# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_25 - 234 UPF0020 PF01170.13 180 2.9e-06 19.6 0.0 1 2 0.00015 0.0042 9.3 0.0 103 120 17 34 5 80 0.83 # 22648 # 23349 # 1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.605 1_25 - 234 UPF0020 PF01170.13 180 2.9e-06 19.6 0.0 2 2 0.00028 0.0078 8.4 0.0 28 51 170 193 165 227 0.75 # 22648 # 23349 # 1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.605 1_37 - 188 UPF0020 PF01170.13 180 1e-05 17.8 0.0 1 1 2.2e-06 6e-05 15.3 0.0 19 54 41 78 39 138 0.74 # 30221 # 30784 # 1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.590 1_16 - 676 UPF0020 PF01170.13 180 0.00019 13.7 0.1 1 2 0.00032 0.0089 8.2 0.1 31 45 209 223 201 230 0.88 # 12093 # 14120 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.569 1_16 - 676 UPF0020 PF01170.13 180 0.00019 13.7 0.1 2 2 0.015 0.43 2.7 0.0 106 125 292 311 272 318 0.79 # 12093 # 14120 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.569 1_37 - 188 RrnaAD PF00398.15 262 2.1e-07 22.8 0.0 1 1 3.4e-09 2.8e-07 22.4 0.0 9 113 29 128 26 140 0.90 # 30221 # 30784 # 1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.590 1_18 - 209 MipZ PF09140.6 261 1.4e-21 69.3 0.5 1 2 1.2e-12 9.8e-11 33.8 0.0 2 53 2 52 1 60 0.89 # 15807 # 16433 # -1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.453 1_18 - 209 MipZ PF09140.6 261 1.4e-21 69.3 0.5 2 2 1.6e-12 1.3e-10 33.4 0.0 87 140 65 118 58 128 0.92 # 15807 # 16433 # -1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.453 1_18 - 209 YhjQ PF06564.7 244 1.9e-05 16.7 0.3 1 2 1.8e-06 0.00015 13.8 0.3 4 38 3 37 1 50 0.89 # 15807 # 16433 # -1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.453 1_18 - 209 YhjQ PF06564.7 244 1.9e-05 16.7 0.3 2 2 0.029 2.4 0.0 0.0 108 144 69 103 44 113 0.78 # 15807 # 16433 # -1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.453 1_37 - 188 Methyltransf_18 PF12847.2 112 8.4e-08 25.5 0.0 1 1 1.6e-09 1.3e-07 24.8 0.0 2 107 51 144 50 146 0.92 # 30221 # 30784 # 1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.590 1_14 - 1086 DEAD_2 PF06733.10 174 0.00073 11.6 0.2 1 1 2.3e-05 0.0019 10.3 0.0 122 156 412 444 404 454 0.86 # 8185 # 11442 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.553 1_18 - 209 SRP54 PF00448.17 196 2.1e-07 23.2 0.1 1 1 1.5e-08 1.2e-06 20.7 0.1 4 98 2 91 1 134 0.80 # 15807 # 16433 # -1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.453 1_25 - 234 N6_N4_Mtase PF01555.13 231 9.6e-33 106.2 0.0 1 2 6.8e-13 5.6e-11 34.9 0.0 1 113 21 130 21 137 0.85 # 22648 # 23349 # 1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.605 1_25 - 234 N6_N4_Mtase PF01555.13 231 9.6e-33 106.2 0.0 2 2 2e-23 1.7e-21 69.4 0.0 170 227 149 206 135 210 0.92 # 22648 # 23349 # 1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.605 1_18 - 209 AAA_17 PF13207.1 121 1.8e-05 18.2 0.0 1 1 4.2e-07 3.5e-05 17.3 0.0 9 77 11 84 9 205 0.76 # 15807 # 16433 # -1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.453 1_18 - 209 MobB PF03205.9 140 4.9e-05 15.7 0.1 1 1 1.6e-06 0.00013 14.3 0.0 10 42 11 41 1 46 0.79 # 15807 # 16433 # -1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.453 1_18 - 209 ArsA_ATPase PF02374.10 305 2.6e-08 25.8 0.4 1 2 1.2e-09 9.6e-08 24.0 0.1 3 48 3 48 1 69 0.85 # 15807 # 16433 # -1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.453 1_18 - 209 ArsA_ATPase PF02374.10 305 2.6e-08 25.8 0.4 2 2 0.053 4.4 -1.2 0.0 121 135 69 85 47 86 0.75 # 15807 # 16433 # -1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.453 1_18 - 209 VirC1 PF07015.6 231 2.3e-09 29.3 0.0 1 1 5.9e-11 4.9e-09 28.2 0.0 3 172 2 164 1 206 0.75 # 15807 # 16433 # -1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.453 1_18 - 209 Fer4_NifH PF00142.13 273 6.2e-05 14.9 0.0 1 1 2.3e-06 0.00019 13.3 0.0 8 38 9 39 2 46 0.89 # 15807 # 16433 # -1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.453 1_14 - 1086 AAA_16 PF13191.1 185 5.6e-06 19.1 0.1 1 2 2.2e-06 0.00018 14.1 0.0 5 175 297 459 294 467 0.69 # 8185 # 11442 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.553 1_14 - 1086 AAA_16 PF13191.1 185 5.6e-06 19.1 0.1 2 2 0.014 1.1 1.8 0.0 31 160 459 596 456 621 0.52 # 8185 # 11442 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.553 1_18 - 209 CbiA PF01656.18 195 2e-22 72.2 0.0 1 1 4.7e-24 3.9e-22 71.2 0.0 1 154 3 137 3 178 0.78 # 15807 # 16433 # -1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.453 1_16 - 676 N6_Mtase PF02384.11 311 1.1e-52 171.7 0.0 1 1 4e-54 1.6e-52 171.1 0.0 5 275 155 460 152 472 0.84 # 12093 # 14120 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.569 1_37 - 188 N6_Mtase PF02384.11 311 8.1e-05 14.4 0.0 1 2 5.3e-05 0.0022 9.7 0.0 28 71 32 75 21 93 0.82 # 30221 # 30784 # 1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.590 1_37 - 188 N6_Mtase PF02384.11 311 8.1e-05 14.4 0.0 2 2 0.011 0.47 2.0 0.0 124 138 111 125 95 133 0.81 # 30221 # 30784 # 1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.590 1_18 - 209 AAA_31 PF13614.1 157 3.5e-06 19.7 0.0 1 2 2.5e-07 2.1e-05 17.1 0.0 2 42 2 42 1 55 0.88 # 15807 # 16433 # -1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.453 1_18 - 209 AAA_31 PF13614.1 157 3.5e-06 19.7 0.0 2 2 0.055 4.5 -0.2 0.0 109 127 68 86 62 113 0.68 # 15807 # 16433 # -1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.453 1_37 - 188 Methyltransf_26 PF13659.1 117 1.5e-13 43.5 0.1 1 1 8.8e-15 2.4e-13 42.8 0.1 2 111 52 144 51 148 0.90 # 30221 # 30784 # 1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.590 1_25 - 234 Methyltransf_26 PF13659.1 117 2.2e-11 36.5 0.2 1 2 9.6e-07 2.7e-05 16.9 0.0 63 113 13 70 3 86 0.72 # 22648 # 23349 # 1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.605 1_25 - 234 Methyltransf_26 PF13659.1 117 2.2e-11 36.5 0.2 2 2 5.9e-07 1.6e-05 17.6 0.1 4 44 174 213 171 228 0.80 # 22648 # 23349 # 1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.605 1_16 - 676 Methyltransf_26 PF13659.1 117 9.9e-09 27.9 0.0 1 1 8.4e-10 2.3e-08 26.7 0.0 4 88 210 310 208 391 0.75 # 12093 # 14120 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.569 1_37 - 188 MTS PF05175.9 170 9e-10 30.8 0.0 1 1 1.5e-11 1.2e-09 30.3 0.0 24 142 43 150 38 170 0.84 # 30221 # 30784 # 1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.590 1_25 - 234 Cons_hypoth95 PF03602.10 183 3.3e-06 19.2 0.0 1 2 0.00016 0.014 7.4 0.0 113 169 19 77 12 86 0.70 # 22648 # 23349 # 1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.605 1_25 - 234 Cons_hypoth95 PF03602.10 183 3.3e-06 19.2 0.0 2 2 3.1e-05 0.0026 9.8 0.0 20 60 149 188 142 225 0.73 # 22648 # 23349 # 1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.605 1_18 - 209 AAA_19 PF13245.1 76 0.00047 12.6 0.1 1 2 9.6e-05 0.008 8.6 0.0 20 48 11 35 9 44 0.84 # 15807 # 16433 # -1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.453 1_18 - 209 AAA_19 PF13245.1 76 0.00047 12.6 0.1 2 2 0.022 1.8 1.1 0.0 42 62 135 155 118 180 0.75 # 15807 # 16433 # -1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.453 1_37 - 188 Methyltransf_2 PF00891.13 242 0.00098 11.0 0.0 1 1 1.7e-05 0.0014 10.4 0.0 111 159 60 110 40 119 0.83 # 30221 # 30784 # 1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.590 1_18 - 209 AAA_10 PF12846.2 304 0.00013 14.1 0.0 1 1 2.5e-06 0.00021 13.4 0.0 11 39 11 39 3 67 0.90 # 15807 # 16433 # -1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.453 1_3 - 191 NodS PF05401.6 201 0.00063 11.8 0.0 1 2 0.049 4 -0.6 0.0 42 154 34 59 19 69 0.63 # 906 # 1478 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.674 1_3 - 191 NodS PF05401.6 201 0.00063 11.8 0.0 2 2 2.8e-05 0.0023 9.9 0.0 25 70 99 144 87 172 0.84 # 906 # 1478 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.674 1_14 - 1086 ResIII PF04851.10 184 1.6e-14 46.8 1.4 1 2 7.4e-16 6.1e-14 44.9 0.1 3 183 295 498 293 499 0.77 # 8185 # 11442 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.553 1_14 - 1086 ResIII PF04851.10 184 1.6e-14 46.8 1.4 2 2 0.037 3.1 0.2 0.1 138 158 655 675 587 708 0.72 # 8185 # 11442 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.553 1_37 - 188 TIGR00755 TIGR00755 256 5.3e-08 24.7 0.0 1 1 9e-10 7.5e-08 24.2 0.0 8 105 29 123 26 128 0.90 # 30221 # 30784 # 1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.590 1_18 - 209 AAA_25 PF13481.1 194 0.00011 14.3 0.1 1 1 3.1e-06 0.00026 13.1 0.0 42 87 10 44 3 90 0.78 # 15807 # 16433 # -1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.453 1_25 - 234 Methyltransf_15 PF09445.5 164 0.00062 12.0 0.0 1 2 0.023 1.9 0.6 0.0 53 80 4 30 2 38 0.91 # 22648 # 23349 # 1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.605 1_25 - 234 Methyltransf_15 PF09445.5 164 0.00062 12.0 0.0 2 2 7e-05 0.0058 8.8 0.0 3 30 173 200 171 213 0.90 # 22648 # 23349 # 1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.605 1_14 - 1086 SNF2_N PF00176.18 299 0.00029 12.3 0.1 1 1 7.6e-06 0.00063 11.2 0.1 1 159 299 459 299 469 0.70 # 8185 # 11442 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.553 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/8d464ac3-0714-461f-bb2d-fc4fdc85438d # Target file: checkm_output/bins/pm683/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm683/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/8d464ac3-0714-461f-bb2d-fc4fdc85438d checkm_output/bins/pm683/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 17:08:37 2020 # [ok]