# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 2_7 - 372 ATP_bind_3 PF01171.15 182 0.00014 14.2 0.0 1 2 5.2e-05 0.0051 9.2 0.0 1 59 52 110 52 129 0.78 # 3300 # 4415 # -1 # ID=2_7;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.520 2_7 - 372 ATP_bind_3 PF01171.15 182 0.00014 14.2 0.0 2 2 0.005 0.49 2.7 0.0 134 161 232 260 207 262 0.72 # 3300 # 4415 # -1 # ID=2_7;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.520 3_10 - 347 Seryl_tRNA_N PF02403.17 108 0.025 7.5 46.3 1 5 0.019 1.8 1.5 8.8 39 98 89 152 77 158 0.72 # 5547 # 6587 # 1 # ID=3_10;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.509 3_10 - 347 Seryl_tRNA_N PF02403.17 108 0.025 7.5 46.3 2 5 0.00084 0.082 5.9 3.1 50 100 146 196 143 199 0.89 # 5547 # 6587 # 1 # ID=3_10;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.509 3_10 - 347 Seryl_tRNA_N PF02403.17 108 0.025 7.5 46.3 3 5 2.6e-06 0.00025 13.9 12.2 19 100 216 294 201 297 0.85 # 5547 # 6587 # 1 # ID=3_10;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.509 3_10 - 347 Seryl_tRNA_N PF02403.17 108 0.025 7.5 46.3 4 5 0.00031 0.03 7.3 2.1 62 105 284 327 282 330 0.90 # 5547 # 6587 # 1 # ID=3_10;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.509 3_10 - 347 Seryl_tRNA_N PF02403.17 108 0.025 7.5 46.3 5 5 0.0059 0.57 3.1 1.6 82 105 304 327 296 345 0.51 # 5547 # 6587 # 1 # ID=3_10;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.509 1_13 - 262 MipZ PF09140.6 261 1.7e-10 33.2 0.0 1 2 6.6e-10 6.4e-08 24.8 0.0 2 52 4 55 3 81 0.83 # 7763 # 8548 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.534 1_13 - 262 MipZ PF09140.6 261 1.7e-10 33.2 0.0 2 2 0.00031 0.03 6.2 0.0 89 122 117 150 89 166 0.74 # 7763 # 8548 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.534 3_12 - 504 UvrD_C_2 PF13538.1 104 7.4e-11 35.0 0.0 1 1 3.5e-12 3.4e-10 32.9 0.0 46 99 393 463 352 467 0.67 # 6874 # 8385 # 1 # ID=3_12;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.509 3_12 - 504 AAA_22 PF13401.1 131 3.2e-05 17.0 0.0 1 2 2.7e-05 0.0026 10.8 0.0 8 68 23 92 17 122 0.63 # 6874 # 8385 # 1 # ID=3_12;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.509 3_12 - 504 AAA_22 PF13401.1 131 3.2e-05 17.0 0.0 2 2 0.005 0.48 3.4 0.0 82 124 189 225 164 229 0.77 # 6874 # 8385 # 1 # ID=3_12;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.509 1_2 - 476 DNA_methylase PF00145.12 335 5.8e-11 34.9 0.0 1 2 2.1e-11 2e-09 29.8 0.0 71 160 228 320 199 324 0.83 # 951 # 2378 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.530 1_2 - 476 DNA_methylase PF00145.12 335 5.8e-11 34.9 0.0 2 2 0.0031 0.3 2.9 0.0 290 330 407 448 341 452 0.73 # 951 # 2378 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.530 1_13 - 262 ArsA_ATPase PF02374.10 305 5.6e-06 18.4 0.0 1 2 3e-07 2.9e-05 16.0 0.0 7 40 9 43 2 79 0.84 # 7763 # 8548 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.534 1_13 - 262 ArsA_ATPase PF02374.10 305 5.6e-06 18.4 0.0 2 2 0.029 2.8 -0.3 0.0 124 136 124 136 106 143 0.79 # 7763 # 8548 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.534 3_12 - 504 PhoH PF02562.11 205 2.5e-06 19.7 0.2 1 2 0.0013 0.13 4.3 0.0 22 45 22 45 4 61 0.78 # 6874 # 8385 # 1 # ID=3_12;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.509 3_12 - 504 PhoH PF02562.11 205 2.5e-06 19.7 0.2 2 2 7.5e-06 0.00072 11.7 0.0 122 168 196 240 193 255 0.83 # 6874 # 8385 # 1 # ID=3_12;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.509 2_7 - 372 TIGR02432 TIGR02432 189 3.9e-05 16.2 0.1 1 2 1.1e-05 0.001 11.5 0.0 1 58 52 109 52 119 0.85 # 3300 # 4415 # -1 # ID=2_7;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.520 2_7 - 372 TIGR02432 TIGR02432 189 3.9e-05 16.2 0.1 2 2 0.0084 0.82 2.1 0.0 140 165 235 260 207 262 0.76 # 3300 # 4415 # -1 # ID=2_7;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.520 3_10 - 347 AAA_13 PF13166.1 712 0.0065 7.7 36.6 1 2 0.0019 0.18 2.9 28.3 283 457 85 259 71 272 0.58 # 5547 # 6587 # 1 # ID=3_10;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.509 3_10 - 347 AAA_13 PF13166.1 712 0.0065 7.7 36.6 2 2 2.3e-05 0.0023 9.2 23.2 287 474 160 339 154 345 0.78 # 5547 # 6587 # 1 # ID=3_10;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.509 1_13 - 262 CbiA PF01656.18 195 1.1e-30 99.3 0.0 1 1 1.5e-32 1.5e-30 98.9 0.0 1 170 5 205 5 229 0.77 # 7763 # 8548 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.534 3_12 - 504 AAA_14 PF13173.1 128 1.6e-05 17.7 1.3 1 2 2.5e-05 0.0025 10.6 0.1 11 46 28 62 18 156 0.76 # 6874 # 8385 # 1 # ID=3_12;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.509 3_12 - 504 AAA_14 PF13173.1 128 1.6e-05 17.7 1.3 2 2 0.0011 0.11 5.3 0.0 51 99 176 227 127 241 0.73 # 6874 # 8385 # 1 # ID=3_12;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.509 3_12 - 504 UvrD_C PF13361.1 351 8.8e-11 34.6 0.0 1 1 1.7e-12 1.7e-10 33.7 0.0 238 347 359 468 334 472 0.76 # 6874 # 8385 # 1 # ID=3_12;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.509 2_7 - 372 PAPS_reduct PF01507.14 174 3.4e-12 39.4 0.4 1 2 0.014 1.4 1.6 0.0 2 17 53 68 52 91 0.76 # 3300 # 4415 # -1 # ID=2_7;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.520 2_7 - 372 PAPS_reduct PF01507.14 174 3.4e-12 39.4 0.4 2 2 4.4e-13 4.3e-11 35.8 0.1 58 172 154 279 145 281 0.85 # 3300 # 4415 # -1 # ID=2_7;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.520 1_10 - 212 N6_Mtase PF02384.11 311 3.6e-07 22.3 0.0 1 1 5.9e-09 5.8e-07 21.7 0.0 3 97 71 166 69 201 0.72 # 5569 # 6204 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.522 1_13 - 262 AAA_31 PF13614.1 157 1.3e-10 34.3 0.0 1 1 2.6e-12 2.6e-10 33.3 0.0 1 149 3 157 3 165 0.79 # 7763 # 8548 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.534 3_12 - 504 AAA_30 PF13604.1 196 4.7e-08 25.7 0.1 1 2 9.2e-07 8.9e-05 15.0 0.0 19 80 20 81 11 109 0.77 # 6874 # 8385 # 1 # ID=3_12;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.509 3_12 - 504 AAA_30 PF13604.1 196 4.7e-08 25.7 0.1 2 2 0.00017 0.017 7.5 0.0 115 133 211 229 174 278 0.75 # 6874 # 8385 # 1 # ID=3_12;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.509 3_12 - 504 AAA_19 PF13245.1 76 1.5e-09 30.4 0.0 1 1 4.2e-11 4.1e-09 29.0 0.0 8 75 18 77 12 78 0.88 # 6874 # 8385 # 1 # ID=3_12;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.509 3_12 - 504 ResIII PF04851.10 184 1e-06 21.5 0.0 1 1 2.8e-08 2.7e-06 20.2 0.0 23 75 17 69 7 107 0.78 # 6874 # 8385 # 1 # ID=3_12;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.509 3_10 - 347 DUF3584 PF12128.3 1201 0.016 5.3 51.1 1 2 0.0051 0.49 0.4 32.3 377 534 86 242 42 246 0.65 # 5547 # 6587 # 1 # ID=3_10;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.509 3_10 - 347 DUF3584 PF12128.3 1201 0.016 5.3 51.1 2 2 2e-05 0.0019 8.3 20.6 613 709 225 327 220 345 0.80 # 5547 # 6587 # 1 # ID=3_10;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.509 3_12 - 504 Viral_helicase1 PF01443.13 234 8.8e-11 34.6 0.0 1 3 1.4e-05 0.0014 11.0 0.0 2 49 23 73 22 87 0.67 # 6874 # 8385 # 1 # ID=3_12;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.509 3_12 - 504 Viral_helicase1 PF01443.13 234 8.8e-11 34.6 0.0 2 3 1.8e-05 0.0018 10.7 0.0 56 105 188 234 146 256 0.78 # 6874 # 8385 # 1 # ID=3_12;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.509 3_12 - 504 Viral_helicase1 PF01443.13 234 8.8e-11 34.6 0.0 3 3 5.2e-05 0.005 9.2 0.0 176 227 404 462 344 467 0.75 # 6874 # 8385 # 1 # ID=3_12;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.509 3_12 - 504 AAA_11 PF13086.1 236 2.8e-07 23.2 0.1 1 1 1.9e-08 1.8e-06 20.5 0.1 23 228 25 228 8 229 0.66 # 6874 # 8385 # 1 # ID=3_12;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.509 2_7 - 372 tRNA_Me_trans PF03054.11 356 3.7e-05 15.2 0.0 1 2 1.1e-06 0.00011 13.6 0.0 2 71 52 122 51 144 0.74 # 3300 # 4415 # -1 # ID=2_7;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.520 2_7 - 372 tRNA_Me_trans PF03054.11 356 3.7e-05 15.2 0.0 2 2 0.042 4 -1.4 0.0 193 224 274 305 236 311 0.83 # 3300 # 4415 # -1 # ID=2_7;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.520 3_12 - 504 UvrD-helicase PF00580.16 315 5.3e-17 54.9 3.9 1 2 2.9e-06 0.00028 13.1 0.1 2 38 8 44 7 64 0.81 # 6874 # 8385 # 1 # ID=3_12;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.509 3_12 - 504 UvrD-helicase PF00580.16 315 5.3e-17 54.9 3.9 2 2 3.4e-15 3.3e-13 42.4 0.3 236 305 161 239 46 246 0.72 # 6874 # 8385 # 1 # ID=3_12;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.509 1_13 - 262 AAA_25 PF13481.1 194 0.00038 12.7 0.0 1 1 6e-06 0.00059 12.1 0.0 42 91 12 51 11 134 0.78 # 7763 # 8548 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.534 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/f1ff98cd-faef-4e0b-bef0-018a0d51002d # Target file: checkm_output/bins/pm717/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm717/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/f1ff98cd-faef-4e0b-bef0-018a0d51002d checkm_output/bins/pm717/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 17:08:58 2020 # [ok]