# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_25 - 354 UPF0020 PF01170.13 180 3.2e-05 15.6 0.2 1 2 3.3e-05 0.0018 9.9 0.0 89 116 12 38 1 52 0.68 # 15307 # 16368 # 1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.523 1_25 - 354 UPF0020 PF01170.13 180 3.2e-05 15.6 0.2 2 2 0.003 0.17 3.5 0.0 26 49 306 328 299 347 0.81 # 15307 # 16368 # 1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.523 1_25 - 354 Methyltransf_11 PF08241.7 95 0.00013 14.6 0.0 1 1 3.6e-05 0.002 10.7 0.0 69 95 53 79 1 79 0.67 # 15307 # 16368 # 1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.523 1_25 - 354 N6_N4_Mtase PF01555.13 231 6.1e-44 142.3 0.0 1 1 5e-45 2.8e-43 140.1 0.0 2 229 30 346 29 348 0.87 # 15307 # 16368 # 1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.523 1_36 - 570 Terminase_1 PF03354.10 477 1e-111 365.7 0.0 1 1 2.1e-113 1.2e-111 365.5 0.0 1 476 82 554 82 555 0.92 # 21392 # 23101 # 1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.501 1_25 - 354 Methyltransf_26 PF13659.1 117 1.4e-16 52.7 0.1 1 2 3e-13 1.7e-11 36.3 0.0 51 116 9 82 3 83 0.84 # 15307 # 16368 # 1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.523 1_25 - 354 Methyltransf_26 PF13659.1 117 1.4e-16 52.7 0.1 2 2 2.5e-06 0.00014 14.0 0.0 1 35 309 342 309 351 0.91 # 15307 # 16368 # 1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.523 1_25 - 354 MTS PF05175.9 170 0.00016 13.2 0.0 1 1 6.1e-06 0.00034 12.1 0.0 73 154 3 97 1 107 0.73 # 15307 # 16368 # 1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.523 1_10 - 1325 Herpes_ori_bp PF02399.10 824 1e-08 25.6 0.0 1 2 1.8e-08 1e-06 19.0 0.0 44 198 521 675 493 685 0.80 # 5128 # 9102 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.537 1_10 - 1325 Herpes_ori_bp PF02399.10 824 1e-08 25.6 0.0 2 2 0.00051 0.029 4.3 0.0 271 351 721 812 699 816 0.76 # 5128 # 9102 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.537 1_52 - 204 Lambda_tail_I PF06805.7 82 5.8e-18 56.7 0.0 1 1 1.5e-19 8.4e-18 56.2 0.0 4 82 10 92 7 92 0.97 # 35437 # 36048 # 1 # ID=1_52;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.474 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/cc31bd3a-9165-44cb-955c-ef951a80cf3f # Target file: checkm_output/bins/pm692/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm692/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/cc31bd3a-9165-44cb-955c-ef951a80cf3f checkm_output/bins/pm692/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 17:08:43 2020 # [ok]