# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_7 - 1912 IstB_IS21 PF01695.12 178 7.6e-06 16.8 0.0 1 1 5.6e-07 1.9e-05 15.5 0.0 46 83 439 476 421 523 0.86 # 7167 # 12902 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.443 1_33 - 209 MipZ PF09140.6 261 5.8e-22 69.3 0.5 1 2 1.2e-12 4e-11 33.8 0.0 2 53 2 52 1 60 0.89 # 33960 # 34586 # -1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.453 1_33 - 209 MipZ PF09140.6 261 5.8e-22 69.3 0.5 2 2 1.6e-12 5.4e-11 33.4 0.0 87 140 65 118 58 128 0.92 # 33960 # 34586 # -1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.453 1_33 - 209 YhjQ PF06564.7 244 7.9e-06 16.7 0.3 1 2 1.8e-06 6.1e-05 13.8 0.3 4 38 3 37 1 50 0.89 # 33960 # 34586 # -1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.453 1_33 - 209 YhjQ PF06564.7 244 7.9e-06 16.7 0.3 2 2 0.029 1 0.0 0.0 108 144 69 103 44 113 0.78 # 33960 # 34586 # -1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.453 1_7 - 1912 AAA_22 PF13401.1 131 1.1e-05 16.9 0.5 1 2 6e-06 0.0002 12.9 0.2 6 131 442 576 436 576 0.76 # 7167 # 12902 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.443 1_7 - 1912 AAA_22 PF13401.1 131 1.1e-05 16.9 0.5 2 2 0.089 3 -0.6 0.0 37 88 1829 1879 1805 1897 0.74 # 7167 # 12902 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.443 1_33 - 209 SRP54 PF00448.17 196 8.6e-08 23.2 0.1 1 1 1.5e-08 5.1e-07 20.7 0.1 4 98 2 91 1 134 0.80 # 33960 # 34586 # -1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.453 1_33 - 209 AAA_17 PF13207.1 121 7.4e-06 18.2 0.0 1 1 4.2e-07 1.4e-05 17.3 0.0 9 77 11 84 9 205 0.76 # 33960 # 34586 # -1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.453 1_33 - 209 MobB PF03205.9 140 2e-05 15.7 0.1 1 1 1.6e-06 5.5e-05 14.3 0.0 10 42 11 41 1 46 0.79 # 33960 # 34586 # -1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.453 1_33 - 209 ArsA_ATPase PF02374.10 305 1.1e-08 25.8 0.4 1 2 1.2e-09 3.9e-08 24.0 0.1 3 48 3 48 1 69 0.85 # 33960 # 34586 # -1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.453 1_33 - 209 ArsA_ATPase PF02374.10 305 1.1e-08 25.8 0.4 2 2 0.053 1.8 -1.2 0.0 121 135 69 85 47 86 0.75 # 33960 # 34586 # -1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.453 1_33 - 209 VirC1 PF07015.6 231 9.3e-10 29.3 0.0 1 1 5.9e-11 2e-09 28.2 0.0 3 172 2 164 1 206 0.75 # 33960 # 34586 # -1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.453 1_33 - 209 Fer4_NifH PF00142.13 273 2.5e-05 14.9 0.0 1 1 2.3e-06 7.8e-05 13.3 0.0 8 38 9 39 2 46 0.89 # 33960 # 34586 # -1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.453 1_7 - 1912 AAA_16 PF13191.1 185 1.9e-05 16.1 1.0 1 1 2.6e-06 8.8e-05 13.9 0.2 21 120 437 539 428 607 0.65 # 7167 # 12902 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.443 1_33 - 209 CbiA PF01656.18 195 8.2e-23 72.2 0.0 1 1 4.7e-24 1.6e-22 71.2 0.0 1 154 3 137 3 178 0.78 # 33960 # 34586 # -1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.453 1_33 - 209 AAA_31 PF13614.1 157 1.4e-06 19.7 0.0 1 2 2.5e-07 8.6e-06 17.1 0.0 2 42 2 42 1 55 0.88 # 33960 # 34586 # -1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.453 1_33 - 209 AAA_31 PF13614.1 157 1.4e-06 19.7 0.0 2 2 0.055 1.9 -0.2 0.0 109 127 68 86 62 113 0.68 # 33960 # 34586 # -1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.453 1_7 - 1912 AAA_33 PF13671.1 143 0.00014 13.2 0.5 1 1 3.4e-05 0.0011 10.2 0.5 3 95 444 604 443 622 0.55 # 7167 # 12902 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.443 1_7 - 1912 AAA_30 PF13604.1 196 5.4e-12 37.0 0.1 1 2 1.4e-08 4.7e-07 20.9 0.1 4 104 428 524 425 539 0.78 # 7167 # 12902 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.443 1_7 - 1912 AAA_30 PF13604.1 196 5.4e-12 37.0 0.1 2 2 2.8e-06 9.4e-05 13.4 0.0 95 135 1382 1418 1368 1421 0.85 # 7167 # 12902 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.443 1_7 - 1912 FtsK_SpoIIIE PF01580.13 205 5.9e-07 20.5 0.0 1 2 8.8e-08 3e-06 18.2 0.0 25 88 427 486 406 492 0.78 # 7167 # 12902 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.443 1_7 - 1912 FtsK_SpoIIIE PF01580.13 205 5.9e-07 20.5 0.0 2 2 0.079 2.7 -1.3 0.0 86 114 1867 1893 1865 1900 0.90 # 7167 # 12902 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.443 1_7 - 1912 DAP3 PF10236.4 309 0.00022 11.6 0.0 1 1 1.2e-05 0.00041 10.7 0.0 25 59 442 476 436 516 0.86 # 7167 # 12902 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.443 1_7 - 1912 AAA_19 PF13245.1 76 7.2e-16 49.2 0.4 1 2 2.6e-15 4.4e-14 43.5 0.1 2 63 433 492 432 508 0.84 # 7167 # 12902 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.443 1_7 - 1912 AAA_19 PF13245.1 76 7.2e-16 49.2 0.4 2 2 0.01 0.18 3.1 0.0 26 62 1516 1550 1513 1567 0.78 # 7167 # 12902 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.443 1_33 - 209 AAA_19 PF13245.1 76 0.00019 12.6 0.1 1 2 0.00019 0.0033 8.6 0.0 20 48 11 35 9 44 0.84 # 33960 # 34586 # -1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.453 1_33 - 209 AAA_19 PF13245.1 76 0.00019 12.6 0.1 2 2 0.044 0.76 1.1 0.0 42 62 135 155 118 180 0.75 # 33960 # 34586 # -1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.453 1_7 - 1912 Helicase_RecD PF05127.9 177 5.1e-05 14.3 0.1 1 2 4.5e-05 0.0015 9.5 0.0 1 49 444 491 444 554 0.75 # 7167 # 12902 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.443 1_7 - 1912 Helicase_RecD PF05127.9 177 5.1e-05 14.3 0.1 2 2 0.0087 0.3 2.1 0.0 28 103 1275 1393 1254 1411 0.70 # 7167 # 12902 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.443 1_33 - 209 AAA_10 PF12846.2 304 5.3e-05 14.1 0.0 1 1 7.5e-06 8.5e-05 13.4 0.0 11 39 11 39 3 67 0.90 # 33960 # 34586 # -1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.453 1_7 - 1912 AAA_10 PF12846.2 304 0.00013 12.8 0.2 1 1 6e-05 0.00068 10.4 0.0 2 34 441 473 440 484 0.90 # 7167 # 12902 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.443 1_27 - 132 AAA_10 PF12846.2 304 0.00026 11.8 0.0 1 2 0.0002 0.0023 8.7 0.0 241 264 12 35 9 45 0.89 # 30455 # 30850 # 1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.548 1_27 - 132 AAA_10 PF12846.2 304 0.00026 11.8 0.0 2 2 0.04 0.46 1.2 0.0 209 235 104 128 68 130 0.72 # 30455 # 30850 # 1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.548 1_7 - 1912 AAA_12 PF13087.1 200 2e-14 44.8 0.1 1 1 2.6e-15 9e-14 42.6 0.1 20 198 1456 1637 1450 1639 0.82 # 7167 # 12902 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.443 1_7 - 1912 ResIII PF04851.10 184 1.9e-05 15.9 0.0 1 1 3.2e-06 0.00011 13.5 0.0 25 80 440 498 425 562 0.70 # 7167 # 12902 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.443 1_27 - 132 Zot PF05707.7 193 8.9e-05 13.4 0.0 1 1 4.7e-06 0.00016 12.5 0.0 98 127 5 35 1 46 0.82 # 30455 # 30850 # 1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.548 1_7 - 1912 Viral_helicase1 PF01443.13 234 5.1e-07 20.8 0.0 1 2 2.5e-05 0.00086 10.2 0.0 2 70 444 513 443 520 0.60 # 7167 # 12902 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.443 1_7 - 1912 Viral_helicase1 PF01443.13 234 5.1e-07 20.8 0.0 2 2 0.00018 0.006 7.4 0.0 61 103 1379 1419 1346 1425 0.86 # 7167 # 12902 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.443 1_7 - 1912 AAA_11 PF13086.1 236 3.9e-23 73.6 0.8 1 2 2.1e-11 7e-10 30.2 0.3 3 134 427 590 425 647 0.63 # 7167 # 12902 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.443 1_7 - 1912 AAA_11 PF13086.1 236 3.9e-23 73.6 0.8 2 2 9.2e-15 3.1e-13 41.2 0.0 190 233 1378 1420 1259 1422 0.81 # 7167 # 12902 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.443 1_7 - 1912 ArgK PF03308.11 267 0.00012 12.3 0.0 1 1 8.9e-06 0.0003 10.9 0.0 27 64 438 475 425 478 0.87 # 7167 # 12902 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.443 1_7 - 1912 UvrD-helicase PF00580.16 315 3.6e-10 30.9 1.0 1 2 2.3e-09 7.9e-08 23.2 0.2 12 169 439 613 427 761 0.76 # 7167 # 12902 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.443 1_7 - 1912 UvrD-helicase PF00580.16 315 3.6e-10 30.9 1.0 2 2 0.00038 0.013 6.1 0.1 179 294 1283 1415 1083 1416 0.73 # 7167 # 12902 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.443 1_7 - 1912 AAA_25 PF13481.1 194 1.5e-05 15.8 0.0 1 1 2.4e-06 4.1e-05 14.4 0.0 31 98 438 504 424 548 0.66 # 7167 # 12902 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.443 1_33 - 209 AAA_25 PF13481.1 194 4.5e-05 14.3 0.1 1 1 6.2e-06 0.00011 13.1 0.0 42 87 10 44 3 90 0.78 # 33960 # 34586 # -1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.453 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/65d674ab-26ad-48bf-abd2-a40948120063 # Target file: checkm_output/bins/pm728/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm728/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/65d674ab-26ad-48bf-abd2-a40948120063 checkm_output/bins/pm728/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 17:09:06 2020 # [ok]