# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_1 - 215 MipZ PF09140.6 261 2e-08 26.2 2.2 1 2 0.00089 0.076 4.7 0.5 7 24 8 25 2 37 0.71 # 241 # 885 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.428 1_1 - 215 MipZ PF09140.6 261 2e-08 26.2 2.2 2 2 9.1e-09 7.8e-07 21.0 0.0 70 133 45 108 25 125 0.84 # 241 # 885 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.428 2_10 - 1232 UvrD_C_2 PF13538.1 104 1.9e-08 27.1 0.8 1 2 0.0082 0.69 2.8 0.0 6 44 773 811 769 841 0.73 # 6904 # 10599 # 1 # ID=2_10;partial=00;start_type=ATG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.606 2_10 - 1232 UvrD_C_2 PF13538.1 104 1.9e-08 27.1 0.8 2 2 9e-09 7.6e-07 22.0 0.2 3 102 887 990 885 992 0.79 # 6904 # 10599 # 1 # ID=2_10;partial=00;start_type=ATG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.606 3_5 - 210 AAA_22 PF13401.1 131 1.8e-06 20.8 0.3 1 1 8.7e-08 7.4e-06 18.8 0.3 3 123 26 191 23 198 0.72 # 5263 # 5892 # -1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.319 3_5 - 210 AAA_15 PF13175.1 415 1.7e-09 29.8 9.2 1 2 3.4e-07 2.9e-05 15.9 7.8 6 90 11 95 6 136 0.70 # 5263 # 5892 # -1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.319 3_5 - 210 AAA_15 PF13175.1 415 1.7e-09 29.8 9.2 2 2 1.9e-06 0.00016 13.4 0.0 366 414 152 196 143 197 0.86 # 5263 # 5892 # -1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.319 3_5 - 210 AAA_17 PF13207.1 121 0.00025 14.6 0.6 1 1 8.5e-06 0.00072 13.1 0.5 3 18 31 46 31 50 0.89 # 5263 # 5892 # -1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.319 3_5 - 210 AAA_21 PF13304.1 303 5.4e-19 61.9 6.0 1 2 1.9e-08 1.6e-06 20.9 3.5 1 62 29 88 29 109 0.69 # 5263 # 5892 # -1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.319 3_5 - 210 AAA_21 PF13304.1 303 5.4e-19 61.9 6.0 2 2 4.5e-15 3.9e-13 42.6 1.0 183 303 74 198 57 198 0.65 # 5263 # 5892 # -1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.319 2_10 - 1232 PhoH PF02562.11 205 6.3e-05 14.9 0.1 1 1 3e-06 0.00025 12.9 0.1 3 61 513 575 511 589 0.85 # 6904 # 10599 # 1 # ID=2_10;partial=00;start_type=ATG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.606 3_5 - 210 SMC_N PF02463.14 220 5.1e-10 31.6 3.6 1 2 1.8e-05 0.0015 10.4 0.2 16 44 19 47 9 54 0.80 # 5263 # 5892 # -1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.319 3_5 - 210 SMC_N PF02463.14 220 5.1e-10 31.6 3.6 2 2 3.4e-09 2.9e-07 22.6 0.3 123 210 121 205 60 209 0.70 # 5263 # 5892 # -1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.319 1_1 - 215 VirC1 PF07015.6 231 0.00036 12.3 0.0 1 2 0.00076 0.065 4.9 0.0 3 29 3 29 1 36 0.81 # 241 # 885 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.428 1_1 - 215 VirC1 PF07015.6 231 0.00036 12.3 0.0 2 2 0.00052 0.044 5.5 0.0 87 190 77 181 59 194 0.70 # 241 # 885 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.428 3_5 - 210 Arch_ATPase PF01637.13 234 3.8e-05 16.1 0.9 1 1 8.5e-07 7.2e-05 15.2 0.9 18 71 25 85 19 191 0.57 # 5263 # 5892 # -1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.319 3_5 - 210 AAA_16 PF13191.1 185 3.2e-06 19.9 0.1 1 1 1.3e-07 1.1e-05 18.1 0.1 20 163 23 198 14 208 0.53 # 5263 # 5892 # -1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.319 3_5 - 210 AAA_23 PF13476.1 202 2.7e-05 17.2 7.7 1 1 5.6e-07 4.7e-05 16.4 7.7 10 78 17 79 11 201 0.56 # 5263 # 5892 # -1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.319 3_5 - 210 AAA_18 PF13238.1 129 1.1e-06 21.7 0.5 1 1 7.7e-07 6.6e-05 15.9 0.5 2 68 31 109 31 206 0.55 # 5263 # 5892 # -1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.319 1_1 - 215 CbiA PF01656.18 195 3.5e-10 32.3 0.1 1 1 5.8e-12 4.9e-10 31.8 0.1 1 145 4 124 4 173 0.79 # 241 # 885 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.428 3_5 - 210 SRPRB PF09439.5 181 0.00041 12.3 0.9 1 1 2.9e-05 0.0025 9.7 0.7 7 129 31 148 25 156 0.72 # 5263 # 5892 # -1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.319 3_5 - 210 AAA_29 PF13555.1 62 9e-06 17.9 0.1 1 1 2.6e-07 2.2e-05 16.6 0.1 13 40 18 44 12 50 0.84 # 5263 # 5892 # -1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.319 3_5 - 210 AAA PF00004.24 132 0.00013 14.9 1.9 1 1 3.7e-05 0.0031 10.4 1.9 2 119 31 201 30 208 0.53 # 5263 # 5892 # -1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.319 3_5 - 210 MMR_HSR1 PF01926.18 116 0.00042 13.0 1.0 1 1 1.2e-05 0.001 11.7 1.0 3 39 31 67 30 202 0.76 # 5263 # 5892 # -1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.319 3_5 - 210 DUF258 PF03193.11 161 9.1e-07 20.9 0.0 1 1 2e-08 1.7e-06 20.0 0.0 33 58 24 50 3 64 0.77 # 5263 # 5892 # -1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.319 2_10 - 1232 AAA_30 PF13604.1 196 1.4e-43 141.5 8.8 1 2 0.00012 0.01 8.1 0.7 42 147 2 98 1 108 0.78 # 6904 # 10599 # 1 # ID=2_10;partial=00;start_type=ATG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.606 2_10 - 1232 AAA_30 PF13604.1 196 1.4e-43 141.5 8.8 2 2 5.6e-44 4.8e-42 136.4 1.9 1 186 514 702 514 706 0.94 # 6904 # 10599 # 1 # ID=2_10;partial=00;start_type=ATG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.606 3_5 - 210 ABC_tran PF00005.22 137 2.4e-27 88.6 0.2 1 1 7.2e-29 6.1e-27 87.3 0.0 1 137 17 163 17 163 0.93 # 5263 # 5892 # -1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.319 2_10 - 1232 AAA_19 PF13245.1 76 5.2e-08 25.3 0.4 1 1 5.3e-09 2.2e-07 23.3 0.4 6 76 528 593 521 593 0.75 # 6904 # 10599 # 1 # ID=2_10;partial=00;start_type=ATG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.606 3_5 - 210 AAA_19 PF13245.1 76 0.00091 11.7 0.0 1 1 5.5e-05 0.0023 10.4 0.0 10 32 27 48 20 52 0.83 # 5263 # 5892 # -1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.319 3_5 - 210 AAA_10 PF12846.2 304 2.8e-05 16.3 2.4 1 2 6.2e-05 0.0052 8.8 0.3 5 21 31 47 28 54 0.87 # 5263 # 5892 # -1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.319 3_5 - 210 AAA_10 PF12846.2 304 2.8e-05 16.3 2.4 2 2 0.00015 0.013 7.5 0.1 150 277 66 205 53 209 0.81 # 5263 # 5892 # -1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.319 3_5 - 210 SbcCD_C PF13558.1 90 0.00027 13.6 0.0 1 1 1.9e-05 0.0016 11.1 0.0 27 89 129 178 121 179 0.83 # 5263 # 5892 # -1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.319 2_10 - 1232 Viral_helicase1 PF01443.13 234 0.00064 11.9 0.0 1 2 0.0002 0.017 7.3 0.0 1 23 534 558 534 714 0.76 # 6904 # 10599 # 1 # ID=2_10;partial=00;start_type=ATG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.606 2_10 - 1232 Viral_helicase1 PF01443.13 234 0.00064 11.9 0.0 2 2 0.0083 0.7 2.0 0.0 183 234 942 993 888 993 0.60 # 6904 # 10599 # 1 # ID=2_10;partial=00;start_type=ATG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.606 2_10 - 1232 AAA_11 PF13086.1 236 3e-05 16.3 0.0 1 1 1.4e-06 0.00012 14.4 0.0 2 75 515 585 514 606 0.81 # 6904 # 10599 # 1 # ID=2_10;partial=00;start_type=ATG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.606 3_5 - 210 AAA_25 PF13481.1 194 0.0002 13.5 0.0 1 1 5.1e-06 0.00043 12.4 0.0 30 50 24 44 6 61 0.85 # 5263 # 5892 # -1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.319 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/bbe003d8-e452-4a39-8db9-317538fa70b2 # Target file: checkm_output/bins/pm741/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm741/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/bbe003d8-e452-4a39-8db9-317538fa70b2 checkm_output/bins/pm741/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 17:09:15 2020 # [ok]