# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_6 - 562 AAA_13 PF13166.1 712 0.069 1.8 21.5 1 2 0.001 0.018 3.8 4.6 406 458 325 377 302 386 0.53 # 6376 # 8061 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.517 1_6 - 562 AAA_13 PF13166.1 712 0.069 1.8 21.5 2 2 0.00098 0.017 3.9 8.8 83 158 399 458 382 495 0.50 # 6376 # 8061 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.517 1_10 - 450 KaiC PF06745.8 227 1.9e-05 14.2 0.0 1 1 2.5e-06 4.2e-05 13.1 0.0 18 53 51 86 47 89 0.93 # 10654 # 12003 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.635 1_10 - 450 TraG-D_C PF12696.2 128 4.8e-10 29.8 0.0 1 1 4.3e-11 7.3e-10 29.2 0.0 1 127 260 386 260 387 0.79 # 10654 # 12003 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.635 1_10 - 450 FtsK_SpoIIIE PF01580.13 205 6.9e-05 12.8 0.0 1 1 1.5e-05 0.00025 11.0 0.0 14 59 26 74 15 77 0.78 # 10654 # 12003 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.635 1_10 - 450 AAA_19 PF13245.1 76 0.00013 12.2 0.0 1 1 2.3e-05 0.00038 10.7 0.0 15 53 57 92 50 98 0.80 # 10654 # 12003 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.635 1_10 - 450 AAA_10 PF12846.2 304 1.7e-16 50.9 0.0 1 1 1.7e-16 2.9e-15 46.8 0.0 3 294 54 335 52 342 0.78 # 10654 # 12003 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.635 1_6 - 562 DUF3584 PF12128.3 1201 0.022 2.3 22.2 1 2 7.8e-05 0.0013 6.4 3.2 598 657 320 379 313 385 0.90 # 6376 # 8061 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.517 1_6 - 562 DUF3584 PF12128.3 1201 0.022 2.3 22.2 2 2 0.0027 0.045 1.3 11.3 608 673 399 464 394 471 0.82 # 6376 # 8061 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.517 1_10 - 450 TrwB_AAD_bind PF10412.4 386 5.8e-08 22.0 0.0 1 2 3e-07 5.1e-06 15.6 0.0 14 57 51 95 42 108 0.85 # 10654 # 12003 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.635 1_10 - 450 TrwB_AAD_bind PF10412.4 386 5.8e-08 22.0 0.0 2 2 0.00077 0.013 4.4 0.0 296 368 315 388 220 402 0.83 # 10654 # 12003 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.635 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/b447ddcb-2fdf-4d77-8270-d5cef04edf11 # Target file: checkm_output/bins/pm687/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm687/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/b447ddcb-2fdf-4d77-8270-d5cef04edf11 checkm_output/bins/pm687/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 17:08:37 2020 # [ok]