# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 2_16 - 535 cobW PF02492.14 178 5.2e-05 15.4 0.1 1 1 9e-06 0.00039 12.6 0.0 3 33 256 288 254 310 0.77 # 10468 # 12072 # -1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.393 1_19 - 215 cobW PF02492.14 178 0.00042 12.5 0.8 1 1 2.4e-05 0.0011 11.2 0.8 3 46 3 48 1 130 0.69 # 14803 # 15447 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.414 1_19 - 215 Thymidylate_kin PF02223.12 186 0.00039 12.5 0.3 1 2 2.2e-05 0.002 10.2 0.0 6 29 11 34 9 47 0.91 # 14803 # 15447 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.414 1_19 - 215 Thymidylate_kin PF02223.12 186 0.00039 12.5 0.3 2 2 0.03 2.6 0.0 0.0 115 165 128 186 108 210 0.52 # 14803 # 15447 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.414 2_16 - 535 Rad17 PF03215.10 519 4.9e-06 18.1 0.1 1 1 2.3e-07 1e-05 17.1 0.0 47 91 255 299 241 316 0.83 # 10468 # 12072 # -1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.393 2_14 - 332 Rad17 PF03215.10 519 0.00012 13.5 0.0 1 1 5.3e-06 0.00023 12.6 0.0 35 74 117 156 113 175 0.85 # 8424 # 9419 # -1 # ID=2_14;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.409 8_3 - 213 IstB_IS21 PF01695.12 178 3.8e-73 237.4 0.1 1 1 2e-74 4.4e-73 237.2 0.1 1 178 9 188 9 188 0.98 # 1528 # 2166 # -1 # ID=8_3;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.498 5_5 - 138 IstB_IS21 PF01695.12 178 5.5e-32 103.3 0.2 1 2 0.08 1.7 0.7 0.1 83 111 4 32 2 39 0.85 # 2947 # 3360 # -1 # ID=5_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.522 5_5 - 138 IstB_IS21 PF01695.12 178 5.5e-32 103.3 0.2 2 2 6.5e-33 1.4e-31 102.0 0.1 74 174 32 132 17 135 0.88 # 2947 # 3360 # -1 # ID=5_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.522 9_2 - 89 IstB_IS21 PF01695.12 178 3.7e-06 19.1 0.1 1 2 0.03 0.66 2.0 0.0 64 97 25 57 23 61 0.66 # 1073 # 1339 # 1 # ID=9_2;partial=01;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.524 9_2 - 89 IstB_IS21 PF01695.12 178 3.7e-06 19.1 0.1 2 2 1e-06 2.2e-05 16.6 0.1 1 33 56 88 56 89 0.92 # 1073 # 1339 # 1 # ID=9_2;partial=01;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.524 3_1 - 67 IstB_IS21 PF01695.12 178 3.9e-06 19.1 0.0 1 1 1.9e-07 4.1e-06 19.0 0.0 1 34 9 42 9 57 0.89 # 1 # 201 # 1 # ID=3_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.468 1_19 - 215 MipZ PF09140.6 261 1.6e-15 49.5 3.1 1 3 1.9e-11 1.6e-09 29.8 0.2 2 53 2 52 1 61 0.88 # 14803 # 15447 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.414 1_19 - 215 MipZ PF09140.6 261 1.6e-15 49.5 3.1 2 3 3.3e-08 2.9e-06 19.2 0.2 84 145 64 125 59 134 0.90 # 14803 # 15447 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.414 1_19 - 215 MipZ PF09140.6 261 1.6e-15 49.5 3.1 3 3 0.059 5.1 -1.3 0.0 219 254 182 207 172 210 0.56 # 14803 # 15447 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.414 1_19 - 215 YhjQ PF06564.7 244 0.00047 12.2 0.8 1 2 3.3e-05 0.0028 9.7 0.2 6 36 5 35 1 39 0.87 # 14803 # 15447 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.414 1_19 - 215 YhjQ PF06564.7 244 0.00047 12.2 0.8 2 2 0.015 1.3 0.9 0.0 99 160 62 124 49 131 0.63 # 14803 # 15447 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.414 2_16 - 535 DUF87 PF01935.12 229 7.5e-06 18.6 0.2 1 1 5.9e-07 2.6e-05 16.8 0.0 28 56 258 288 256 297 0.83 # 10468 # 12072 # -1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.393 2_14 - 332 DUF87 PF01935.12 229 0.00059 12.4 0.3 1 1 2.4e-05 0.001 11.6 0.3 27 48 131 152 129 162 0.82 # 8424 # 9419 # -1 # ID=2_14;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.409 2_16 - 535 AAA_22 PF13401.1 131 2.6e-07 23.6 0.0 1 1 3e-08 6.5e-07 22.3 0.0 5 85 254 329 249 372 0.77 # 10468 # 12072 # -1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.393 8_3 - 213 AAA_22 PF13401.1 131 1.1e-06 21.5 0.1 1 2 6.2e-05 0.0013 11.6 0.0 5 22 56 73 52 90 0.83 # 1528 # 2166 # -1 # ID=8_3;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.498 8_3 - 213 AAA_22 PF13401.1 131 1.1e-06 21.5 0.1 2 2 0.001 0.022 7.6 0.0 88 103 107 134 78 155 0.66 # 1528 # 2166 # -1 # ID=8_3;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.498 2_14 - 332 AAA_22 PF13401.1 131 0.00012 15.0 0.0 1 1 8.9e-06 0.00019 14.3 0.0 3 31 126 154 123 230 0.83 # 8424 # 9419 # -1 # ID=2_14;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.409 5_5 - 138 AAA_22 PF13401.1 131 0.00069 12.5 0.1 1 1 4.1e-05 0.00089 12.1 0.1 58 120 37 102 6 111 0.61 # 2947 # 3360 # -1 # ID=5_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.522 1_19 - 215 SRP54 PF00448.17 196 2.3e-11 36.2 0.3 1 1 5e-13 4.3e-11 35.3 0.3 6 98 4 93 1 98 0.79 # 14803 # 15447 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.414 1_24 - 874 AAA_15 PF13175.1 415 5.5e-06 18.3 0.9 1 2 1.8e-05 0.0016 10.2 0.1 17 43 282 312 259 339 0.81 # 17902 # 20523 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.532 1_24 - 874 AAA_15 PF13175.1 415 5.5e-06 18.3 0.9 2 2 0.00027 0.024 6.3 0.1 337 413 746 812 614 813 0.86 # 17902 # 20523 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.532 2_16 - 535 AAA_17 PF13207.1 121 2.7e-07 24.2 0.1 1 1 4e-08 1.2e-06 22.1 0.0 3 77 257 337 255 408 0.68 # 10468 # 12072 # -1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.393 2_14 - 332 AAA_17 PF13207.1 121 0.0002 14.9 0.1 1 1 1.9e-05 0.00056 13.5 0.0 2 33 130 166 129 238 0.69 # 8424 # 9419 # -1 # ID=2_14;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.409 1_19 - 215 AAA_17 PF13207.1 121 0.00034 14.2 0.1 1 1 1.6e-05 0.00046 13.8 0.1 9 76 11 85 2 183 0.69 # 14803 # 15447 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.414 1_24 - 874 AAA_21 PF13304.1 303 1.8e-10 33.9 1.7 1 2 0.00041 0.036 6.7 0.2 9 25 297 315 289 340 0.66 # 17902 # 20523 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.532 1_24 - 874 AAA_21 PF13304.1 303 1.8e-10 33.9 1.7 2 2 4.7e-10 4.1e-08 26.2 0.1 170 301 693 813 629 815 0.79 # 17902 # 20523 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.532 1_19 - 215 MobB PF03205.9 140 0.00013 14.4 0.2 1 1 6.1e-06 0.00026 13.4 0.2 5 39 4 39 1 88 0.70 # 14803 # 15447 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.414 2_16 - 535 MobB PF03205.9 140 0.00022 13.7 0.0 1 1 1.9e-05 0.00082 11.8 0.0 3 35 256 288 254 330 0.78 # 10468 # 12072 # -1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.393 1_19 - 215 ArsA_ATPase PF02374.10 305 9.9e-09 27.3 3.9 1 3 1.6e-08 1.4e-06 20.2 0.8 6 38 5 38 1 39 0.85 # 14803 # 15447 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.414 1_19 - 215 ArsA_ATPase PF02374.10 305 9.9e-09 27.3 3.9 2 3 0.0001 0.0089 7.7 0.0 96 135 46 87 35 89 0.83 # 14803 # 15447 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.414 1_19 - 215 ArsA_ATPase PF02374.10 305 9.9e-09 27.3 3.9 3 3 0.095 8.3 -2.0 0.0 73 108 133 167 111 187 0.54 # 14803 # 15447 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.414 8_3 - 213 PhoH PF02562.11 205 9.6e-08 24.2 0.0 1 1 3.1e-09 2.7e-07 22.7 0.0 11 47 47 83 36 92 0.80 # 1528 # 2166 # -1 # ID=8_3;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.498 8_3 - 213 AFG1_ATPase PF03969.11 362 3.9e-05 15.2 0.1 1 1 1.8e-06 0.00016 13.2 0.1 64 216 57 207 9 212 0.75 # 1528 # 2166 # -1 # ID=8_3;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.498 2_16 - 535 T2SE PF00437.15 272 8.7e-40 129.0 0.0 1 1 4.6e-41 2e-39 127.8 0.0 11 271 120 401 112 402 0.80 # 10468 # 12072 # -1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.393 2_14 - 332 T2SE PF00437.15 272 1.3e-30 98.9 0.0 1 1 4e-32 1.7e-30 98.5 0.0 94 259 97 266 53 279 0.77 # 8424 # 9419 # -1 # ID=2_14;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.409 1_19 - 215 SKI PF01202.17 158 0.00059 12.4 0.4 1 2 0.0009 0.078 5.5 0.2 2 16 11 25 10 31 0.89 # 14803 # 15447 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.414 1_19 - 215 SKI PF01202.17 158 0.00059 12.4 0.4 2 2 0.0013 0.12 5.0 0.0 87 150 31 95 24 109 0.72 # 14803 # 15447 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.414 1_19 - 215 Zeta_toxin PF06414.7 201 0.0001 14.1 0.0 1 1 2e-06 0.00017 13.4 0.0 20 109 4 94 1 103 0.79 # 14803 # 15447 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.414 1_24 - 874 SMC_N PF02463.14 220 2.7e-09 29.2 0.3 1 2 3.9e-08 3.4e-06 19.1 0.0 2 49 267 312 266 364 0.79 # 17902 # 20523 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.532 1_24 - 874 SMC_N PF02463.14 220 2.7e-09 29.2 0.3 2 2 8.2e-05 0.0071 8.2 0.1 146 201 757 813 387 832 0.81 # 17902 # 20523 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.532 1_19 - 215 VirC1 PF07015.6 231 1.9e-08 26.3 0.1 1 1 2.6e-10 2.3e-08 26.1 0.1 8 201 7 200 1 210 0.72 # 14803 # 15447 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.414 1_19 - 215 Fer4_NifH PF00142.13 273 7.2e-05 14.7 1.0 1 2 2.2e-06 0.00019 13.4 0.3 8 37 9 38 1 52 0.86 # 14803 # 15447 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.414 1_19 - 215 Fer4_NifH PF00142.13 273 7.2e-05 14.7 1.0 2 2 0.031 2.7 -0.3 0.0 189 210 67 88 42 149 0.59 # 14803 # 15447 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.414 2_16 - 535 Arch_ATPase PF01637.13 234 3.4e-05 16.3 0.0 1 1 1.5e-06 6.5e-05 15.4 0.0 22 73 255 314 246 375 0.82 # 10468 # 12072 # -1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.393 8_3 - 213 Arch_ATPase PF01637.13 234 0.00055 12.3 0.1 1 1 3.6e-05 0.0015 10.9 0.1 8 37 43 72 40 154 0.84 # 1528 # 2166 # -1 # ID=8_3;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.498 2_14 - 332 AAA_16 PF13191.1 185 1.9e-05 17.4 0.1 1 1 1.7e-06 4.9e-05 16.1 0.1 19 56 122 160 116 173 0.82 # 8424 # 9419 # -1 # ID=2_14;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.409 8_3 - 213 AAA_16 PF13191.1 185 5.9e-05 15.8 0.2 1 1 4e-06 0.00012 14.8 0.2 21 41 52 72 40 188 0.86 # 1528 # 2166 # -1 # ID=8_3;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.498 2_16 - 535 AAA_16 PF13191.1 185 0.00014 14.6 0.0 1 1 1.3e-05 0.00039 13.1 0.0 16 48 245 277 239 332 0.87 # 10468 # 12072 # -1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.393 1_24 - 874 AAA_23 PF13476.1 202 1.5e-09 31.2 13.8 1 1 1.8e-09 5.1e-08 26.1 13.8 2 198 270 574 269 655 0.48 # 17902 # 20523 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.532 2_16 - 535 AAA_23 PF13476.1 202 2.1e-07 24.2 0.0 1 1 1.5e-08 4.2e-07 23.1 0.0 20 50 254 284 235 431 0.79 # 10468 # 12072 # -1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.393 2_14 - 332 AAA_23 PF13476.1 202 4.7e-05 16.5 0.2 1 1 4.1e-06 0.00012 15.1 0.1 18 39 126 147 112 157 0.86 # 8424 # 9419 # -1 # ID=2_14;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.409 2_16 - 535 AAA_18 PF13238.1 129 5.4e-08 25.9 0.0 1 1 4.3e-09 1.9e-07 24.2 0.0 2 116 257 381 257 390 0.81 # 10468 # 12072 # -1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.393 1_19 - 215 AAA_18 PF13238.1 129 0.00039 13.5 0.2 1 1 1.9e-05 0.00085 12.4 0.1 8 42 11 45 9 135 0.74 # 14803 # 15447 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.414 1_19 - 215 CbiA PF01656.18 195 4.1e-18 58.2 0.0 1 1 6.5e-20 5.7e-18 57.7 0.0 2 148 4 138 3 182 0.72 # 14803 # 15447 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.414 2_14 - 332 AAA_14 PF13173.1 128 4.6e-07 22.5 0.0 1 1 4.1e-08 8.9e-07 21.6 0.0 2 86 127 229 126 253 0.71 # 8424 # 9419 # -1 # ID=2_14;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.409 8_3 - 213 AAA_14 PF13173.1 128 7.4e-07 21.9 0.0 1 1 5.2e-08 1.1e-06 21.3 0.0 2 96 55 156 54 179 0.68 # 1528 # 2166 # -1 # ID=8_3;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.498 2_16 - 535 AAA_14 PF13173.1 128 2.6e-06 20.1 0.1 1 1 4.6e-07 1e-05 18.2 0.0 4 46 255 299 253 338 0.80 # 10468 # 12072 # -1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.393 5_5 - 138 AAA_14 PF13173.1 128 0.00013 14.6 0.0 1 1 7.9e-06 0.00017 14.2 0.0 18 96 23 105 21 115 0.73 # 2947 # 3360 # -1 # ID=5_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.522 2_16 - 535 AAA_29 PF13555.1 62 9.3e-07 21.1 0.0 1 1 8.5e-08 1.9e-06 20.1 0.0 25 58 255 288 237 292 0.81 # 10468 # 12072 # -1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.393 2_14 - 332 AAA_29 PF13555.1 62 4.2e-06 19.0 0.2 1 1 4.1e-07 9e-06 17.9 0.2 23 45 128 149 118 155 0.83 # 8424 # 9419 # -1 # ID=2_14;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.409 1_24 - 874 AAA_29 PF13555.1 62 0.00021 13.5 0.1 1 1 2.1e-05 0.00046 12.4 0.1 13 47 279 311 276 320 0.81 # 17902 # 20523 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.532 8_3 - 213 AAA_29 PF13555.1 62 0.00049 12.4 0.0 1 1 4.2e-05 0.00091 11.5 0.0 19 59 51 92 42 94 0.72 # 1528 # 2166 # -1 # ID=8_3;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.498 8_3 - 213 AAA PF00004.24 132 1.1e-07 24.8 0.0 1 1 2e-09 1.8e-07 24.2 0.0 1 74 58 133 58 167 0.77 # 1528 # 2166 # -1 # ID=8_3;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.498 8_3 - 213 Bac_DnaA PF00308.13 219 6e-10 31.8 0.0 1 1 9.6e-12 8.4e-10 31.3 0.0 37 136 58 155 28 160 0.85 # 1528 # 2166 # -1 # ID=8_3;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.498 8_3 - 213 Sigma54_activat PF00158.21 168 7.2e-05 15.0 0.1 1 1 5.6e-06 0.00048 12.3 0.1 18 54 51 87 35 150 0.71 # 1528 # 2166 # -1 # ID=8_3;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.498 8_3 - 213 DUF258 PF03193.11 161 7.8e-06 17.9 0.0 1 1 1.2e-07 1.1e-05 17.4 0.0 21 78 41 110 23 147 0.72 # 1528 # 2166 # -1 # ID=8_3;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.498 1_19 - 215 AAA_31 PF13614.1 157 1.1e-09 31.2 0.2 1 2 1e-09 9.1e-08 24.9 0.1 2 42 2 42 1 70 0.86 # 14803 # 15447 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.414 1_19 - 215 AAA_31 PF13614.1 157 1.1e-09 31.2 0.2 2 2 0.0022 0.19 4.3 0.0 106 134 67 95 60 109 0.82 # 14803 # 15447 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.414 8_3 - 213 NTPase_1 PF03266.10 168 0.00012 14.5 0.2 1 2 0.0011 0.093 5.1 0.0 2 30 58 86 57 114 0.83 # 1528 # 2166 # -1 # ID=8_3;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.498 8_3 - 213 NTPase_1 PF03266.10 168 0.00012 14.5 0.2 2 2 0.00018 0.015 7.7 0.0 88 113 110 135 96 157 0.72 # 1528 # 2166 # -1 # ID=8_3;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.498 2_16 - 535 AAA_33 PF13671.1 143 0.00011 14.8 0.0 1 2 0.046 2 1.0 0.0 70 103 46 79 42 96 0.85 # 10468 # 12072 # -1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.393 2_16 - 535 AAA_33 PF13671.1 143 0.00011 14.8 0.0 2 2 3.8e-05 0.0017 11.0 0.0 3 22 257 276 255 333 0.90 # 10468 # 12072 # -1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.393 1_19 - 215 AAA_33 PF13671.1 143 0.00012 14.7 0.1 1 2 1.6e-05 0.00071 12.2 0.1 9 85 11 94 4 175 0.73 # 14803 # 15447 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.414 1_19 - 215 AAA_33 PF13671.1 143 0.00012 14.7 0.1 2 2 0.056 2.4 0.7 0.0 75 96 145 166 129 207 0.77 # 14803 # 15447 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.414 1_19 - 215 KTI12 PF08433.5 270 0.00013 13.9 0.1 1 2 3.3e-06 0.00029 12.8 0.0 11 49 11 49 1 64 0.86 # 14803 # 15447 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.414 1_19 - 215 KTI12 PF08433.5 270 0.00013 13.9 0.1 2 2 0.079 6.9 -1.6 0.0 222 222 113 113 58 163 0.50 # 14803 # 15447 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.414 2_14 - 332 FtsK_SpoIIIE PF01580.13 205 2.9e-05 16.3 0.1 1 1 1.2e-06 5.1e-05 15.5 0.1 37 63 126 152 109 157 0.80 # 8424 # 9419 # -1 # ID=2_14;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.409 2_16 - 535 FtsK_SpoIIIE PF01580.13 205 0.00045 12.4 0.0 1 1 1.7e-05 0.00074 11.7 0.0 42 74 257 288 223 329 0.73 # 10468 # 12072 # -1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.393 2_14 - 332 ABC_tran PF00005.22 137 4.2e-05 16.6 0.0 1 1 2.5e-06 7.4e-05 15.8 0.0 9 48 125 164 117 231 0.83 # 8424 # 9419 # -1 # ID=2_14;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.409 8_3 - 213 ABC_tran PF00005.22 137 9.5e-05 15.4 0.3 1 1 3.1e-05 0.00091 12.3 0.0 8 29 52 73 46 82 0.86 # 1528 # 2166 # -1 # ID=8_3;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.498 2_16 - 535 ABC_tran PF00005.22 137 0.00013 15.0 0.0 1 1 1.1e-05 0.00032 13.7 0.0 16 37 258 279 254 343 0.80 # 10468 # 12072 # -1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.393 2_16 - 535 TIGR03263 TIGR03263 180 0.00063 11.8 0.0 1 1 1.6e-05 0.0014 10.7 0.0 4 23 256 275 254 301 0.85 # 10468 # 12072 # -1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.393 8_3 - 213 RuvB_N PF05496.7 234 0.00023 12.9 0.0 1 1 4.3e-06 0.00037 12.2 0.0 50 119 55 135 45 143 0.65 # 1528 # 2166 # -1 # ID=8_3;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.498 2_14 - 332 AAA_19 PF13245.1 76 5.5e-05 15.6 0.4 1 1 7.3e-06 0.00016 14.2 0.0 9 36 126 153 119 165 0.84 # 8424 # 9419 # -1 # ID=2_14;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.409 2_16 - 535 AAA_19 PF13245.1 76 0.00017 14.0 0.0 1 1 2e-05 0.00044 12.7 0.0 14 39 257 282 250 290 0.81 # 10468 # 12072 # -1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.393 1_19 - 215 AAA_19 PF13245.1 76 0.00018 14.0 0.5 1 1 2.1e-05 0.00046 12.7 0.4 20 56 11 45 3 64 0.81 # 14803 # 15447 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.414 8_3 - 213 AAA_19 PF13245.1 76 0.00027 13.4 0.0 1 1 3e-05 0.00065 12.2 0.0 10 37 56 82 49 111 0.81 # 1528 # 2166 # -1 # ID=8_3;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.498 8_3 - 213 AAA_10 PF12846.2 304 1.1e-05 17.7 0.1 1 2 2.1e-06 6e-05 15.3 0.1 1 33 55 87 55 124 0.88 # 1528 # 2166 # -1 # ID=8_3;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.498 8_3 - 213 AAA_10 PF12846.2 304 1.1e-05 17.7 0.1 2 2 0.052 1.5 0.8 0.0 201 247 94 145 87 155 0.69 # 1528 # 2166 # -1 # ID=8_3;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.498 2_16 - 535 AAA_10 PF12846.2 304 1.3e-05 17.4 0.0 1 1 7.7e-07 2.2e-05 16.7 0.0 5 40 257 295 254 335 0.74 # 10468 # 12072 # -1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.393 2_14 - 332 AAA_10 PF12846.2 304 0.00022 13.4 0.0 1 1 9.4e-06 0.00027 13.1 0.0 3 37 129 165 127 241 0.80 # 8424 # 9419 # -1 # ID=2_14;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.409 8_3 - 213 ResIII PF04851.10 184 0.00019 14.0 0.0 1 2 5.2e-05 0.0045 9.5 0.0 8 50 42 80 8 88 0.78 # 1528 # 2166 # -1 # ID=8_3;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.498 8_3 - 213 ResIII PF04851.10 184 0.00019 14.0 0.0 2 2 0.0052 0.45 3.0 0.0 112 163 84 134 78 157 0.72 # 1528 # 2166 # -1 # ID=8_3;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.498 5_5 - 138 Viral_helicase1 PF01443.13 234 0.00062 12.0 0.0 1 1 9.6e-06 0.00084 11.6 0.0 33 75 36 79 15 88 0.79 # 2947 # 3360 # -1 # ID=5_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.522 1_19 - 215 DUF2075 PF09848.4 352 7e-06 17.8 0.1 1 1 9.3e-08 8.1e-06 17.7 0.1 5 95 4 90 1 137 0.75 # 14803 # 15447 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.414 2_16 - 535 Adeno_IVa2 PF02456.10 370 2.8e-05 15.5 0.0 1 1 5.1e-07 4.4e-05 14.9 0.0 48 114 210 280 171 291 0.72 # 10468 # 12072 # -1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.393 2_14 - 332 TrwB_AAD_bind PF10412.4 386 0.00018 12.9 0.0 1 1 3.2e-06 0.00028 12.2 0.0 18 47 130 160 123 166 0.80 # 8424 # 9419 # -1 # ID=2_14;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.409 2_16 - 535 ArgK PF03308.11 267 0.0006 11.3 0.0 1 1 1.4e-05 0.0012 10.3 0.0 34 67 258 293 249 304 0.81 # 10468 # 12072 # -1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.393 8_3 - 213 AAA_24 PF13479.1 213 0.0007 11.9 0.1 1 1 2.7e-05 0.0023 10.2 0.0 3 21 55 73 53 82 0.85 # 1528 # 2166 # -1 # ID=8_3;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.498 8_3 - 213 AAA_25 PF13481.1 194 1.6e-05 17.1 0.0 1 1 7e-07 3e-05 16.2 0.0 22 58 43 80 24 114 0.78 # 1528 # 2166 # -1 # ID=8_3;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.498 1_19 - 215 AAA_25 PF13481.1 194 2.8e-05 16.3 0.6 1 1 1.7e-06 7.4e-05 14.9 0.3 41 149 9 85 2 109 0.65 # 14803 # 15447 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.414 8_3 - 213 AAA_28 PF13521.1 163 0.00061 12.5 0.2 1 1 2.1e-05 0.0018 10.9 0.2 1 43 57 104 57 124 0.70 # 1528 # 2166 # -1 # ID=8_3;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.498 8_3 - 213 AAA_5 PF07728.9 139 1.7e-05 17.2 0.3 1 2 5e-06 0.00022 13.7 0.2 1 74 57 126 57 133 0.73 # 1528 # 2166 # -1 # ID=8_3;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.498 8_3 - 213 AAA_5 PF07728.9 139 1.7e-05 17.2 0.3 2 2 0.076 3.3 0.2 0.0 89 123 177 211 170 212 0.64 # 1528 # 2166 # -1 # ID=8_3;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.498 2_16 - 535 AAA_5 PF07728.9 139 0.00028 13.4 0.0 1 2 5e-05 0.0022 10.5 0.0 3 40 257 297 256 352 0.71 # 10468 # 12072 # -1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.393 2_16 - 535 AAA_5 PF07728.9 139 0.00028 13.4 0.0 2 2 0.086 3.7 -0.0 0.0 64 78 496 514 469 527 0.77 # 10468 # 12072 # -1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.393 1_19 - 215 APS_kinase PF01583.15 157 2.4e-06 20.0 0.1 1 1 5.8e-08 5.1e-06 18.9 0.1 11 43 10 42 2 53 0.88 # 14803 # 15447 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.414 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/d1456df8-25e9-4fc8-8d95-4d0a45f407a2 # Target file: checkm_output/bins/pm739/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm739/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/d1456df8-25e9-4fc8-8d95-4d0a45f407a2 checkm_output/bins/pm739/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 17:09:13 2020 # [ok]