# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 3_12 - 258 Eno-Rase_NADH_b PF12242.3 78 9.8e-05 15.5 0.1 1 1 3e-06 0.00041 13.5 0.2 37 65 6 32 1 44 0.77 # 8483 # 9256 # -1 # ID=3_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.540 4_14 - 259 UPF0020 PF01170.13 180 2.6e-06 20.4 0.0 1 2 4.7e-05 0.0033 10.4 0.0 84 120 24 59 12 104 0.77 # 7764 # 8540 # -1 # ID=4_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=3-4bp;gc_cont=0.611 4_14 - 259 UPF0020 PF01170.13 180 2.6e-06 20.4 0.0 2 2 0.00022 0.015 8.2 0.0 28 51 195 218 190 252 0.75 # 7764 # 8540 # -1 # ID=4_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=3-4bp;gc_cont=0.611 4_5 - 188 UPF0020 PF01170.13 180 3.6e-05 16.7 0.0 1 1 2.1e-06 0.00015 14.7 0.0 19 43 41 65 39 137 0.80 # 823 # 1386 # -1 # ID=4_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.599 4_5 - 188 RrnaAD PF00398.15 262 1.1e-05 17.9 0.0 1 1 1.1e-07 1.5e-05 17.5 0.0 10 113 30 128 26 139 0.87 # 823 # 1386 # -1 # ID=4_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.599 2_5 - 211 MipZ PF09140.6 261 7.8e-09 28.3 0.1 1 2 5.5e-08 7.5e-06 18.5 0.1 5 135 7 116 3 151 0.75 # 2795 # 3427 # -1 # ID=2_5;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.491 2_5 - 211 MipZ PF09140.6 261 7.8e-09 28.3 0.1 2 2 0.076 10 -1.6 0.0 212 237 168 193 141 202 0.77 # 2795 # 3427 # -1 # ID=2_5;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.491 3_12 - 258 3HCDH_N PF02737.13 180 0.00047 13.2 1.1 1 2 9.2e-06 0.0013 11.8 0.5 6 70 15 80 9 94 0.78 # 8483 # 9256 # -1 # ID=3_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.540 3_12 - 258 3HCDH_N PF02737.13 180 0.00047 13.2 1.1 2 2 0.055 7.6 -0.5 0.0 12 30 169 187 162 231 0.71 # 8483 # 9256 # -1 # ID=3_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.540 6_1 - 223 SSB PF00436.20 104 1.6e-42 137.0 0.3 1 1 1.8e-44 2.5e-42 136.4 0.3 1 103 58 164 58 165 0.97 # 3 # 671 # 1 # ID=6_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.523 4_5 - 188 Methyltransf_18 PF12847.2 112 2.4e-07 24.7 0.0 1 1 2.8e-09 3.9e-07 24.0 0.0 2 107 51 144 50 146 0.90 # 823 # 1386 # -1 # ID=4_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.599 4_15 - 680 UvrD_C_2 PF13538.1 104 2.8e-11 36.9 0.0 1 1 1.4e-12 9.9e-11 35.1 0.0 23 104 505 607 490 607 0.83 # 9634 # 11673 # -1 # ID=4_15;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.505 1_23 - 1724 UvrD_C_2 PF13538.1 104 1.6e-05 18.4 0.1 1 1 2.3e-07 1.6e-05 18.4 0.1 4 101 1347 1448 1344 1451 0.72 # 21773 # 26944 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.498 1_11 - 874 DUF87 PF01935.12 229 6.6e-07 22.7 0.0 1 1 1.7e-08 2.4e-06 20.9 0.0 30 184 490 636 489 666 0.75 # 6314 # 8935 # 1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.406 3_10 - 323 AAA_22 PF13401.1 131 4.5e-12 39.6 0.2 1 1 2.5e-13 1.1e-11 38.3 0.2 3 129 39 170 35 172 0.81 # 6053 # 7021 # 1 # ID=3_10;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.539 4_15 - 680 AAA_22 PF13401.1 131 1.7e-05 18.4 0.2 1 2 0.00019 0.0088 9.6 0.0 4 65 17 75 13 106 0.77 # 9634 # 11673 # -1 # ID=4_15;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.505 4_15 - 680 AAA_22 PF13401.1 131 1.7e-05 18.4 0.2 2 2 0.002 0.093 6.2 0.0 41 108 152 232 112 246 0.62 # 9634 # 11673 # -1 # ID=4_15;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.505 1_23 - 1724 AAA_22 PF13401.1 131 0.00048 13.6 1.9 1 1 0.00015 0.0069 9.9 0.0 4 112 1015 1114 1011 1141 0.62 # 21773 # 26944 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.498 4_14 - 259 N6_N4_Mtase PF01555.13 231 2.1e-32 105.8 0.0 1 2 8.5e-13 1.2e-10 34.6 0.0 1 113 46 155 46 163 0.85 # 7764 # 8540 # -1 # ID=4_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=3-4bp;gc_cont=0.611 4_14 - 259 N6_N4_Mtase PF01555.13 231 2.1e-32 105.8 0.0 2 2 2.1e-23 2.9e-21 69.4 0.0 169 227 173 231 160 235 0.93 # 7764 # 8540 # -1 # ID=4_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=3-4bp;gc_cont=0.611 2_5 - 211 ArsA_ATPase PF02374.10 305 0.00011 14.7 0.8 1 2 8.2e-06 0.0011 11.3 0.9 5 32 7 34 1 46 0.85 # 2795 # 3427 # -1 # ID=2_5;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.491 2_5 - 211 ArsA_ATPase PF02374.10 305 0.00011 14.7 0.8 2 2 0.01 1.4 1.2 0.0 103 134 55 87 38 90 0.82 # 2795 # 3427 # -1 # ID=2_5;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.491 3_10 - 323 AAA_16 PF13191.1 185 1.6e-07 24.8 0.9 1 1 8.4e-08 5.8e-06 19.8 0.2 18 179 34 153 22 162 0.74 # 6053 # 7021 # 1 # ID=3_10;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.539 1_22 - 711 AAA_16 PF13191.1 185 6.7e-06 19.5 0.0 1 1 6.7e-07 4.6e-05 16.8 0.0 14 55 183 225 182 246 0.86 # 19639 # 21771 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.433 3_12 - 258 adh_short PF00106.20 167 1.9e-24 79.8 2.1 1 1 2e-26 2.7e-24 79.3 2.1 3 166 10 175 8 176 0.89 # 8483 # 9256 # -1 # ID=3_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.540 2_5 - 211 CbiA PF01656.18 195 9.7e-16 51.1 0.2 1 1 1.9e-17 2.6e-15 49.7 0.2 3 181 7 167 5 180 0.74 # 2795 # 3427 # -1 # ID=2_5;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.491 1_22 - 711 AAA_29 PF13555.1 62 0.00085 12.2 0.0 1 1 1.4e-05 0.002 11.1 0.0 22 40 192 210 182 221 0.82 # 19639 # 21771 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.433 1_23 - 1724 AAA PF00004.24 132 0.00015 15.4 0.2 1 3 0.04 2.8 1.5 0.0 64 98 114 150 113 168 0.69 # 21773 # 26944 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.498 1_23 - 1724 AAA PF00004.24 132 0.00015 15.4 0.2 2 3 0.046 3.2 1.3 0.0 81 114 476 509 459 513 0.87 # 21773 # 26944 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.498 1_23 - 1724 AAA PF00004.24 132 0.00015 15.4 0.2 3 3 0.00075 0.052 7.1 0.0 3 41 1020 1059 1018 1108 0.76 # 21773 # 26944 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.498 3_10 - 323 AAA PF00004.24 132 0.00052 13.6 0.0 1 1 1.7e-05 0.0012 12.5 0.0 3 74 45 140 43 178 0.71 # 6053 # 7021 # 1 # ID=3_10;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.539 4_15 - 680 UvrD_C PF13361.1 351 3e-23 76.1 0.0 1 3 0.093 13 -1.6 0.0 61 100 32 71 20 90 0.78 # 9634 # 11673 # -1 # ID=4_15;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.505 4_15 - 680 UvrD_C PF13361.1 351 3e-23 76.1 0.0 2 3 0.00071 0.098 5.4 0.0 74 118 332 377 289 388 0.79 # 9634 # 11673 # -1 # ID=4_15;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.505 4_15 - 680 UvrD_C PF13361.1 351 3e-23 76.1 0.0 3 3 9.9e-23 1.4e-20 67.4 0.0 290 347 538 607 519 611 0.91 # 9634 # 11673 # -1 # ID=4_15;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.505 3_12 - 258 KR PF08659.5 181 1.2e-11 37.9 2.5 1 1 1.8e-13 2.5e-11 36.9 2.5 4 162 11 170 9 190 0.79 # 8483 # 9256 # -1 # ID=3_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.540 8_9 - 278 N6_Mtase PF02384.11 311 5.2e-12 38.8 0.0 1 1 1.3e-13 9.2e-12 37.9 0.0 25 117 139 237 133 248 0.84 # 3238 # 4071 # 1 # ID=8_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.549 4_5 - 188 N6_Mtase PF02384.11 311 0.0011 11.4 0.0 1 2 0.00011 0.0074 8.7 0.0 28 71 32 75 22 89 0.83 # 823 # 1386 # -1 # ID=4_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.599 4_5 - 188 N6_Mtase PF02384.11 311 0.0011 11.4 0.0 2 2 0.057 3.9 -0.3 0.0 123 137 110 124 102 132 0.81 # 823 # 1386 # -1 # ID=4_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.599 1_22 - 711 TraG-D_C PF12696.2 128 2.4e-19 62.9 0.0 1 1 5.9e-21 8.1e-19 61.1 0.0 1 127 428 550 428 551 0.84 # 19639 # 21771 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.433 2_5 - 211 AAA_31 PF13614.1 157 2e-06 21.2 0.0 1 2 1e-06 0.00014 15.2 0.0 2 42 4 44 4 54 0.87 # 2795 # 3427 # -1 # ID=2_5;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.491 2_5 - 211 AAA_31 PF13614.1 157 2e-06 21.2 0.0 2 2 0.0033 0.45 3.8 0.0 112 151 72 112 62 117 0.83 # 2795 # 3427 # -1 # ID=2_5;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.491 4_5 - 188 Methyltransf_26 PF13659.1 117 1.8e-12 40.7 0.1 1 1 6.4e-14 2.9e-12 40.0 0.1 2 111 52 144 51 149 0.91 # 823 # 1386 # -1 # ID=4_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.599 4_14 - 259 Methyltransf_26 PF13659.1 117 3e-11 36.8 0.3 1 2 5.9e-07 2.7e-05 17.6 0.0 54 113 29 95 4 110 0.74 # 7764 # 8540 # -1 # ID=4_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=3-4bp;gc_cont=0.611 4_14 - 259 Methyltransf_26 PF13659.1 117 3e-11 36.8 0.3 2 2 7e-07 3.2e-05 17.3 0.1 4 44 199 238 196 253 0.80 # 7764 # 8540 # -1 # ID=4_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=3-4bp;gc_cont=0.611 8_9 - 278 Methyltransf_26 PF13659.1 117 9.4e-05 15.8 0.1 1 1 4.7e-06 0.00021 14.7 0.1 3 68 171 241 170 262 0.82 # 3238 # 4071 # 1 # ID=8_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.549 1_23 - 1724 AAA_30 PF13604.1 196 1e-44 145.8 11.3 1 2 0.00015 0.01 8.7 1.3 32 127 482 567 455 642 0.75 # 21773 # 26944 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.498 1_23 - 1724 AAA_30 PF13604.1 196 1e-44 145.8 11.3 2 2 4.9e-45 3.4e-43 140.8 2.9 2 184 999 1181 998 1186 0.96 # 21773 # 26944 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.498 4_15 - 680 AAA_30 PF13604.1 196 0.00042 13.3 0.0 1 2 0.00018 0.012 8.5 0.0 7 42 10 42 4 80 0.71 # 9634 # 11673 # -1 # ID=4_15;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.505 4_15 - 680 AAA_30 PF13604.1 196 0.00042 13.3 0.0 2 2 0.014 0.94 2.3 0.0 97 133 213 248 196 300 0.84 # 9634 # 11673 # -1 # ID=4_15;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.505 1_22 - 711 FtsK_SpoIIIE PF01580.13 205 0.0014 11.4 0.0 1 1 1.9e-05 0.0027 10.5 0.0 35 62 190 217 185 227 0.87 # 19639 # 21771 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.433 4_5 - 188 MTS PF05175.9 170 1.8e-09 30.6 0.0 1 1 1.8e-11 2.5e-09 30.1 0.0 24 140 43 148 38 169 0.80 # 823 # 1386 # -1 # ID=4_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.599 4_14 - 259 Cons_hypoth95 PF03602.10 183 8.9e-06 18.5 0.0 1 2 0.00018 0.025 7.3 0.0 113 169 44 102 31 110 0.71 # 7764 # 8540 # -1 # ID=4_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=3-4bp;gc_cont=0.611 4_14 - 259 Cons_hypoth95 PF03602.10 183 8.9e-06 18.5 0.0 2 2 4.6e-05 0.0064 9.2 0.0 23 60 177 213 168 250 0.72 # 7764 # 8540 # -1 # ID=4_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=3-4bp;gc_cont=0.611 4_15 - 680 AAA_19 PF13245.1 76 5.8e-11 35.4 0.1 1 1 1.8e-12 1.2e-10 34.4 0.1 14 75 21 86 11 87 0.87 # 9634 # 11673 # -1 # ID=4_15;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.505 1_23 - 1724 AAA_19 PF13245.1 76 2.1e-07 24.1 1.0 1 1 3e-09 2.1e-07 24.1 1.0 7 76 1011 1074 1005 1074 0.82 # 21773 # 26944 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.498 3_12 - 258 NAD_binding_10 PF13460.1 183 5.1e-05 16.7 1.6 1 1 3.9e-06 0.00055 13.3 1.6 2 178 11 231 10 236 0.51 # 8483 # 9256 # -1 # ID=3_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.540 1_11 - 874 AAA_10 PF12846.2 304 1.7e-43 142.5 0.1 1 1 6e-45 2.8e-43 141.8 0.1 1 294 483 769 483 773 0.90 # 6314 # 8935 # 1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.406 1_22 - 711 AAA_10 PF12846.2 304 2.8e-12 40.0 0.0 1 1 2e-13 9.3e-12 38.3 0.0 3 295 195 502 194 508 0.71 # 19639 # 21771 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.433 2_9 - 131 AAA_10 PF12846.2 304 2.1e-05 17.4 0.0 1 1 1.7e-06 8e-05 15.5 0.0 236 264 7 37 2 45 0.87 # 6933 # 7325 # -1 # ID=2_9;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.560 2_12 - 190 NodS PF05401.6 201 0.001 11.8 0.0 1 2 0.054 7.5 -0.8 0.0 42 154 33 58 19 66 0.62 # 9213 # 9782 # 1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.675 2_12 - 190 NodS PF05401.6 201 0.001 11.8 0.0 2 2 2.7e-05 0.0037 10.0 0.0 26 70 99 143 85 171 0.83 # 9213 # 9782 # 1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.675 3_12 - 258 adh_short_C2 PF13561.1 241 2.8e-36 118.8 1.0 1 1 2.3e-38 3.2e-36 118.6 1.0 5 240 16 252 13 253 0.91 # 8483 # 9256 # -1 # ID=3_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.540 4_15 - 680 Viral_helicase1 PF01443.13 234 2.5e-11 36.9 0.0 1 3 3.8e-07 5.3e-05 16.2 0.0 2 60 21 78 20 86 0.84 # 9634 # 11673 # -1 # ID=4_15;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.505 4_15 - 680 Viral_helicase1 PF01443.13 234 2.5e-11 36.9 0.0 2 3 0.00011 0.016 8.1 0.0 62 118 209 263 186 343 0.73 # 9634 # 11673 # -1 # ID=4_15;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.505 4_15 - 680 Viral_helicase1 PF01443.13 234 2.5e-11 36.9 0.0 3 3 0.00053 0.073 5.9 0.0 213 232 572 606 528 608 0.62 # 9634 # 11673 # -1 # ID=4_15;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.505 3_10 - 323 DUF2075 PF09848.4 352 0.0011 11.4 0.0 1 1 1.1e-05 0.0016 10.8 0.0 2 96 41 137 40 175 0.71 # 6053 # 7021 # 1 # ID=3_10;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.539 3_12 - 258 Epimerase PF01370.16 236 9.8e-05 15.2 0.2 1 1 2.5e-06 0.00034 13.4 0.2 2 227 11 238 10 248 0.69 # 8483 # 9256 # -1 # ID=3_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.540 1_22 - 711 TrwB_AAD_bind PF10412.4 386 8.2e-138 452.5 0.0 1 1 7.4e-140 1e-137 452.2 0.0 2 386 180 570 179 570 0.99 # 19639 # 21771 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.433 4_15 - 680 AAA_11 PF13086.1 236 7.7e-05 15.7 0.1 1 2 2.1e-05 0.0015 11.5 0.0 17 72 17 67 4 147 0.73 # 9634 # 11673 # -1 # ID=4_15;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.505 4_15 - 680 AAA_11 PF13086.1 236 7.7e-05 15.7 0.1 2 2 0.034 2.3 1.0 0.0 24 75 307 359 287 381 0.71 # 9634 # 11673 # -1 # ID=4_15;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.505 1_23 - 1724 AAA_11 PF13086.1 236 0.00064 12.7 6.5 1 3 0.0033 0.23 4.3 0.0 2 68 999 1059 998 1090 0.70 # 21773 # 26944 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.498 1_23 - 1724 AAA_11 PF13086.1 236 0.00064 12.7 6.5 2 3 0.00043 0.03 7.2 0.0 192 231 1090 1132 1066 1134 0.75 # 21773 # 26944 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.498 1_23 - 1724 AAA_11 PF13086.1 236 0.00064 12.7 6.5 3 3 0.043 3 0.7 1.9 98 157 1639 1705 1549 1719 0.66 # 21773 # 26944 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.498 1_22 - 711 T4SS-DNA_transf PF02534.9 469 7.1e-13 41.2 0.0 1 2 0.00036 0.049 5.4 0.0 123 178 263 316 241 354 0.82 # 19639 # 21771 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.433 1_22 - 711 T4SS-DNA_transf PF02534.9 469 7.1e-13 41.2 0.0 2 2 1e-12 1.4e-10 33.6 0.0 298 390 422 513 390 566 0.82 # 19639 # 21771 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.433 4_5 - 188 TIGR00755 TIGR00755 256 9.1e-07 21.4 0.0 1 1 8.8e-09 1.2e-06 21.0 0.0 8 105 29 123 25 128 0.88 # 823 # 1386 # -1 # ID=4_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.599 1_22 - 711 ArgK PF03308.11 267 0.00041 12.5 0.0 1 1 7.3e-06 0.001 11.2 0.0 32 62 196 226 185 229 0.87 # 19639 # 21771 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.433 5_6 - 573 tRNA-synt_His PF13393.1 311 0.00075 11.9 0.7 1 2 0.036 5 -0.6 0.1 193 257 208 269 191 279 0.55 # 2340 # 4058 # -1 # ID=5_6;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.372 5_6 - 573 tRNA-synt_His PF13393.1 311 0.00075 11.9 0.7 2 2 2.5e-05 0.0035 9.7 0.0 47 84 459 500 446 509 0.77 # 2340 # 4058 # -1 # ID=5_6;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.372 3_10 - 323 PIF1 PF05970.9 364 2.4e-05 16.8 0.0 1 1 3.4e-07 4.7e-05 15.8 0.0 7 126 27 148 23 166 0.73 # 6053 # 7021 # 1 # ID=3_10;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.539 12_2 - 256 PB1 PF00564.19 84 0.00015 14.8 0.1 1 2 0.0063 0.87 2.7 0.0 11 40 8 40 2 49 0.79 # 158 # 925 # 1 # ID=12_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.398 12_2 - 256 PB1 PF00564.19 84 0.00015 14.8 0.1 2 2 5.5e-05 0.0076 9.3 0.0 32 57 179 202 168 203 0.82 # 158 # 925 # 1 # ID=12_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.398 4_15 - 680 Herpes_ori_bp PF02399.10 824 0.00049 11.4 0.0 1 1 7.3e-06 0.001 10.4 0.0 52 109 20 83 9 102 0.80 # 9634 # 11673 # -1 # ID=4_15;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.505 4_15 - 680 UvrD-helicase PF00580.16 315 4.1e-39 128.0 0.2 1 1 3.5e-40 4.8e-38 124.5 0.2 2 307 6 260 5 266 0.90 # 9634 # 11673 # -1 # ID=4_15;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.505 4_14 - 259 Methyltransf_15 PF09445.5 164 0.00067 12.6 0.0 1 2 0.011 1.6 1.6 0.0 50 80 26 55 19 64 0.86 # 7764 # 8540 # -1 # ID=4_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=3-4bp;gc_cont=0.611 4_14 - 259 Methyltransf_15 PF09445.5 164 0.00067 12.6 0.0 2 2 8.1e-05 0.011 8.6 0.0 3 30 198 225 196 238 0.90 # 7764 # 8540 # -1 # ID=4_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=3-4bp;gc_cont=0.611 3_10 - 323 AAA_5 PF07728.9 139 0.00081 12.5 0.1 1 1 2.3e-05 0.0032 10.6 0.2 5 90 46 149 43 154 0.90 # 6053 # 7021 # 1 # ID=3_10;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.539 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/6a9e728f-ea8c-404d-b606-5b3b1363a3b8 # Target file: checkm_output/bins/pm710/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm710/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/6a9e728f-ea8c-404d-b606-5b3b1363a3b8 checkm_output/bins/pm710/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 17:08:55 2020 # [ok]