18.2 0.1 1 2 2.7e-07 4e-05 16.3 0.0 19 47 98 126 87 136 0.86 # 461 # 1207 # 1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.487 2_2 - 249 PhoH PF02562.11 205 1.1e-05 18.2 0.1 2 2 0.064 9.3 -1.2 0.0 138 177 152 190 143 199 0.69 # 461 # 1207 # 1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.487 2_2 - 249 T2SE PF00437.15 272 4.1e-06 19.2 0.0 1 1 4.3e-08 6.3e-06 18.6 0.0 99 148 67 118 29 126 0.81 # 461 # 1207 # 1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.487 3_4 - 147 Ribosomal_L27 PF01016.14 81 0.00014 15.1 0.0 1 1 2.2e-06 0.00032 13.9 0.0 18 50 33 65 27 72 0.91 # 1503 # 1943 # -1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.515 2_2 - 249 AAA_26 PF13500.1 199 0.00067 12.7 0.0 1 1 6.6e-06 0.00095 12.2 0.0 5 60 103 160 99 200 0.71 # 461 # 1207 # 1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.487 1_87 - 86 Cytidylate_kin2 PF13189.1 179 0.00048 13.5 0.5 1 1 4.2e-06 0.00061 13.2 0.5 112 154 40 82 29 84 0.84 # 67707 # 67964 # -1 # ID=1_87;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 1_44 - 107 Zeta_toxin PF06414.7 201 0.00041 12.9 0.1 1 1 4.4e-06 0.00064 12.3 0.1 14 39 70 95 60 101 0.82 # 36668 # 36988 # -1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.405 2_18 - 210 SMC_N PF02463.14 220 6.8e-10 31.9 3.7 1 2 1.8e-05 0.0025 10.4 0.2 16 44 19 47 9 55 0.80 # 12381 # 13010 # -1 # ID=2_18;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.313 2_18 - 210 SMC_N PF02463.14 220 6.8e-10 31.9 3.7 2 2 2.6e-09 3.7e-07 23.0 0.4 117 210 115 205 57 209 0.71 # 12381 # 13010 # -1 # ID=2_18;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.313 4_4 - 215 VirC1 PF07015.6 231 0.00059 12.4 0.0 1 2 0.00073 0.11 5.0 0.0 3 29 3 29 1 36 0.81 # 735 # 1379 # -1 # ID=4_4;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.429 4_4 - 215 VirC1 PF07015.6 231 0.00059 12.4 0.0 2 2 0.00052 0.075 5.5 0.0 87 190 77 181 59 194 0.70 # 735 # 1379 # -1 # ID=4_4;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.429 2_18 - 210 Arch_ATPase PF01637.13 234 7.5e-05 15.9 1.0 1 1 9.9e-07 0.00014 15.0 1.0 18 71 25 85 19 192 0.56 # 12381 # 13010 # -1 # ID=2_18;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.313 2_18 - 210 AAA_16 PF13191.1 185 5.9e-06 19.8 0.2 1 1 4.4e-07 2.1e-05 18.0 0.2 20 163 23 198 14 208 0.55 # 12381 # 13010 # -1 # ID=2_18;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.313 1_21 - 784 AAA_16 PF13191.1 185 6.6e-06 19.6 0.0 1 1 6.5e-07 3.2e-05 17.4 0.0 21 60 182 222 179 263 0.81 # 16414 # 18765 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.524 2_2 - 249 AAA_16 PF13191.1 185 7.7e-06 19.4 0.3 1 1 5.5e-07 2.6e-05 17.7 0.1 25 52 99 132 76 164 0.74 # 461 # 1207 # 1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.487 2_18 - 210 AAA_23 PF13476.1 202 5.6e-05 16.9 7.3 1 1 7.7e-07 0.00011 16.0 7.3 10 50 17 58 11 201 0.60 # 12381 # 13010 # -1 # ID=2_18;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.313 2_18 - 210 AAA_18 PF13238.1 129 2e-06 21.6 0.6 1 1 1.9e-06 0.00014 15.6 0.6 2 68 31 109 31 206 0.62 # 12381 # 13010 # -1 # ID=2_18;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.313 2_2 - 249 AAA_18 PF13238.1 129 0.00018 15.3 0.1 1 1 5.9e-06 0.00043 14.0 0.0 1 45 101 147 101 205 0.72 # 461 # 1207 # 1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.487 2_16 - 483 AAA_13 PF13166.1 712 0.001 11.0 1.6 1 1 5.6e-06 0.00081 11.3 0.3 362 438 6 82 1 90 0.91 # 9320 # 10768 # 1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.583 4_4 - 215 CbiA PF01656.18 195 1.8e-09 30.7 0.1 1 1 3.6e-11 2.6e-09 30.2 0.1 1 145 4 124 4 173 0.79 # 735 # 1379 # -1 # ID=4_4;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.429 2_2 - 249 CbiA PF01656.18 195 0.00011 15.1 0.1 1 1 2.9e-06 0.00021 14.2 0.1 5 30 104 129 101 136 0.91 # 461 # 1207 # 1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.487 1_66 - 188 Methyltransf_25 PF13649.1 101 0.0002 15.2 0.0 1 1 2.1e-06 0.0003 14.6 0.0 1 101 54 142 54 142 0.81 # 51541 # 52104 # -1 # ID=1_66;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.583 2_2 - 249 KaiC PF06745.8 227 0.00015 14.3 0.0 1 1 1.9e-06 0.00028 13.5 0.0 17 53 96 131 79 167 0.83 # 461 # 1207 # 1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.487 2_2 - 249 AAA_14 PF13173.1 128 0.00016 15.0 0.0 1 1 1.8e-06 0.00027 14.3 0.0 3 72 99 170 97 240 0.74 # 461 # 1207 # 1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.487 2_18 - 210 SRPRB PF09439.5 181 0.00016 14.3 0.8 1 1 3.9e-06 0.00056 12.6 0.8 7 129 31 148 25 190 0.82 # 12381 # 13010 # -1 # ID=2_18;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.313 2_18 - 210 AAA_29 PF13555.1 62 1.8e-05 17.7 0.1 1 1 5.2e-07 3.8e-05 16.6 0.1 13 40 18 44 12 50 0.84 # 12381 # 13010 # -1 # ID=2_18;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.313 2_2 - 249 AAA_29 PF13555.1 62 0.00015 14.7 0.2 1 1 9.4e-06 0.00069 12.6 0.1 22 37 98 112 88 118 0.80 # 461 # 1207 # 1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.487 2_2 - 249 AAA PF00004.24 132 5.7e-06 20.0 0.0 1 1 1.1e-07 8.1e-06 19.5 0.0 1 66 101 167 101 227 0.86 # 461 # 1207 # 1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.487 2_18 - 210 AAA PF00004.24 132 0.00017 15.2 1.7 1 1 6.5e-05 0.0047 10.6 1.7 2 119 31 201 30 208 0.53 # 12381 # 13010 # -1 # ID=2_18;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.313 2_2 - 249 Bac_DnaA PF00308.13 219 4.9e-07 23.0 0.0 1 1 5.2e-09 7.5e-07 22.4 0.0 37 136 101 198 83 204 0.88 # 461 # 1207 # 1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.487 2_2 - 249 Sigma54_activat PF00158.21 168 0.00016 14.6 0.0 1 1 1.9e-06 0.00028 13.8 0.0 20 52 96 128 82 185 0.82 # 461 # 1207 # 1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.487 2_18 - 210 DUF258 PF03193.11 161 1.5e-06 20.9 0.1 1 1 2e-08 2.9e-06 20.0 0.1 33 59 24 51 3 65 0.77 # 12381 # 13010 # -1 # ID=2_18;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.313 1_21 - 784 TraG-D_C PF12696.2 128 1.1e-20 67.2 0.0 1 1 1.5e-22 2.2e-20 66.3 0.0 1 127 419 541 419 542 0.86 # 16414 # 18765 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.524 1_44 - 107 KTI12 PF08433.5 270 0.0014 11.2 0.1 1 1 1.5e-05 0.0021 10.7 0.1 5 30 76 101 75 104 0.87 # 36668 # 36988 # -1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.405 1_66 - 188 Methyltransf_26 PF13659.1 117 1.6e-14 47.4 0.0 1 1 3.7e-16 2.7e-14 46.7 0.0 2 114 52 147 51 150 0.91 # 51541 # 52104 # -1 # ID=1_66;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.583 1_76 - 228 Methyltransf_26 PF13659.1 117 2.2e-12 40.5 0.1 1 2 7e-08 5.1e-06 20.0 0.0 54 114 4 71 2 74 0.73 # 57810 # 58493 # -1 # ID=1_76;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.572 1_76 - 228 Methyltransf_26 PF13659.1 117 2.2e-12 40.5 0.1 2 2 2e-07 1.5e-05 18.5 0.0 4 44 167 206 164 222 0.82 # 57810 # 58493 # -1 # ID=1_76;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.572 1_20 - 1757 AAA_30 PF13604.1 196 3e-43 141.1 15.0 1 2 5.8e-05 0.0084 9.1 4.2 7 147 420 552 416 562 0.81 # 11144 # 16414 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.599 1_20 - 1757 AAA_30 PF13604.1 196 3e-43 141.1 15.0 2 2 4.8e-44 6.9e-42 136.6 1.5 1 186 968 1156 968 1160 0.94 # 11144 # 16414 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.599 1_40 - 876 FtsK_SpoIIIE PF01580.13 205 1.6e-05 17.9 0.1 1 2 2e-06 0.00029 13.7 0.0 39 63 476 504 463 507 0.84 # 33013 # 35640 # -1 # ID=1_40;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.544 1_40 - 876 FtsK_SpoIIIE PF01580.13 205 1.6e-05 17.9 0.1 2 2 0.011 1.7 1.5 0.0 75 166 530 625 529 637 0.79 # 33013 # 35640 # -1 # ID=1_40;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.544 1_66 - 188 MTS PF05175.9 170 2.4e-09 30.2 0.0 1 1 2.3e-11 3.3e-09 29.8 0.0 31 141 50 149 41 165 0.85 # 51541 # 52104 # -1 # ID=1_66;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.583 1_66 - 188 Methyltrans_SAM PF10672.4 286 0.0011 11.2 0.0 1 1 1.1e-05 0.0016 10.7 0.0 196 261 113 173 100 180 0.78 # 51541 # 52104 # -1 # ID=1_66;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.583 1_66 - 188 Met_10 PF02475.11 200 0.0012 11.8 0.0 1 1 1.1e-05 0.0016 11.5 0.0 99 182 48 125 29 145 0.78 # 51541 # 52104 # -1 # ID=1_66;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.583 2_18 - 210 ABC_tran PF00005.22 137 5e-27 88.3 0.3 1 1 1.6e-28 1.2e-26 87.1 0.1 1 137 17 163 17 163 0.93 # 12381 # 13010 # -1 # ID=2_18;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.313 1_81 - 164 ABC_tran PF00005.22 137 1.1e-12 41.9 0.0 1 1 2.2e-14 1.6e-12 41.3 0.0 75 137 16 77 3 77 0.83 # 62481 # 62972 # 1 # ID=1_81;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.585 1_76 - 228 Cons_hypoth95 PF03602.10 183 1.5e-05 17.9 0.0 1 2 0.00031 0.045 6.6 0.0 113 146 19 54 5 82 0.66 # 57810 # 58493 # -1 # ID=1_76;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.572 1_76 - 228 Cons_hypoth95 PF03602.10 183 1.5e-05 17.9 0.0 2 2 3.9e-05 0.0057 9.5 0.0 41 62 162 183 145 219 0.78 # 57810 # 58493 # -1 # ID=1_76;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.572 1_20 - 1757 AAA_19 PF13245.1 76 1.7e-07 24.4 0.5 1 1 2.2e-08 8.1e-07 22.2 0.5 7 76 981 1047 974 1047 0.74 # 11144 # 16414 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.599 2_2 - 249 AAA_19 PF13245.1 76 0.00023 14.4 0.0 1 1 1.4e-05 0.00051 13.2 0.0 8 33 98 120 84 137 0.78 # 461 # 1207 # 1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.487 1_44 - 107 AAA_19 PF13245.1 76 0.00056 13.1 0.0 1 1 2.4e-05 0.00086 12.5 0.0 13 37 75 99 66 106 0.78 # 36668 # 36988 # -1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.405 2_18 - 210 AAA_19 PF13245.1 76 0.0013 12.0 0.0 1 1 0.00011 0.0039 10.4 0.0 10 32 27 48 20 53 0.83 # 12381 # 13010 # -1 # ID=2_18;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.313 1_40 - 876 AAA_10 PF12846.2 304 2.6e-49 161.7 0.0 1 1 1.5e-50 4.4e-49 160.9 0.0 1 294 479 768 479 774 0.89 # 33013 # 35640 # -1 # ID=1_40;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.544 1_21 - 784 AAA_10 PF12846.2 304 2.4e-10 33.7 0.0 1 1 1.4e-10 4.1e-09 29.6 0.0 3 296 187 494 186 500 0.68 # 16414 # 18765 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.524 2_18 - 210 AAA_10 PF12846.2 304 6.5e-05 15.9 1.9 1 2 0.00028 0.0082 9.0 0.3 5 22 31 48 28 58 0.87 # 12381 # 13010 # -1 # ID=2_18;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.313 2_18 - 210 AAA_10 PF12846.2 304 6.5e-05 15.9 1.9 2 2 0.0013 0.039 6.7 0.1 151 277 67 205 51 209 0.79 # 12381 # 13010 # -1 # ID=2_18;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.313 2_2 - 249 AAA_10 PF12846.2 304 0.00012 15.0 0.1 1 1 7.8e-06 0.00023 14.1 0.1 2 33 99 130 98 132 0.92 # 461 # 1207 # 1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.487 1_44 - 107 AAA_10 PF12846.2 304 0.00094 12.1 0.3 1 2 0.0054 0.16 4.8 0.0 272 289 20 41 6 54 0.79 # 36668 # 36988 # -1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.405 1_44 - 107 AAA_10 PF12846.2 304 0.00094 12.1 0.3 2 2 0.0026 0.074 5.8 0.1 2 29 73 100 72 103 0.89 # 36668 # 36988 # -1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.405 1_81 - 164 SbcCD_C PF13558.1 90 0.00018 14.9 0.1 1 1 3.2e-05 0.0023 11.3 0.0 31 89 47 92 30 93 0.74 # 62481 # 62972 # 1 # ID=1_81;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.585 2_18 - 210 SbcCD_C PF13558.1 90 0.00044 13.6 0.0 1 1 3.9e-05 0.0028 11.0 0.0 27 89 129 178 123 179 0.83 # 12381 # 13010 # -1 # ID=2_18;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.313 2_2 - 249 ResIII PF04851.10 184 3.7e-05 17.0 0.0 1 1 3.6e-07 5.2e-05 16.5 0.0 18 47 88 120 50 143 0.79 # 461 # 1207 # 1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.487 1_66 - 188 Methyltransf_31 PF13847.1 152 7.3e-07 22.3 0.0 1 1 6.3e-09 9.2e-07 22.0 0.0 5 119 52 162 48 183 0.82 # 51541 # 52104 # -1 # ID=1_66;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.583 1_20 - 1757 Viral_helicase1 PF01443.13 234 0.00088 12.2 0.0 1 2 0.00026 0.037 6.9 0.0 1 23 988 1012 988 1195 0.72 # 11144 # 16414 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.599 1_20 - 1757 Viral_helicase1 PF01443.13 234 0.00088 12.2 0.0 2 2 0.0061 0.89 2.4 0.0 171 234 1387 1447 1335 1447 0.63 # 11144 # 16414 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.599 2_2 - 249 DUF2075 PF09848.4 352 0.0013 11.1 0.0 1 1 1.3e-05 0.0019 10.6 0.0 1 50 98 144 98 160 0.81 # 461 # 1207 # 1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.487 2_2 - 249 DEAD PF00270.24 169 9e-05 15.4 0.0 1 1 8.6e-07 0.00013 15.0 0.0 14 62 98 143 84 197 0.87 # 461 # 1207 # 1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.487 1_21 - 784 TrwB_AAD_bind PF10412.4 386 4.4e-150 492.9 0.0 1 1 1.1e-151 5.4e-150 492.6 0.0 2 386 172 561 171 561 0.99 # 16414 # 18765 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.524 1_40 - 876 TrwB_AAD_bind PF10412.4 386 5.9e-07 21.8 0.1 1 2 7.2e-08 3.5e-06 19.2 0.0 15 53 479 517 470 547 0.80 # 33013 # 35640 # -1 # ID=1_40;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.544 1_40 - 876 TrwB_AAD_bind PF10412.4 386 5.9e-07 21.8 0.1 2 2 0.061 3 -0.3 0.0 261 317 713 769 685 772 0.92 # 33013 # 35640 # -1 # ID=1_40;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.544 2_2 - 249 TrwB_AAD_bind PF10412.4 386 0.00092 11.3 0.0 1 1 2.7e-05 0.0013 10.7 0.0 14 43 97 126 84 144 0.84 # 461 # 1207 # 1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.487 1_20 - 1757 AAA_11 PF13086.1 236 0.00027 14.0 0.0 1 1 1.8e-06 0.00027 14.0 0.0 2 75 969 1039 968 1059 0.81 # 11144 # 16414 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.599 2_2 - 249 Sigma54_activ_2 PF14532.1 138 1.8e-05 18.2 0.0 1 1 2.9e-07 4.3e-05 17.0 0.0 20 111 97 202 85 229 0.65 # 461 # 1207 # 1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.487 1_21 - 784 T4SS-DNA_transf PF02534.9 469 7.6e-10 31.3 0.0 1 1 2.3e-11 1.7e-09 30.1 0.0 250 361 362 476 198 500 0.76 # 16414 # 18765 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.524 1_40 - 876 T4SS-DNA_transf PF02534.9 469 4.3e-05 15.6 0.0 1 2 0.00044 0.032 6.2 0.0 105 185 533 607 470 623 0.86 # 33013 # 35640 # -1 # ID=1_40;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.544 1_40 - 876 T4SS-DNA_transf PF02534.9 469 4.3e-05 15.6 0.0 2 2 0.00022 0.016 7.2 0.0 319 378 711 769 663 771 0.90 # 33013 # 35640 # -1 # ID=1_40;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.544 1_66 - 188 TIGR00755 TIGR00755 256 1.1e-08 27.7 0.0 1 1 1e-10 1.5e-08 27.3 0.0 8 104 29 122 25 133 0.90 # 51541 # 52104 # -1 # ID=1_66;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.583 1_76 - 228 MethyltransfD12 PF02086.10 260 0.00082 12.3 0.0 1 2 0.022 3.2 0.5 0.0 178 188 21 31 14 89 0.83 # 57810 # 58493 # -1 # ID=1_76;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.572 1_76 - 228 MethyltransfD12 PF02086.10 260 0.00082 12.3 0.0 2 2 4e-05 0.0058 9.5 0.0 20 46 163 189 148 197 0.78 # 57810 # 58493 # -1 # ID=1_76;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.572 1_40 - 876 Pox_A32 PF04665.7 241 0.0012 11.5 0.0 1 1 2.3e-05 0.0033 10.1 0.0 7 38 473 504 469 519 0.85 # 33013 # 35640 # -1 # ID=1_40;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.544 2_2 - 249 NACHT PF05729.7 166 0.00053 13.1 1.2 1 1 1e-05 0.0015 11.6 0.7 3 24 101 122 99 190 0.90 # 461 # 1207 # 1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.487 2_2 - 249 AAA_25 PF13481.1 194 1.9e-07 24.1 0.1 1 1 5.7e-09 4.1e-07 23.0 0.1 28 63 93 129 83 197 0.72 # 461 # 1207 # 1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.487 2_18 - 210 AAA_25 PF13481.1 194 0.00036 13.4 0.0 1 1 1.1e-05 0.00083 12.2 0.0 30 50 24 44 6 49 0.82 # 12381 # 13010 # -1 # ID=2_18;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.313 1_76 - 228 Methyltransf_15 PF09445.5 164 0.00041 13.3 0.0 1 2 0.012 1.8 1.5 0.0 53 79 4 29 2 33 0.91 # 57810 # 58493 # -1 # ID=1_76;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.572 1_76 - 228 Methyltransf_15 PF09445.5 164 0.00041 13.3 0.0 2 2 4.3e-05 0.0063 9.5 0.0 3 31 166 194 164 208 0.86 # 57810 # 58493 # -1 # ID=1_76;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.572 2_2 - 249 AAA_28 PF13521.1 163 0.00014 15.3 0.0 1 1 1.6e-06 0.00024 14.5 0.0 2 27 101 130 100 167 0.82 # 461 # 1207 # 1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.487 2_2 - 249 AAA_5 PF07728.9 139 0.0011 12.1 0.5 1 1 2.1e-05 0.0031 10.7 0.1 1 34 100 136 100 167 0.81 # 461 # 1207 # 1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.487 2_2 - 249 APS_kinase PF01583.15 157 5.8e-05 16.2 0.0 1 1 1.3e-06 0.00019 14.6 0.0 5 35 101 131 98 139 0.92 # 461 # 1207 # 1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.487 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/3bbc0abe-9b13-49e2-9c00-d205b769f147 # Target file: checkm_output/bins/pm747/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm747/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/3bbc0abe-9b13-49e2-9c00-d205b769f147 checkm_output/bins/pm747/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 17:09:17 2020 # [ok]