# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_41 - 354 Mg_chelatase PF01078.16 207 0.00018 12.7 0.0 1 1 5.3e-06 0.00028 12.1 0.0 24 60 179 215 169 257 0.75 # 26688 # 27749 # -1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.390 1_12 - 271 IstB_IS21 PF01695.12 178 3.7e-06 18.4 0.0 1 1 1.2e-07 6.3e-06 17.7 0.0 41 69 19 47 5 56 0.89 # 7452 # 8264 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.392 1_41 - 354 AAA_22 PF13401.1 131 8.2e-05 14.8 0.0 1 1 3.2e-06 0.00017 13.7 0.0 8 46 181 213 177 244 0.84 # 26688 # 27749 # -1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.390 1_41 - 354 ATP_bind_1 PF03029.12 238 4.6e-05 15.0 0.0 1 1 1.4e-06 7.2e-05 14.3 0.0 2 25 183 206 182 211 0.86 # 26688 # 27749 # -1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.390 1_41 - 354 SRP54 PF00448.17 196 0.00028 12.3 0.0 1 1 8.6e-06 0.00045 11.7 0.0 4 30 180 206 177 213 0.84 # 26688 # 27749 # -1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.390 1_41 - 354 AAA_17 PF13207.1 121 1.6e-05 17.7 0.0 1 1 1.2e-06 3.1e-05 16.8 0.0 4 32 182 212 180 265 0.76 # 26688 # 27749 # -1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.390 1_12 - 271 AAA_17 PF13207.1 121 0.00036 13.4 0.0 1 1 3e-05 0.00077 12.3 0.0 2 28 28 55 27 146 0.60 # 7452 # 8264 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.392 1_41 - 354 AAA_21 PF13304.1 303 2.4e-06 19.7 0.0 1 1 1.3e-07 6.9e-06 18.1 0.0 3 32 181 209 180 243 0.71 # 26688 # 27749 # -1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.390 1_41 - 354 MobB PF03205.9 140 4.4e-05 15.2 0.0 1 1 1.5e-06 7.8e-05 14.4 0.0 5 39 182 215 179 221 0.83 # 26688 # 27749 # -1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.390 1_41 - 354 T2SE PF00437.15 272 5.4e-56 181.4 0.0 1 1 2.6e-57 6.8e-56 181.0 0.0 5 265 20 323 16 328 0.93 # 26688 # 27749 # -1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.390 1_46 - 841 T2SE PF00437.15 272 0.00028 11.8 0.0 1 1 2e-05 0.00053 10.9 0.0 114 154 388 453 330 461 0.65 # 31534 # 34056 # -1 # ID=1_46;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.413 1_41 - 354 Zeta_toxin PF06414.7 201 8.5e-05 13.7 0.0 1 1 2.6e-06 0.00013 13.0 0.0 14 49 175 211 164 222 0.85 # 26688 # 27749 # -1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.390 1_41 - 354 AAA_23 PF13476.1 202 0.0001 14.7 0.8 1 1 4.2e-06 0.00022 13.5 0.7 23 40 181 198 154 201 0.88 # 26688 # 27749 # -1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.390 1_12 - 271 AAA_18 PF13238.1 129 0.0001 14.6 0.0 1 2 9.8e-06 0.00051 12.4 0.0 2 93 29 125 28 144 0.62 # 7452 # 8264 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.392 1_12 - 271 AAA_18 PF13238.1 129 0.0001 14.6 0.0 2 2 0.075 3.9 -0.2 0.0 70 91 206 227 160 264 0.75 # 7452 # 8264 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.392 1_12 - 271 CbiA PF01656.18 195 9.2e-07 20.4 0.0 1 1 2.6e-08 1.3e-06 19.9 0.0 2 116 28 126 27 178 0.82 # 7452 # 8264 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.392 1_41 - 354 AAA_14 PF13173.1 128 9.3e-05 14.3 0.0 1 1 6.3e-06 0.00016 13.5 0.0 6 47 181 220 177 276 0.73 # 26688 # 27749 # -1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.390 1_12 - 271 AAA_14 PF13173.1 128 0.00021 13.2 0.3 1 1 1.9e-05 0.00049 12.0 0.0 4 85 27 102 24 130 0.56 # 7452 # 8264 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.392 1_41 - 354 AAA_29 PF13555.1 62 8.9e-07 20.4 0.0 1 1 6.4e-08 3.3e-06 18.6 0.0 17 51 174 205 167 210 0.76 # 26688 # 27749 # -1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.390 1_41 - 354 AAA PF00004.24 132 0.00049 12.3 0.0 1 1 1.5e-05 0.00078 11.6 0.0 3 33 182 214 180 259 0.66 # 26688 # 27749 # -1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.390 1_12 - 271 Sigma54_activat PF00158.21 168 1.8e-05 16.2 0.0 1 1 6.1e-07 3.2e-05 15.4 0.0 7 44 10 47 5 78 0.81 # 7452 # 8264 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.392 1_40 - 674 TraG-D_C PF12696.2 128 9.7e-30 95.1 0.1 1 1 3.3e-31 1.7e-29 94.3 0.1 2 126 468 589 467 591 0.88 # 24645 # 26666 # -1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.396 1_41 - 354 AAA_33 PF13671.1 143 2.1e-05 16.4 0.0 1 1 6.9e-07 3.6e-05 15.7 0.0 3 21 181 199 180 268 0.82 # 26688 # 27749 # -1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.390 1_41 - 354 AAA_30 PF13604.1 196 8.5e-05 14.2 0.0 1 1 2.7e-06 0.00014 13.4 0.0 21 46 180 205 170 214 0.84 # 26688 # 27749 # -1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.390 1_41 - 354 FtsK_SpoIIIE PF01580.13 205 4.7e-05 14.9 0.0 1 1 2.2e-06 0.00011 13.6 0.0 37 58 175 197 149 199 0.77 # 26688 # 27749 # -1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.390 1_41 - 354 ABC_tran PF00005.22 137 1.6e-06 20.5 0.0 1 1 7e-08 3.7e-06 19.3 0.0 14 58 180 222 171 295 0.82 # 26688 # 27749 # -1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.390 1_41 - 354 AAA_19 PF13245.1 76 0.00031 12.5 0.0 1 1 1.1e-05 0.00058 11.6 0.0 10 36 179 202 173 218 0.82 # 26688 # 27749 # -1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.390 1_46 - 841 AAA_10 PF12846.2 304 1e-23 76.2 0.0 1 1 5.5e-25 1.4e-23 75.7 0.0 1 291 427 727 427 734 0.82 # 31534 # 34056 # -1 # ID=1_46;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.413 1_41 - 354 AAA_10 PF12846.2 304 1.8e-05 16.2 0.0 1 1 1.3e-06 3.5e-05 15.3 0.0 4 36 180 212 178 215 0.88 # 26688 # 27749 # -1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.390 1_41 - 354 PduV-EutP PF10662.4 143 0.00024 12.6 0.0 1 2 0.024 1.2 0.6 0.0 106 135 6 35 1 37 0.83 # 26688 # 27749 # -1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.390 1_41 - 354 PduV-EutP PF10662.4 143 0.00024 12.6 0.0 2 2 4.9e-05 0.0025 9.3 0.0 5 23 181 199 178 221 0.83 # 26688 # 27749 # -1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.390 1_22 - 68 UBX PF00789.15 82 0.00023 13.2 0.1 1 1 5.2e-06 0.00027 13.0 0.1 21 63 11 53 8 62 0.90 # 15085 # 15288 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.382 1_40 - 674 TrwB_AAD_bind PF10412.4 386 1.1e-18 58.9 0.1 1 2 0.00012 0.003 8.1 0.0 75 131 248 308 242 321 0.75 # 24645 # 26666 # -1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.396 1_40 - 674 TrwB_AAD_bind PF10412.4 386 1.1e-18 58.9 0.1 2 2 5.4e-17 1.4e-15 48.7 0.0 167 374 385 598 377 610 0.77 # 24645 # 26666 # -1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.396 1_41 - 354 TrwB_AAD_bind PF10412.4 386 0.00039 11.0 0.0 1 1 2.5e-05 0.00066 10.3 0.0 17 48 179 210 170 214 0.77 # 26688 # 27749 # -1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.390 1_40 - 674 T4SS-DNA_transf PF02534.9 469 5.6e-96 313.8 1.4 1 2 9.2e-29 4.8e-27 86.5 0.0 4 103 109 207 106 220 0.94 # 24645 # 26666 # -1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.396 1_40 - 674 T4SS-DNA_transf PF02534.9 469 5.6e-96 313.8 1.4 2 2 7.1e-71 3.7e-69 225.4 1.2 104 459 242 641 232 649 0.87 # 24645 # 26666 # -1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.396 1_41 - 354 Pox_A32 PF04665.7 241 1.3e-05 16.5 0.0 1 1 4e-07 2.1e-05 15.9 0.0 4 45 169 209 166 241 0.71 # 26688 # 27749 # -1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.390 1_12 - 271 RNA_helicase PF00910.17 107 0.00028 13.1 0.1 1 1 1.4e-05 0.00071 11.8 0.1 1 26 28 53 28 123 0.70 # 7452 # 8264 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.392 1_41 - 354 NACHT PF05729.7 166 6.8e-05 14.5 0.0 1 1 3e-06 0.00016 13.4 0.0 4 23 181 200 179 207 0.88 # 26688 # 27749 # -1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.390 1_41 - 354 AAA_28 PF13521.1 163 0.0004 12.3 0.0 1 1 1.5e-05 0.00079 11.4 0.0 3 23 181 204 179 220 0.75 # 26688 # 27749 # -1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.390 1_41 - 354 AAA_5 PF07728.9 139 5.1e-05 15.0 0.0 1 1 2e-06 0.0001 14.0 0.0 3 33 181 211 179 224 0.86 # 26688 # 27749 # -1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.390 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/b133545e-3de0-45e8-90be-9fb64f4e4dc6 # Target file: checkm_output/bins/pm746/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm746/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/b133545e-3de0-45e8-90be-9fb64f4e4dc6 checkm_output/bins/pm746/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 17:09:15 2020 # [ok]