# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 2_20 - 488 Mg_chelatase PF01078.16 207 0.0011 12.0 0.1 1 1 1.1e-05 0.0022 11.0 0.1 1 47 215 267 215 281 0.79 # 9906 # 11369 # -1 # ID=2_20;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.512 2_51 - 372 ATP_bind_3 PF01171.15 182 0.00029 14.2 0.0 1 2 5.2e-05 0.01 9.2 0.0 1 59 52 110 52 129 0.78 # 27024 # 28139 # 1 # ID=2_51;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.520 2_51 - 372 ATP_bind_3 PF01171.15 182 0.00029 14.2 0.0 2 2 0.005 0.97 2.7 0.0 134 161 232 260 207 262 0.72 # 27024 # 28139 # 1 # ID=2_51;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.520 3_4 - 347 Seryl_tRNA_N PF02403.17 108 0.005 10.7 43.9 1 4 0.0023 0.44 4.5 9.9 39 98 89 152 80 158 0.79 # 1857 # 2897 # 1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.514 3_4 - 347 Seryl_tRNA_N PF02403.17 108 0.005 10.7 43.9 2 4 0.0003 0.057 7.3 4.4 48 99 144 195 143 199 0.94 # 1857 # 2897 # 1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.514 3_4 - 347 Seryl_tRNA_N PF02403.17 108 0.005 10.7 43.9 3 4 2.9e-06 0.00057 13.8 10.7 20 100 217 294 201 297 0.85 # 1857 # 2897 # 1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.514 3_4 - 347 Seryl_tRNA_N PF02403.17 108 0.005 10.7 43.9 4 4 0.00064 0.12 6.2 1.0 67 105 289 327 286 329 0.91 # 1857 # 2897 # 1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.514 1_101 - 262 MipZ PF09140.6 261 3.5e-10 33.2 0.0 1 2 6.6e-10 1.3e-07 24.8 0.0 2 52 4 55 3 81 0.83 # 85185 # 85970 # -1 # ID=1_101;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.534 1_101 - 262 MipZ PF09140.6 261 3.5e-10 33.2 0.0 2 2 0.00031 0.061 6.2 0.0 89 122 117 150 89 166 0.74 # 85185 # 85970 # -1 # ID=1_101;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.534 1_46 - 176 SSB PF00436.20 104 2.4e-41 133.7 0.3 1 1 1.5e-43 3e-41 133.4 0.3 1 104 5 109 5 109 0.99 # 37325 # 37852 # -1 # ID=1_46;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.544 3_6 - 504 UvrD_C_2 PF13538.1 104 1.5e-10 35.1 0.0 1 1 3.5e-12 6.7e-10 32.9 0.0 46 99 393 463 352 467 0.67 # 3184 # 4695 # 1 # ID=3_6;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.509 2_20 - 488 AAA_2 PF07724.9 171 6.8e-06 19.9 0.0 1 1 1.9e-07 3.8e-05 17.5 0.0 6 92 245 325 240 333 0.90 # 9906 # 11369 # -1 # ID=2_20;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.512 1_77 - 622 DUF87 PF01935.12 229 1.4e-08 28.6 0.1 1 1 3.3e-10 3.2e-08 27.5 0.1 24 63 173 211 168 379 0.87 # 66114 # 67979 # -1 # ID=1_77;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.542 1_61 - 816 DUF87 PF01935.12 229 5.2e-08 26.8 0.2 1 1 1.1e-09 1.1e-07 25.7 0.2 24 167 452 591 432 654 0.69 # 49461 # 51908 # -1 # ID=1_61;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.525 3_6 - 504 AAA_22 PF13401.1 131 0.00013 16.0 0.0 1 2 0.00014 0.0068 10.4 0.0 7 32 22 47 16 125 0.66 # 3184 # 4695 # 1 # ID=3_6;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.509 3_6 - 504 AAA_22 PF13401.1 131 0.00013 16.0 0.0 2 2 0.03 1.5 2.9 0.0 82 124 189 225 157 229 0.76 # 3184 # 4695 # 1 # ID=3_6;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.509 1_77 - 622 AAA_22 PF13401.1 131 0.00024 15.1 0.0 1 1 1.7e-05 0.0008 13.4 0.0 3 68 171 231 166 287 0.83 # 66114 # 67979 # -1 # ID=1_77;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.542 2_20 - 488 AAA_22 PF13401.1 131 0.00092 13.2 1.1 1 1 0.0012 0.057 7.4 0.8 69 121 283 344 243 354 0.66 # 9906 # 11369 # -1 # ID=2_20;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.512 1_49 - 100 AAA_22 PF13401.1 131 0.0014 12.6 0.5 1 1 4.6e-05 0.0022 12.0 0.5 5 24 62 81 50 86 0.86 # 39504 # 39803 # -1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.530 1_29 - 542 DNA_methylase PF00145.12 335 1.2e-28 94.0 0.0 1 1 6.3e-30 6.1e-28 91.7 0.0 3 333 126 441 124 443 0.77 # 24307 # 25932 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.515 1_90 - 476 DNA_methylase PF00145.12 335 2e-10 34.1 0.0 1 2 4.1e-11 4e-09 29.8 0.0 71 160 228 320 199 324 0.83 # 78381 # 79808 # -1 # ID=1_90;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.533 1_90 - 476 DNA_methylase PF00145.12 335 2e-10 34.1 0.0 2 2 0.011 1.1 2.1 0.0 290 330 407 448 343 452 0.74 # 78381 # 79808 # -1 # ID=1_90;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.533 2_4 - 415 N6_N4_Mtase PF01555.13 231 1.1e-24 81.0 0.0 1 1 1.8e-26 1.8e-24 80.3 0.0 1 228 129 389 129 392 0.81 # 1800 # 3044 # -1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.529 1_38 - 295 N6_N4_Mtase PF01555.13 231 7.7e-09 29.2 0.1 1 2 3.4e-06 0.00033 14.0 0.0 180 223 28 72 4 76 0.84 # 29060 # 29944 # -1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.511 1_38 - 295 N6_N4_Mtase PF01555.13 231 7.7e-09 29.2 0.1 2 2 7e-06 0.00068 13.0 0.1 2 172 90 267 89 283 0.72 # 29060 # 29944 # -1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.511 2_20 - 488 AAA_17 PF13207.1 121 0.00024 15.8 0.0 1 1 6.3e-06 0.0012 13.5 0.0 2 63 245 299 245 388 0.63 # 9906 # 11369 # -1 # ID=2_20;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.512 5_2 - 370 ADH_zinc_N_2 PF13602.1 127 1.7e-05 19.5 0.0 1 1 2.1e-07 4e-05 18.4 0.0 2 121 231 362 230 363 0.63 # 565 # 1674 # -1 # ID=5_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.566 1_77 - 622 MobB PF03205.9 140 0.001 12.6 0.0 1 1 1.7e-05 0.0034 10.9 0.0 4 34 176 206 175 214 0.90 # 66114 # 67979 # -1 # ID=1_77;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.542 5_2 - 370 ADH_zinc_N PF00107.21 130 2.5e-23 75.9 0.2 1 1 2e-25 3.9e-23 75.3 0.2 1 128 197 330 197 332 0.90 # 565 # 1674 # -1 # ID=5_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.566 1_101 - 262 ArsA_ATPase PF02374.10 305 1.1e-05 18.4 0.0 1 2 3e-07 5.8e-05 16.0 0.0 7 40 9 43 2 79 0.84 # 85185 # 85970 # -1 # ID=1_101;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.534 1_101 - 262 ArsA_ATPase PF02374.10 305 1.1e-05 18.4 0.0 2 2 0.029 5.6 -0.3 0.0 124 136 124 136 106 143 0.79 # 85185 # 85970 # -1 # ID=1_101;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.534 3_6 - 504 PhoH PF02562.11 205 1.2e-05 18.4 0.3 1 2 0.001 0.19 4.7 0.0 21 45 21 45 5 61 0.77 # 3184 # 4695 # 1 # ID=3_6;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.509 3_6 - 504 PhoH PF02562.11 205 1.2e-05 18.4 0.3 2 2 2.3e-05 0.0044 10.1 0.0 122 168 196 240 193 255 0.83 # 3184 # 4695 # 1 # ID=3_6;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.509 1_49 - 100 T2SE PF00437.15 272 2.4e-05 17.1 0.0 1 1 2.6e-07 2.5e-05 17.1 0.0 103 143 38 76 6 85 0.77 # 39504 # 39803 # -1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.530 1_77 - 622 T2SE PF00437.15 272 0.00036 13.3 0.0 1 1 5.9e-06 0.00057 12.6 0.0 116 162 163 206 124 227 0.78 # 66114 # 67979 # -1 # ID=1_77;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.542 2_20 - 488 Zeta_toxin PF06414.7 201 0.00032 13.6 0.0 1 1 3.1e-06 0.00061 12.7 0.0 18 52 244 277 239 314 0.90 # 9906 # 11369 # -1 # ID=2_20;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.512 2_51 - 372 TIGR02432 TIGR02432 189 7.8e-05 16.2 0.1 1 2 1.1e-05 0.0021 11.5 0.0 1 58 52 109 52 119 0.85 # 27024 # 28139 # 1 # ID=2_51;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.520 2_51 - 372 TIGR02432 TIGR02432 189 7.8e-05 16.2 0.1 2 2 0.0084 1.6 2.1 0.0 140 165 235 260 207 262 0.76 # 27024 # 28139 # 1 # ID=2_51;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.520 1_49 - 100 Arch_ATPase PF01637.13 234 4.4e-05 17.1 0.0 1 1 2.9e-07 5.6e-05 16.7 0.0 4 41 45 82 43 91 0.92 # 39504 # 39803 # -1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.530 1_49 - 100 AAA_16 PF13191.1 185 3.4e-05 17.7 0.0 1 1 6.2e-07 4e-05 17.5 0.0 5 44 45 81 41 86 0.80 # 39504 # 39803 # -1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.530 1_61 - 816 AAA_16 PF13191.1 185 5.8e-05 17.0 0.2 1 1 4.8e-06 0.00031 14.6 0.2 20 62 447 489 439 648 0.64 # 49461 # 51908 # -1 # ID=1_61;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.525 1_86 - 206 AAA_16 PF13191.1 185 8.2e-05 16.5 0.1 1 1 1.9e-06 0.00012 15.9 0.1 27 68 11 54 3 168 0.79 # 76590 # 77207 # -1 # ID=1_86;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.513 3_4 - 347 AAA_13 PF13166.1 712 0.023 6.9 35.0 1 2 0.0025 0.48 2.6 10.5 400 479 91 169 40 180 0.53 # 1857 # 2897 # 1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.514 3_4 - 347 AAA_13 PF13166.1 712 0.023 6.9 35.0 2 2 0.0041 0.8 1.8 34.8 286 464 123 294 76 343 0.50 # 1857 # 2897 # 1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.514 1_101 - 262 CbiA PF01656.18 195 2.3e-30 99.3 0.0 1 1 3e-32 2.9e-30 98.9 0.0 1 170 5 205 5 229 0.77 # 85185 # 85970 # -1 # ID=1_101;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.534 1_61 - 816 CbiA PF01656.18 195 0.00075 12.8 0.0 1 1 1.7e-05 0.0016 11.7 0.0 3 49 455 517 454 593 0.60 # 49461 # 51908 # -1 # ID=1_61;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.525 3_6 - 504 AAA_14 PF13173.1 128 7.7e-05 16.4 1.5 1 2 3.3e-05 0.0063 10.3 0.1 12 46 29 62 19 155 0.78 # 3184 # 4695 # 1 # ID=3_6;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.509 3_6 - 504 AAA_14 PF13173.1 128 7.7e-05 16.4 1.5 2 2 0.0024 0.46 4.2 0.0 50 97 175 225 129 235 0.69 # 3184 # 4695 # 1 # ID=3_6;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.509 1_49 - 100 AAA_29 PF13555.1 62 0.00051 13.4 0.3 1 1 4e-06 0.00078 12.8 0.3 21 38 59 76 52 86 0.87 # 39504 # 39803 # -1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.530 2_20 - 488 AAA PF00004.24 132 4.1e-29 95.3 0.0 1 1 9.1e-31 1.8e-28 93.3 0.0 1 131 245 371 245 372 0.97 # 9906 # 11369 # -1 # ID=2_20;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.512 3_6 - 504 UvrD_C PF13361.1 351 1.8e-10 34.6 0.0 1 1 1.7e-12 3.3e-10 33.7 0.0 238 347 359 468 334 472 0.76 # 3184 # 4695 # 1 # ID=3_6;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.509 1_4 - 100 Thi4 PF01946.12 230 0.0003 13.7 0.1 1 1 1.7e-06 0.00033 13.6 0.1 164 226 16 77 4 81 0.87 # 2547 # 2846 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.493 2_51 - 372 PAPS_reduct PF01507.14 174 6.8e-12 39.4 0.4 1 2 0.028 2.7 1.6 0.0 2 17 53 68 52 91 0.76 # 27024 # 28139 # 1 # ID=2_51;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.520 2_51 - 372 PAPS_reduct PF01507.14 174 6.8e-12 39.4 0.4 2 2 8.8e-13 8.5e-11 35.8 0.1 58 172 154 279 145 281 0.85 # 27024 # 28139 # 1 # ID=2_51;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.520 1_25 - 818 PAPS_reduct PF01507.14 174 1.3e-05 18.9 0.0 1 1 8.4e-07 8.1e-05 16.3 0.0 3 152 69 257 67 264 0.72 # 20030 # 22483 # -1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.524 1_98 - 212 N6_Mtase PF02384.11 311 7.1e-07 22.3 0.0 1 1 5.9e-09 1.1e-06 21.7 0.0 3 97 71 166 69 201 0.72 # 82991 # 83626 # 1 # ID=1_98;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.522 4_4 - 609 TraG-D_C PF12696.2 128 3.1e-32 105.0 0.0 1 1 7.4e-34 4.7e-32 104.4 0.0 1 127 401 522 401 523 0.87 # 3968 # 5794 # 1 # ID=4_4;partial=01;start_type=TTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.637 1_77 - 622 TraG-D_C PF12696.2 128 5.5e-15 49.2 0.0 1 1 1.5e-16 9.9e-15 48.4 0.0 1 124 471 595 471 599 0.83 # 66114 # 67979 # -1 # ID=1_77;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.542 1_61 - 816 TraG-D_C PF12696.2 128 1.7e-06 21.8 0.0 1 1 6e-08 3.9e-06 20.6 0.0 17 75 674 728 656 734 0.84 # 49461 # 51908 # -1 # ID=1_61;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.525 1_101 - 262 AAA_31 PF13614.1 157 2.5e-10 34.3 0.0 1 1 2.6e-12 5.1e-10 33.3 0.0 1 149 3 157 3 165 0.79 # 85185 # 85970 # -1 # ID=1_101;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.534 2_20 - 488 AAA_33 PF13671.1 143 0.00053 13.7 0.0 1 1 1.6e-05 0.0016 12.2 0.0 2 33 245 297 245 399 0.73 # 9906 # 11369 # -1 # ID=2_20;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.512 1_46 - 176 AAA_33 PF13671.1 143 0.0011 12.7 0.0 1 1 1.7e-05 0.0017 12.1 0.0 26 102 33 104 23 109 0.75 # 37325 # 37852 # -1 # ID=1_46;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.544 2_4 - 415 Methyltransf_26 PF13659.1 117 0.00012 16.0 0.0 1 2 6.1e-06 0.0012 12.8 0.0 68 116 126 180 47 181 0.83 # 1800 # 3044 # -1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.529 2_4 - 415 Methyltransf_26 PF13659.1 117 0.00012 16.0 0.0 2 2 0.04 7.7 0.4 0.0 1 31 352 381 352 395 0.71 # 1800 # 3044 # -1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.529 5_2 - 370 2-Hacid_dh_C PF02826.14 178 0.00096 12.2 0.1 1 1 9.6e-06 0.0019 11.2 0.1 34 76 185 228 173 240 0.82 # 565 # 1674 # -1 # ID=5_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.566 3_6 - 504 AAA_30 PF13604.1 196 1.3e-07 25.2 0.1 1 2 8.6e-07 0.00017 15.1 0.1 18 80 19 81 11 109 0.77 # 3184 # 4695 # 1 # ID=3_6;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.509 3_6 - 504 AAA_30 PF13604.1 196 1.3e-07 25.2 0.1 2 2 0.00025 0.048 7.0 0.0 115 133 211 229 174 278 0.75 # 3184 # 4695 # 1 # ID=3_6;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.509 1_77 - 622 FtsK_SpoIIIE PF01580.13 205 1.6e-07 24.8 0.0 1 2 3.8e-08 2.5e-06 20.9 0.0 36 81 168 211 136 234 0.79 # 66114 # 67979 # -1 # ID=1_77;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.542 1_77 - 622 FtsK_SpoIIIE PF01580.13 205 1.6e-07 24.8 0.0 2 2 0.042 2.7 1.2 0.0 176 204 481 509 472 510 0.86 # 66114 # 67979 # -1 # ID=1_77;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.542 1_61 - 816 FtsK_SpoIIIE PF01580.13 205 1.6e-06 21.6 0.1 1 1 6.6e-08 4.3e-06 20.2 0.1 33 84 446 495 401 698 0.67 # 49461 # 51908 # -1 # ID=1_61;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.525 1_86 - 206 FtsK_SpoIIIE PF01580.13 205 0.0014 11.9 0.2 1 1 7.1e-05 0.0045 10.3 0.0 34 53 4 23 1 28 0.83 # 76590 # 77207 # -1 # ID=1_86;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.513 5_2 - 370 Met_10 PF02475.11 200 0.00016 15.2 0.0 1 1 1.4e-06 0.00027 14.4 0.0 98 143 183 229 178 305 0.81 # 565 # 1674 # -1 # ID=5_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.566 3_6 - 504 AAA_19 PF13245.1 76 3.6e-09 30.2 0.0 1 1 9.9e-11 9.6e-09 28.8 0.0 8 75 18 77 12 78 0.86 # 3184 # 4695 # 1 # ID=3_6;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.509 1_49 - 100 AAA_19 PF13245.1 76 0.00074 13.1 0.3 1 1 1.1e-05 0.001 12.6 0.3 10 30 61 81 51 84 0.69 # 39504 # 39803 # -1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.530 1_61 - 816 AAA_10 PF12846.2 304 5.2e-59 193.9 0.1 1 1 9e-61 8.7e-59 193.2 0.1 1 296 451 729 451 738 0.93 # 49461 # 51908 # -1 # ID=1_61;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.525 1_77 - 622 AAA_10 PF12846.2 304 1.8e-18 60.8 0.2 1 1 5.3e-20 5.1e-18 59.3 0.2 2 299 173 549 172 553 0.71 # 66114 # 67979 # -1 # ID=1_77;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.542 3_6 - 504 ResIII PF04851.10 184 3.7e-06 20.7 0.0 1 1 1.1e-07 1e-05 19.2 0.0 23 75 17 69 6 106 0.79 # 3184 # 4695 # 1 # ID=3_6;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.509 1_77 - 622 ResIII PF04851.10 184 0.0002 15.0 0.0 1 1 4.2e-06 0.00041 14.0 0.0 23 57 170 206 129 214 0.74 # 66114 # 67979 # -1 # ID=1_77;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.542 3_4 - 347 DUF3584 PF12128.3 1201 0.026 5.6 54.0 1 2 0.0024 0.47 1.4 26.2 415 541 84 214 76 221 0.70 # 1857 # 2897 # 1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.514 3_4 - 347 DUF3584 PF12128.3 1201 0.026 5.6 54.0 2 2 8.2e-06 0.0016 9.6 20.4 613 716 225 327 216 345 0.79 # 1857 # 2897 # 1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.514 3_6 - 504 Viral_helicase1 PF01443.13 234 1.9e-10 34.4 0.0 1 3 1.4e-05 0.0027 11.0 0.0 2 49 23 73 22 87 0.67 # 3184 # 4695 # 1 # ID=3_6;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.509 3_6 - 504 Viral_helicase1 PF01443.13 234 1.9e-10 34.4 0.0 2 3 2.1e-05 0.004 10.5 0.0 56 105 188 234 147 256 0.78 # 3184 # 4695 # 1 # ID=3_6;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.509 3_6 - 504 Viral_helicase1 PF01443.13 234 1.9e-10 34.4 0.0 3 3 5.2e-05 0.01 9.2 0.0 176 227 404 462 344 467 0.75 # 3184 # 4695 # 1 # ID=3_6;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.509 1_77 - 622 DEAD PF00270.24 169 4.5e-05 16.8 0.0 1 1 8.7e-07 8.4e-05 15.9 0.0 13 52 171 208 159 231 0.85 # 66114 # 67979 # -1 # ID=1_77;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.542 1_49 - 100 DEAD PF00270.24 169 0.002 11.4 0.1 1 1 2.6e-05 0.0025 11.2 0.1 14 29 60 76 46 87 0.75 # 39504 # 39803 # -1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.530 2_20 - 488 DUF815 PF05673.8 250 3e-06 20.1 0.0 1 1 5e-08 9.6e-06 18.5 0.0 19 154 208 353 194 365 0.75 # 9906 # 11369 # -1 # ID=2_20;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.512 1_77 - 622 DUF853 PF05872.7 504 1.6e-06 20.5 0.0 1 1 1.4e-08 2.6e-06 19.8 0.0 7 60 158 211 153 225 0.93 # 66114 # 67979 # -1 # ID=1_77;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.542 4_4 - 609 TrwB_AAD_bind PF10412.4 386 1.4e-30 100.0 0.0 1 1 6.9e-32 4.4e-30 98.3 0.0 44 381 171 537 140 542 0.83 # 3968 # 5794 # 1 # ID=4_4;partial=01;start_type=TTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.637 1_77 - 622 TrwB_AAD_bind PF10412.4 386 3.8e-19 62.3 0.0 1 2 1.3e-12 8.6e-11 34.8 0.0 10 54 167 211 161 313 0.70 # 66114 # 67979 # -1 # ID=1_77;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.542 1_77 - 622 TrwB_AAD_bind PF10412.4 386 3.8e-19 62.3 0.0 2 2 1e-09 6.7e-08 25.3 0.0 242 377 469 609 445 616 0.82 # 66114 # 67979 # -1 # ID=1_77;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.542 1_61 - 816 TrwB_AAD_bind PF10412.4 386 4.3e-08 25.9 0.0 1 2 2.2e-05 0.0014 11.1 0.0 6 72 442 517 438 520 0.85 # 49461 # 51908 # -1 # ID=1_61;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.525 1_61 - 816 TrwB_AAD_bind PF10412.4 386 4.3e-08 25.9 0.0 2 2 8.4e-06 0.00054 12.4 0.1 232 301 643 712 613 731 0.66 # 49461 # 51908 # -1 # ID=1_61;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.525 3_6 - 504 AAA_11 PF13086.1 236 4.5e-07 23.5 0.1 1 1 1.8e-08 3.5e-06 20.6 0.1 22 228 24 228 9 229 0.70 # 3184 # 4695 # 1 # ID=3_6;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.509 1_61 - 816 Guanylate_kin PF00625.16 183 0.00031 14.0 0.1 1 3 0.0039 0.74 3.0 0.0 3 26 452 475 450 503 0.86 # 49461 # 51908 # -1 # ID=1_61;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.525 1_61 - 816 Guanylate_kin PF00625.16 183 0.00031 14.0 0.1 2 3 0.012 2.3 1.4 0.0 76 115 597 637 591 703 0.82 # 49461 # 51908 # -1 # ID=1_61;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.525 1_61 - 816 Guanylate_kin PF00625.16 183 0.00031 14.0 0.1 3 3 0.001 0.2 4.9 0.0 75 131 714 770 697 777 0.87 # 49461 # 51908 # -1 # ID=1_61;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.525 4_4 - 609 T4SS-DNA_transf PF02534.9 469 1.4e-104 344.1 0.0 1 1 1.7e-106 1.7e-104 343.8 0.0 1 460 111 557 111 566 0.90 # 3968 # 5794 # 1 # ID=4_4;partial=01;start_type=TTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.637 1_77 - 622 T4SS-DNA_transf PF02534.9 469 5e-05 15.8 0.0 1 1 1.1e-06 0.00011 14.7 0.0 37 114 168 248 125 346 0.72 # 66114 # 67979 # -1 # ID=1_77;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.542 1_77 - 622 ArgK PF03308.11 267 0.00021 13.9 0.0 1 1 1.8e-06 0.00036 13.2 0.0 12 68 158 209 153 214 0.88 # 66114 # 67979 # -1 # ID=1_77;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.542 2_51 - 372 tRNA_Me_trans PF03054.11 356 7.3e-05 15.2 0.0 1 2 1.1e-06 0.00022 13.6 0.0 2 71 52 122 51 144 0.74 # 27024 # 28139 # 1 # ID=2_51;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.520 2_51 - 372 tRNA_Me_trans PF03054.11 356 7.3e-05 15.2 0.0 2 2 0.042 8 -1.4 0.0 193 224 274 305 236 311 0.83 # 27024 # 28139 # 1 # ID=2_51;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.520 5_2 - 370 TrkA_N PF02254.13 116 0.00014 15.7 0.0 1 1 1.3e-06 0.00025 14.9 0.0 1 45 190 236 190 246 0.83 # 565 # 1674 # -1 # ID=5_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.566 3_6 - 504 UvrD-helicase PF00580.16 315 5.4e-17 55.8 4.2 1 2 9.7e-07 0.00019 14.6 0.1 2 38 8 44 7 64 0.85 # 3184 # 4695 # 1 # ID=3_6;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.509 3_6 - 504 UvrD-helicase PF00580.16 315 5.4e-17 55.8 4.2 2 2 5.4e-15 1e-12 41.7 0.2 241 305 166 239 72 245 0.78 # 3184 # 4695 # 1 # ID=3_6;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.509 2_20 - 488 AAA_25 PF13481.1 194 0.00012 15.3 3.6 1 3 0.049 2.4 1.3 1.4 36 55 245 264 224 275 0.81 # 9906 # 11369 # -1 # ID=2_20;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.512 2_20 - 488 AAA_25 PF13481.1 194 0.00012 15.3 3.6 2 3 0.00014 0.0068 9.6 0.0 127 176 287 336 270 348 0.69 # 9906 # 11369 # -1 # ID=2_20;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.512 2_20 - 488 AAA_25 PF13481.1 194 0.00012 15.3 3.6 3 3 0.017 0.8 2.9 0.0 69 172 337 440 325 448 0.66 # 9906 # 11369 # -1 # ID=2_20;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.512 1_61 - 816 AAA_25 PF13481.1 194 0.00067 12.9 0.0 1 1 3.4e-05 0.0016 11.6 0.0 36 86 454 494 447 532 0.82 # 49461 # 51908 # -1 # ID=1_61;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.525 1_101 - 262 AAA_25 PF13481.1 194 0.00075 12.7 0.0 1 1 2.4e-05 0.0012 12.1 0.0 42 91 12 51 11 134 0.78 # 85185 # 85970 # -1 # ID=1_101;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.534 1_77 - 622 AAA_25 PF13481.1 194 0.00075 12.7 0.0 1 1 4.9e-05 0.0024 11.1 0.0 20 137 159 265 145 272 0.78 # 66114 # 67979 # -1 # ID=1_77;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.542 1_48 - 226 AAA_5 PF07728.9 139 6.9e-10 32.6 0.0 1 1 5.8e-12 1.1e-09 32.0 0.0 52 125 23 91 1 100 0.87 # 38836 # 39513 # -1 # ID=1_48;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.541 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/6231e883-f0c9-4ef9-a68d-9b85e15c8047 # Target file: checkm_output/bins/pm709/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm709/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/6231e883-f0c9-4ef9-a68d-9b85e15c8047 checkm_output/bins/pm709/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 17:08:54 2020 # [ok]