# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_4 - 209 MipZ PF09140.6 261 3.6e-22 69.3 0.5 1 2 1.2e-12 2.5e-11 33.8 0.0 2 53 2 52 1 60 0.89 # 2766 # 3392 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.453 1_4 - 209 MipZ PF09140.6 261 3.6e-22 69.3 0.5 2 2 1.6e-12 3.3e-11 33.4 0.0 87 140 65 118 58 128 0.92 # 2766 # 3392 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.453 1_4 - 209 YhjQ PF06564.7 244 4.9e-06 16.7 0.3 1 2 1.8e-06 3.8e-05 13.8 0.3 4 38 3 37 1 50 0.89 # 2766 # 3392 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.453 1_4 - 209 YhjQ PF06564.7 244 4.9e-06 16.7 0.3 2 2 0.029 0.62 0.0 0.0 108 144 69 103 44 113 0.78 # 2766 # 3392 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.453 1_4 - 209 SRP54 PF00448.17 196 5.3e-08 23.2 0.1 1 1 1.5e-08 3.2e-07 20.7 0.1 4 98 2 91 1 134 0.80 # 2766 # 3392 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.453 1_4 - 209 AAA_17 PF13207.1 121 4.6e-06 18.2 0.0 1 1 4.2e-07 8.9e-06 17.3 0.0 9 77 11 84 9 205 0.76 # 2766 # 3392 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.453 1_4 - 209 MobB PF03205.9 140 1.2e-05 15.7 0.1 1 1 1.6e-06 3.4e-05 14.3 0.0 10 42 11 41 1 46 0.79 # 2766 # 3392 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.453 1_4 - 209 ArsA_ATPase PF02374.10 305 6.5e-09 25.8 0.4 1 2 1.2e-09 2.4e-08 24.0 0.1 3 48 3 48 1 69 0.85 # 2766 # 3392 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.453 1_4 - 209 ArsA_ATPase PF02374.10 305 6.5e-09 25.8 0.4 2 2 0.053 1.1 -1.2 0.0 121 135 69 85 47 86 0.75 # 2766 # 3392 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.453 1_4 - 209 VirC1 PF07015.6 231 5.8e-10 29.3 0.0 1 1 5.9e-11 1.2e-09 28.2 0.0 3 172 2 164 1 206 0.75 # 2766 # 3392 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.453 1_4 - 209 Fer4_NifH PF00142.13 273 1.6e-05 14.9 0.0 1 1 2.3e-06 4.8e-05 13.3 0.0 8 38 9 39 2 46 0.89 # 2766 # 3392 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.453 1_4 - 209 CbiA PF01656.18 195 5.1e-23 72.2 0.0 1 1 4.7e-24 9.9e-23 71.2 0.0 1 154 3 137 3 178 0.78 # 2766 # 3392 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.453 1_4 - 209 AAA_31 PF13614.1 157 8.9e-07 19.7 0.0 1 2 2.5e-07 5.3e-06 17.1 0.0 2 42 2 42 1 55 0.88 # 2766 # 3392 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.453 1_4 - 209 AAA_31 PF13614.1 157 8.9e-07 19.7 0.0 2 2 0.055 1.2 -0.2 0.0 109 127 68 86 62 113 0.68 # 2766 # 3392 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.453 1_4 - 209 AAA_19 PF13245.1 76 0.00012 12.6 0.1 1 2 9.6e-05 0.002 8.6 0.0 20 48 11 35 9 44 0.84 # 2766 # 3392 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.453 1_4 - 209 AAA_19 PF13245.1 76 0.00012 12.6 0.1 2 2 0.022 0.47 1.1 0.0 42 62 135 155 118 180 0.75 # 2766 # 3392 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.453 1_4 - 209 AAA_10 PF12846.2 304 3.3e-05 14.1 0.0 1 1 5e-06 5.3e-05 13.4 0.0 11 39 11 39 3 67 0.90 # 2766 # 3392 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.453 1_10 - 132 AAA_10 PF12846.2 304 0.00016 11.8 0.0 1 2 0.00014 0.0014 8.7 0.0 241 264 12 35 9 45 0.89 # 6494 # 6889 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.551 1_10 - 132 AAA_10 PF12846.2 304 0.00016 11.8 0.0 2 2 0.027 0.28 1.2 0.0 209 235 104 128 68 130 0.72 # 6494 # 6889 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.551 1_10 - 132 Zot PF05707.7 193 5.5e-05 13.4 0.0 1 1 4.7e-06 9.9e-05 12.5 0.0 98 127 5 35 1 46 0.82 # 6494 # 6889 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.551 1_4 - 209 AAA_25 PF13481.1 194 2.8e-05 14.3 0.1 1 1 3.1e-06 6.5e-05 13.1 0.0 42 87 10 44 3 90 0.78 # 2766 # 3392 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.453 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/a229477f-bcde-423d-89df-f55b52017f2b # Target file: checkm_output/bins/pm723/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm723/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/a229477f-bcde-423d-89df-f55b52017f2b checkm_output/bins/pm723/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 17:09:02 2020 # [ok]