# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_13 - 234 UPF0020 PF01170.13 180 0.00018 14.0 0.0 1 2 5.7e-05 0.0057 9.1 0.0 103 118 17 32 5 82 0.83 # 8684 # 9385 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.613 1_13 - 234 UPF0020 PF01170.13 180 0.00018 14.0 0.0 2 2 0.0045 0.46 2.9 0.0 28 44 170 186 165 226 0.79 # 8684 # 9385 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.613 1_7 - 209 MipZ PF09140.6 261 1.2e-07 23.9 0.0 1 1 1.6e-09 1.6e-07 23.5 0.0 2 55 4 57 3 127 0.72 # 4766 # 5392 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.442 1_21 - 186 SSB PF00436.20 104 3.6e-41 132.2 0.2 1 1 4.4e-43 4.4e-41 131.9 0.2 1 99 6 105 6 113 0.95 # 13594 # 14151 # 1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.624 1_68 - 1754 UvrD_C_2 PF13538.1 104 9.2e-06 18.7 0.2 1 1 4.5e-07 4.5e-05 16.5 0.1 3 100 1340 1441 1338 1445 0.73 # 50557 # 55818 # 1 # ID=1_68;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.628 1_52 - 880 DUF87 PF01935.12 229 2.6e-06 20.3 0.0 1 1 1.3e-07 1.3e-05 18.0 0.0 26 223 484 675 479 681 0.77 # 33491 # 36130 # 1 # ID=1_52;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.562 1_68 - 1754 AAA_22 PF13401.1 131 0.00049 13.2 0.1 1 2 0.0053 0.54 3.4 0.0 88 121 500 536 465 538 0.71 # 50557 # 55818 # 1 # ID=1_68;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.628 1_68 - 1754 AAA_22 PF13401.1 131 0.00049 13.2 0.1 2 2 0.0009 0.091 5.8 0.0 5 28 988 1011 984 1063 0.79 # 50557 # 55818 # 1 # ID=1_68;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.628 1_13 - 234 N6_N4_Mtase PF01555.13 231 1.5e-31 102.6 0.0 1 2 3.3e-14 3.4e-12 39.2 0.0 1 113 21 130 21 137 0.88 # 8684 # 9385 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.613 1_13 - 234 N6_N4_Mtase PF01555.13 231 1.5e-31 102.6 0.0 2 2 5.1e-21 5.1e-19 61.5 0.0 170 227 149 206 136 210 0.93 # 8684 # 9385 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.613 2_4 - 370 ADH_zinc_N_2 PF13602.1 127 3.9e-06 20.7 0.0 1 1 9.8e-08 9.9e-06 19.4 0.0 2 121 231 362 230 363 0.62 # 2164 # 3273 # -1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.540 2_4 - 370 ADH_zinc_N PF00107.21 130 5.2e-23 74.0 0.1 1 1 8.3e-25 8.4e-23 73.3 0.1 1 128 197 330 197 332 0.86 # 2164 # 3273 # -1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.540 1_7 - 209 F420_oxidored PF03807.12 96 0.00068 13.0 0.1 1 2 0.0093 0.94 2.9 0.0 48 68 88 107 19 112 0.78 # 4766 # 5392 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.442 1_7 - 209 F420_oxidored PF03807.12 96 0.00068 13.0 0.1 2 2 0.00026 0.027 7.9 0.0 14 43 121 150 119 203 0.78 # 4766 # 5392 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.442 1_67 - 767 AAA_16 PF13191.1 185 4.7e-06 19.6 0.0 1 1 2.6e-07 2.6e-05 17.2 0.0 21 56 182 218 179 253 0.78 # 48257 # 50557 # 1 # ID=1_67;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.570 1_7 - 209 CbiA PF01656.18 195 7e-11 34.8 0.2 1 1 3.6e-12 3.6e-10 32.5 0.2 1 190 5 170 5 178 0.64 # 4766 # 5392 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.442 1_67 - 767 TraG-D_C PF12696.2 128 9.4e-20 63.7 0.0 1 1 2.2e-21 2.2e-19 62.5 0.0 1 127 419 541 419 542 0.88 # 48257 # 50557 # 1 # ID=1_67;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.570 1_13 - 234 Methyltransf_26 PF13659.1 117 6e-10 32.1 0.2 1 2 3.1e-07 3.1e-05 16.9 0.0 63 114 13 71 3 74 0.67 # 8684 # 9385 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.613 1_13 - 234 Methyltransf_26 PF13659.1 117 6e-10 32.1 0.2 2 2 5e-06 0.0005 13.0 0.1 4 44 174 213 171 227 0.80 # 8684 # 9385 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.613 2_4 - 370 2-Hacid_dh_C PF02826.14 178 0.00072 11.6 0.1 1 1 1.3e-05 0.0013 10.8 0.1 36 73 187 225 176 237 0.82 # 2164 # 3273 # -1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.540 1_68 - 1754 AAA_30 PF13604.1 196 1.6e-45 148.0 8.6 1 2 1.6e-06 0.00016 14.2 1.7 9 126 424 536 422 560 0.86 # 50557 # 55818 # 1 # ID=1_68;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.628 1_68 - 1754 AAA_30 PF13604.1 196 1.6e-45 148.0 8.6 2 2 5.8e-44 5.8e-42 136.4 0.7 2 186 971 1158 970 1162 0.94 # 50557 # 55818 # 1 # ID=1_68;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.628 1_52 - 880 FtsK_SpoIIIE PF01580.13 205 0.00012 14.5 0.0 1 1 2.7e-06 0.00027 13.3 0.0 39 63 480 506 466 508 0.85 # 33491 # 36130 # 1 # ID=1_52;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.562 2_4 - 370 Met_10 PF02475.11 200 0.00068 12.2 0.0 1 1 1.2e-05 0.0012 11.4 0.0 98 143 183 229 178 278 0.85 # 2164 # 3273 # -1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.540 1_13 - 234 Cons_hypoth95 PF03602.10 183 6e-05 15.4 0.0 1 2 0.00015 0.016 7.5 0.0 113 170 19 78 12 86 0.75 # 8684 # 9385 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.613 1_13 - 234 Cons_hypoth95 PF03602.10 183 6e-05 15.4 0.0 2 2 0.00051 0.051 5.8 0.0 41 60 169 188 157 225 0.74 # 8684 # 9385 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.613 1_7 - 209 UDPG_MGDP_dh_N PF03721.9 185 2.5e-05 16.7 0.0 1 2 0.079 8 -1.3 0.0 14 36 22 44 21 53 0.82 # 4766 # 5392 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.442 1_7 - 209 UDPG_MGDP_dh_N PF03721.9 185 2.5e-05 16.7 0.0 2 2 7.9e-07 8e-05 15.0 0.0 66 162 90 185 79 190 0.77 # 4766 # 5392 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.442 1_68 - 1754 AAA_19 PF13245.1 76 4.3e-07 22.6 0.3 1 1 2e-08 2e-06 20.5 0.3 5 75 981 1048 976 1049 0.72 # 50557 # 55818 # 1 # ID=1_68;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.628 1_52 - 880 AAA_10 PF12846.2 304 1.5e-46 152.1 0.0 1 1 4.6e-48 2.3e-46 151.4 0.0 1 294 481 773 481 779 0.87 # 33491 # 36130 # 1 # ID=1_52;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.562 1_67 - 767 AAA_10 PF12846.2 304 1.5e-09 30.5 0.0 1 1 9.1e-09 4.6e-07 22.4 0.0 3 296 187 494 186 499 0.65 # 48257 # 50557 # 1 # ID=1_67;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.570 1_29 - 292 Methyltransf_27 PF13708.1 194 3.2e-63 205.7 0.0 1 1 3.9e-65 4e-63 205.4 0.0 5 194 95 287 91 287 0.94 # 19455 # 20330 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.587 1_67 - 767 TrwB_AAD_bind PF10412.4 386 4.5e-148 485.8 0.0 1 1 1.1e-149 5.8e-148 485.4 0.0 2 386 172 561 171 561 0.99 # 48257 # 50557 # 1 # ID=1_67;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.570 1_52 - 880 TrwB_AAD_bind PF10412.4 386 1.4e-05 16.7 0.1 1 1 7.5e-07 3.8e-05 15.3 0.0 16 94 482 556 474 569 0.72 # 33491 # 36130 # 1 # ID=1_52;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.562 1_68 - 1754 AAA_11 PF13086.1 236 2.2e-06 20.3 0.1 1 2 6.8e-06 0.00069 12.1 0.0 2 75 971 1041 970 1061 0.76 # 50557 # 55818 # 1 # ID=1_68;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.628 1_68 - 1754 AAA_11 PF13086.1 236 2.2e-06 20.3 0.1 2 2 0.00083 0.084 5.3 0.1 194 231 1067 1107 1043 1109 0.73 # 50557 # 55818 # 1 # ID=1_68;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.628 1_67 - 767 T4SS-DNA_transf PF02534.9 469 1.3e-08 26.8 0.0 1 2 0.033 3.3 -1.0 0.0 127 199 259 330 249 358 0.73 # 48257 # 50557 # 1 # ID=1_67;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.570 1_67 - 767 T4SS-DNA_transf PF02534.9 469 1.3e-08 26.8 0.0 2 2 4.6e-10 4.7e-08 24.9 0.0 275 392 393 506 363 559 0.74 # 48257 # 50557 # 1 # ID=1_67;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.570 1_52 - 880 Pox_A32 PF04665.7 241 7.4e-05 15.0 0.0 1 1 1.5e-06 0.00015 14.0 0.0 6 40 474 508 470 523 0.82 # 33491 # 36130 # 1 # ID=1_52;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.562 2_4 - 370 TrkA_N PF02254.13 116 2.4e-05 17.3 0.0 1 1 3.9e-07 4e-05 16.6 0.0 1 46 190 237 190 279 0.85 # 2164 # 3273 # -1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.540 2_4 - 370 AlaDh_PNT_C PF01262.16 168 0.00049 12.6 0.6 1 1 2.1e-05 0.0021 10.5 0.1 15 69 181 237 171 249 0.84 # 2164 # 3273 # -1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.540 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/b8e983fd-a5e9-4168-aaf0-8472e9736857 # Target file: checkm_output/bins/pm722/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm722/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/b8e983fd-a5e9-4168-aaf0-8472e9736857 checkm_output/bins/pm722/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 17:09:05 2020 # [ok]