# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_14 - 274 AAA_13 PF13166.1 712 0.011 4.5 22.1 1 2 0.00037 0.0063 5.3 4.7 406 458 37 89 14 98 0.53 # 9459 # 10280 # 1 # ID=1_14;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.461 1_14 - 274 AAA_13 PF13166.1 712 0.011 4.5 22.1 2 2 0.0004 0.0067 5.2 9.2 82 158 110 170 93 203 0.50 # 9459 # 10280 # 1 # ID=1_14;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.461 1_17 - 522 KaiC PF06745.8 227 2.5e-05 13.9 0.0 1 1 3e-06 5e-05 12.8 0.0 18 53 256 291 252 294 0.93 # 12262 # 13827 # 1 # ID=1_17;partial=01;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.614 1_17 - 522 FtsK_SpoIIIE PF01580.13 205 0.00014 11.8 0.0 1 1 1.8e-05 0.0003 10.7 0.0 14 59 231 279 220 282 0.78 # 12262 # 13827 # 1 # ID=1_17;partial=01;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.614 1_17 - 522 AAA_19 PF13245.1 76 0.00015 12.0 0.0 1 1 2.7e-05 0.00047 10.4 0.0 15 53 262 297 255 303 0.80 # 12262 # 13827 # 1 # ID=1_17;partial=01;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.614 1_17 - 522 AAA_10 PF12846.2 304 3.1e-14 43.4 0.0 1 1 3.1e-14 5.2e-13 39.4 0.0 3 269 259 508 257 518 0.77 # 12262 # 13827 # 1 # ID=1_17;partial=01;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.614 1_14 - 274 DUF3584 PF12128.3 1201 0.0031 5.2 22.4 1 2 2.8e-05 0.00047 7.9 3.3 598 657 32 91 25 98 0.90 # 9459 # 10280 # 1 # ID=1_14;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.461 1_14 - 274 DUF3584 PF12128.3 1201 0.0031 5.2 22.4 2 2 0.0008 0.014 3.0 11.3 608 674 111 177 105 184 0.83 # 9459 # 10280 # 1 # ID=1_14;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.461 1_17 - 522 TrwB_AAD_bind PF10412.4 386 4e-06 16.0 0.0 1 1 3.7e-07 6.2e-06 15.3 0.0 14 57 256 300 247 313 0.85 # 12262 # 13827 # 1 # ID=1_17;partial=01;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.614 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/63ccfb5d-b6e4-40cc-af57-4f5eb3ab09e4 # Target file: checkm_output/bins/pm700/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm700/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/63ccfb5d-b6e4-40cc-af57-4f5eb3ab09e4 checkm_output/bins/pm700/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 17:08:47 2020 # [ok]