# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 4_2 - 276 cobW PF02492.14 178 0.0019 10.5 1.4 1 2 5.4e-05 0.0049 9.1 0.7 3 21 40 58 38 80 0.88 # 931 # 1758 # 1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.618 4_2 - 276 cobW PF02492.14 178 0.0019 10.5 1.4 2 2 0.046 4.2 -0.5 0.0 93 132 179 215 145 249 0.67 # 931 # 1758 # 1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.618 4_12 - 288 DUF1776 PF08643.5 299 1.5e-06 20.3 0.0 1 1 2.2e-08 2e-06 19.9 0.0 105 197 94 183 43 200 0.92 # 9274 # 10137 # -1 # ID=4_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.441 1_12 - 260 IstB_IS21 PF01695.12 178 7.8e-66 213.6 0.0 1 1 2.2e-67 2e-65 212.3 0.0 2 177 56 233 55 234 0.96 # 13102 # 13881 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.618 2_3 - 402 MipZ PF09140.6 261 1.7e-06 20.0 0.0 1 2 0.0027 0.24 3.1 0.0 3 50 111 163 109 193 0.73 # 3019 # 4224 # 1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.457 2_3 - 402 MipZ PF09140.6 261 1.7e-06 20.0 0.0 2 2 8.7e-07 7.9e-05 14.6 0.0 87 136 233 282 220 296 0.87 # 3019 # 4224 # 1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.457 3_13 - 565 3HCDH_N PF02737.13 180 0.0029 10.0 6.4 1 2 0.0047 0.43 2.9 2.4 1 30 99 128 99 134 0.93 # 9078 # 10772 # 1 # ID=3_13;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.652 3_13 - 565 3HCDH_N PF02737.13 180 0.0029 10.0 6.4 2 2 9e-05 0.0082 8.6 0.1 2 39 272 309 271 348 0.73 # 9078 # 10772 # 1 # ID=3_13;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.652 3_13 - 565 GIDA PF01134.17 392 2.3e-08 26.0 6.6 1 3 3.5e-10 3.1e-08 25.5 3.3 2 187 100 279 99 302 0.72 # 9078 # 10772 # 1 # ID=3_13;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.652 3_13 - 565 GIDA PF01134.17 392 2.3e-08 26.0 6.6 2 3 0.038 3.4 -0.9 0.0 3 31 273 301 271 315 0.84 # 9078 # 10772 # 1 # ID=3_13;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.652 3_13 - 565 GIDA PF01134.17 392 2.3e-08 26.0 6.6 3 3 0.018 1.7 0.1 0.1 349 385 393 429 387 433 0.77 # 9078 # 10772 # 1 # ID=3_13;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.652 3_13 - 565 Pyr_redox_2 PF07992.9 201 7.2e-44 142.8 0.0 1 1 3.2e-45 3e-43 140.8 0.0 2 199 100 410 99 412 0.96 # 9078 # 10772 # 1 # ID=3_13;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.652 1_12 - 260 AAA_22 PF13401.1 131 1.1e-06 21.6 0.0 1 2 8.3e-06 0.00038 13.4 0.1 4 28 101 125 98 148 0.75 # 13102 # 13881 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.618 1_12 - 260 AAA_22 PF13401.1 131 1.1e-06 21.6 0.0 2 2 0.0016 0.075 6.0 0.0 77 101 151 178 124 201 0.64 # 13102 # 13881 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.618 4_2 - 276 AAA_22 PF13401.1 131 2.3e-06 20.6 0.4 1 1 1e-06 4.6e-05 16.4 0.4 4 127 37 214 34 218 0.76 # 931 # 1758 # 1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.618 3_13 - 565 DFP PF04127.10 185 0.00071 12.0 2.4 1 2 0.00039 0.036 6.4 0.4 28 51 105 128 99 156 0.83 # 9078 # 10772 # 1 # ID=3_13;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.652 3_13 - 565 DFP PF04127.10 185 0.00071 12.0 2.4 2 2 0.0014 0.13 4.7 0.1 32 53 281 302 276 336 0.77 # 9078 # 10772 # 1 # ID=3_13;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.652 3_9 - 237 AAA_15 PF13175.1 415 5e-09 28.4 0.0 1 1 1.4e-10 6.6e-09 28.0 0.0 2 46 5 48 4 67 0.90 # 7001 # 7711 # 1 # ID=3_9;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.534 4_2 - 276 AAA_15 PF13175.1 415 7.8e-06 17.9 0.0 1 2 0.00035 0.016 6.9 0.0 18 47 32 62 24 82 0.82 # 931 # 1758 # 1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.618 4_2 - 276 AAA_15 PF13175.1 415 7.8e-06 17.9 0.0 2 2 9e-05 0.0041 8.9 0.0 370 410 168 210 156 212 0.89 # 931 # 1758 # 1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.618 3_13 - 565 NAD_binding_7 PF13241.1 103 3.1e-07 23.4 1.2 1 2 5.4e-05 0.0049 9.9 0.2 9 38 99 128 96 184 0.89 # 9078 # 10772 # 1 # ID=3_13;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.652 3_13 - 565 NAD_binding_7 PF13241.1 103 3.1e-07 23.4 1.2 2 2 1.4e-05 0.0013 11.8 0.1 8 41 270 306 264 380 0.74 # 9078 # 10772 # 1 # ID=3_13;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.652 1_12 - 260 AAA_17 PF13207.1 121 0.00035 14.2 0.0 1 1 6.5e-06 0.00059 13.4 0.0 2 26 104 131 103 216 0.74 # 13102 # 13881 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.618 4_2 - 276 AAA_21 PF13304.1 303 5.1e-11 35.8 0.1 1 2 5e-06 0.00023 13.9 0.3 1 22 39 60 39 80 0.89 # 931 # 1758 # 1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.618 4_2 - 276 AAA_21 PF13304.1 303 5.1e-11 35.8 0.1 2 2 9.2e-08 4.2e-06 19.6 0.0 235 298 150 211 137 214 0.87 # 931 # 1758 # 1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.618 3_9 - 237 AAA_21 PF13304.1 303 1.2e-05 18.2 0.0 1 1 4.6e-07 2.1e-05 17.3 0.0 2 24 27 49 27 83 0.83 # 7001 # 7711 # 1 # ID=3_9;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.534 4_2 - 276 Arf PF00025.16 175 0.001 11.1 0.0 1 1 1.9e-05 0.0017 10.4 0.0 18 36 41 59 28 73 0.82 # 931 # 1758 # 1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.618 1_12 - 260 PhoH PF02562.11 205 2.9e-07 22.7 0.1 1 1 5e-09 4.5e-07 22.0 0.1 14 56 96 138 84 163 0.80 # 13102 # 13881 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.618 1_12 - 260 AFG1_ATPase PF03969.11 362 0.00028 12.5 0.0 1 1 5.8e-06 0.00053 11.6 0.0 64 214 103 251 81 258 0.78 # 13102 # 13881 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.618 4_2 - 276 G-alpha PF00503.15 389 0.00097 10.6 0.0 1 1 1.1e-05 0.00097 10.6 0.0 62 91 41 85 35 216 0.86 # 931 # 1758 # 1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.618 3_13 - 565 NAD_binding_8 PF13450.1 68 3.2e-05 16.7 1.2 1 2 3.5e-07 3.2e-05 16.7 1.2 1 35 102 135 102 155 0.90 # 9078 # 10772 # 1 # ID=3_13;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.652 3_13 - 565 NAD_binding_8 PF13450.1 68 3.2e-05 16.7 1.2 2 2 0.041 3.7 0.5 0.2 1 25 274 298 274 303 0.81 # 9078 # 10772 # 1 # ID=3_13;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.652 4_5 - 337 F420_oxidored PF03807.12 96 1.2e-05 18.5 0.0 1 1 5.5e-07 2.5e-05 17.5 0.0 1 73 147 212 147 236 0.81 # 3463 # 4473 # 1 # ID=4_5;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.634 3_13 - 565 F420_oxidored PF03807.12 96 0.0064 9.7 4.1 1 2 0.0047 0.21 4.9 1.2 2 31 100 126 99 131 0.87 # 9078 # 10772 # 1 # ID=3_13;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.652 3_13 - 565 F420_oxidored PF03807.12 96 0.0064 9.7 4.1 2 2 0.015 0.68 3.3 0.1 1 34 271 300 271 323 0.87 # 9078 # 10772 # 1 # ID=3_13;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.652 3_9 - 237 SMC_N PF02463.14 220 2.4e-10 32.7 0.0 1 1 7.7e-12 3.5e-10 32.2 0.0 2 71 4 69 3 79 0.85 # 7001 # 7711 # 1 # ID=3_9;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.534 4_2 - 276 SMC_N PF02463.14 220 3.8e-05 15.7 0.0 1 1 5.3e-05 0.0024 9.9 0.0 24 185 37 196 24 231 0.47 # 931 # 1758 # 1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.618 1_12 - 260 AAA_16 PF13191.1 185 1.3e-05 18.0 2.4 1 2 2.4e-06 0.00011 15.0 0.1 23 51 100 128 86 149 0.80 # 13102 # 13881 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.618 1_12 - 260 AAA_16 PF13191.1 185 1.3e-05 18.0 2.4 2 2 0.071 3.2 0.4 0.0 124 162 143 175 125 192 0.74 # 13102 # 13881 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.618 4_2 - 276 AAA_16 PF13191.1 185 6.9e-05 15.6 6.7 1 1 4.8e-06 0.00022 14.0 6.7 23 131 36 188 25 247 0.51 # 931 # 1758 # 1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.618 3_9 - 237 AAA_23 PF13476.1 202 1.5e-11 37.8 0.0 1 1 3.2e-13 1.5e-11 37.8 0.0 1 53 6 58 6 202 0.88 # 7001 # 7711 # 1 # ID=3_9;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.534 4_2 - 276 AAA_23 PF13476.1 202 2.7e-05 17.3 0.0 1 1 8.3e-07 3.8e-05 16.8 0.0 10 40 27 58 23 99 0.85 # 931 # 1758 # 1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.618 4_2 - 276 AAA_18 PF13238.1 129 0.00044 13.4 0.0 1 1 2e-05 0.0018 11.4 0.0 3 33 42 75 41 119 0.75 # 931 # 1758 # 1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.618 4_12 - 288 adh_short PF00106.20 167 1.8e-33 108.6 0.3 1 2 8.5e-35 7.7e-33 106.5 0.1 3 165 11 171 9 173 0.93 # 9274 # 10137 # -1 # ID=4_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.441 4_12 - 288 adh_short PF00106.20 167 1.8e-33 108.6 0.3 2 2 0.047 4.3 -0.0 0.0 66 110 227 274 205 279 0.66 # 9274 # 10137 # -1 # ID=4_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.441 4_2 - 276 AAA_13 PF13166.1 712 0.0003 12.0 0.0 1 2 0.0045 0.41 1.7 0.0 17 39 38 60 27 84 0.87 # 931 # 1758 # 1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.618 4_2 - 276 AAA_13 PF13166.1 712 0.0003 12.0 0.0 2 2 4.9e-05 0.0045 8.2 0.0 527 579 169 220 162 230 0.85 # 931 # 1758 # 1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.618 2_3 - 402 CbiA PF01656.18 195 1.4e-18 59.8 0.0 1 1 5.6e-20 2.6e-18 58.9 0.0 1 142 111 292 111 327 0.76 # 3019 # 4224 # 1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.457 1_12 - 260 CbiA PF01656.18 195 0.00088 11.5 0.0 1 1 2.5e-05 0.0011 11.1 0.0 3 42 105 145 104 254 0.75 # 13102 # 13881 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.618 1_12 - 260 AAA_14 PF13173.1 128 3.2e-07 23.1 0.0 1 2 1.7e-08 1.6e-06 20.9 0.0 3 97 102 203 100 219 0.64 # 13102 # 13881 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.618 1_12 - 260 AAA_14 PF13173.1 128 3.2e-07 23.1 0.0 2 2 0.048 4.4 0.0 0.0 14 46 215 247 212 257 0.80 # 13102 # 13881 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.618 4_5 - 337 Rossmann-like PF10727.4 127 0.00011 14.7 0.0 1 1 2.5e-06 0.00022 13.7 0.0 12 102 147 234 136 255 0.80 # 3463 # 4473 # 1 # ID=4_5;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.634 3_13 - 565 HI0933_like PF03486.9 409 2e-08 25.8 3.7 1 2 1.2e-06 0.00011 13.5 2.5 2 33 99 130 98 138 0.91 # 9078 # 10772 # 1 # ID=3_13;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.652 3_13 - 565 HI0933_like PF03486.9 409 2e-08 25.8 3.7 2 2 7.2e-06 0.00066 10.9 0.0 82 164 284 366 276 385 0.83 # 9078 # 10772 # 1 # ID=3_13;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.652 2_13 - 129 Ribosomal_S20p PF01649.13 84 0.00025 14.2 0.1 1 1 4.8e-06 0.00044 13.4 0.1 6 59 56 109 53 118 0.75 # 12553 # 12939 # -1 # ID=2_13;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.442 3_9 - 237 AAA_29 PF13555.1 62 4.9e-08 25.2 0.0 1 1 1.8e-09 8.4e-08 24.5 0.0 2 49 5 50 4 57 0.82 # 7001 # 7711 # 1 # ID=3_9;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.534 4_2 - 276 AAA_29 PF13555.1 62 1.8e-07 23.5 0.4 1 1 9.7e-09 4.4e-07 22.2 0.4 16 51 31 65 22 70 0.85 # 931 # 1758 # 1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.618 3_13 - 565 FAD_binding_2 PF00890.19 417 3.9e-06 18.6 4.7 1 3 4.3e-08 3.9e-06 18.6 4.7 2 32 100 130 99 137 0.90 # 9078 # 10772 # 1 # ID=3_13;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.652 3_13 - 565 FAD_binding_2 PF00890.19 417 3.9e-06 18.6 4.7 2 3 0.034 3.1 -0.8 0.1 143 204 311 369 297 388 0.72 # 9078 # 10772 # 1 # ID=3_13;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.652 3_13 - 565 FAD_binding_2 PF00890.19 417 3.9e-06 18.6 4.7 3 3 0.074 6.8 -1.9 0.0 376 402 388 408 377 424 0.82 # 9078 # 10772 # 1 # ID=3_13;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.652 1_12 - 260 AAA PF00004.24 132 1.9e-08 27.3 0.0 1 1 4.1e-10 3.7e-08 26.4 0.0 1 70 104 175 104 207 0.82 # 13102 # 13881 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.618 1_12 - 260 Bac_DnaA PF00308.13 219 4.7e-09 28.9 0.0 1 1 7.8e-11 7.1e-09 28.4 0.0 36 136 103 201 90 209 0.84 # 13102 # 13881 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.618 4_12 - 288 KR PF08659.5 181 4.8e-13 41.9 0.1 1 1 1.2e-14 1.1e-12 40.7 0.1 4 167 12 172 10 185 0.86 # 9274 # 10137 # -1 # ID=4_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.441 3_13 - 565 Pyr_redox_3 PF13738.1 203 1.2e-17 57.4 0.1 1 2 4.4e-14 4e-12 39.3 0.1 1 201 101 303 101 305 0.75 # 9078 # 10772 # 1 # ID=3_13;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.652 3_13 - 565 Pyr_redox_3 PF13738.1 203 1.2e-17 57.4 0.1 2 2 9e-07 8.2e-05 15.5 0.0 93 147 320 375 309 430 0.76 # 9078 # 10772 # 1 # ID=3_13;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.652 4_2 - 276 MMR_HSR1 PF01926.18 116 0.00078 12.2 0.0 1 1 1.8e-05 0.0017 11.2 0.0 3 20 41 58 39 96 0.86 # 931 # 1758 # 1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.618 4_2 - 276 DUF258 PF03193.11 161 5e-06 18.5 0.1 1 1 1.7e-07 7.8e-06 17.9 0.1 34 67 36 69 16 95 0.81 # 931 # 1758 # 1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.618 1_12 - 260 DUF258 PF03193.11 161 0.00019 13.4 0.0 1 1 7.3e-06 0.00033 12.6 0.0 26 59 92 125 80 153 0.82 # 13102 # 13881 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.618 4_5 - 337 NAD_binding_2 PF03446.10 163 8.5e-09 28.2 0.0 1 1 1.6e-10 1.4e-08 27.5 0.0 2 98 146 240 145 256 0.82 # 3463 # 4473 # 1 # ID=4_5;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.634 2_3 - 402 AAA_31 PF13614.1 157 8.6e-05 15.3 0.0 1 1 5.5e-06 0.0005 12.8 0.0 108 147 235 273 230 279 0.86 # 3019 # 4224 # 1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.457 1_12 - 260 NTPase_1 PF03266.10 168 0.00021 13.8 0.1 1 2 0.0015 0.14 4.6 0.1 2 30 104 132 103 143 0.82 # 13102 # 13881 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.618 1_12 - 260 NTPase_1 PF03266.10 168 0.00021 13.8 0.1 2 2 0.0003 0.027 6.9 0.0 87 108 155 176 141 202 0.77 # 13102 # 13881 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.618 4_2 - 276 AAA_33 PF13671.1 143 8.8e-05 15.2 0.4 1 1 2.4e-06 0.00022 13.9 0.4 2 20 40 61 39 121 0.67 # 931 # 1758 # 1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.618 4_5 - 337 2-Hacid_dh_C PF02826.14 178 8.9e-50 161.0 0.0 1 1 1.3e-51 1.2e-49 160.6 0.0 1 178 109 294 109 294 0.93 # 3463 # 4473 # 1 # ID=4_5;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.634 4_2 - 276 AAA_30 PF13604.1 196 4.8e-05 15.8 0.0 1 1 1.4e-06 0.00013 14.3 0.0 16 49 35 68 28 70 0.86 # 931 # 1758 # 1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.618 3_9 - 237 DUF2813 PF11398.3 373 5.7e-05 15.0 0.3 1 2 2e-06 0.00018 13.4 0.0 11 49 12 51 3 56 0.79 # 7001 # 7711 # 1 # ID=3_9;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.534 3_9 - 237 DUF2813 PF11398.3 373 5.7e-05 15.0 0.3 2 2 0.041 3.7 -0.8 0.1 94 148 126 180 118 226 0.52 # 7001 # 7711 # 1 # ID=3_9;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.534 4_2 - 276 ABC_tran PF00005.22 137 1.3e-30 99.3 0.0 1 1 5.8e-32 1.8e-30 98.8 0.0 1 137 27 180 27 180 0.90 # 931 # 1758 # 1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.618 3_9 - 237 ABC_tran PF00005.22 137 8.3e-05 15.7 0.0 1 1 4.3e-06 0.00013 15.1 0.0 15 113 28 155 18 173 0.74 # 7001 # 7711 # 1 # ID=3_9;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.534 1_12 - 260 ABC_tran PF00005.22 137 0.00048 13.2 0.2 1 1 6.1e-05 0.0018 11.3 0.1 8 31 98 121 95 132 0.86 # 13102 # 13881 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.618 3_13 - 565 K_oxygenase PF13434.1 341 5.2e-06 18.3 0.0 1 3 0.0039 0.36 2.4 0.0 187 220 94 125 59 130 0.79 # 9078 # 10772 # 1 # ID=3_13;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.652 3_13 - 565 K_oxygenase PF13434.1 341 5.2e-06 18.3 0.0 2 3 3.3e-06 0.0003 12.5 0.0 132 231 218 308 202 332 0.82 # 9078 # 10772 # 1 # ID=3_13;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.652 3_13 - 565 K_oxygenase PF13434.1 341 5.2e-06 18.3 0.0 3 3 0.057 5.2 -1.4 0.0 132 160 346 369 314 377 0.67 # 9078 # 10772 # 1 # ID=3_13;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.652 1_12 - 260 AAA_19 PF13245.1 76 0.00061 12.3 0.2 1 1 2.6e-05 0.0024 10.5 0.0 11 35 103 126 95 157 0.81 # 13102 # 13881 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.618 4_12 - 288 RmlD_sub_bind PF04321.12 287 0.00069 11.3 0.0 1 1 1.4e-05 0.0012 10.5 0.0 3 69 11 100 8 123 0.84 # 9274 # 10137 # -1 # ID=4_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.441 4_12 - 288 NAD_binding_10 PF13460.1 183 1.6e-05 17.7 0.0 1 1 3.4e-07 3.1e-05 16.8 0.0 3 145 13 186 12 213 0.71 # 9274 # 10137 # -1 # ID=4_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.441 1_12 - 260 AAA_10 PF12846.2 304 3.4e-05 16.1 0.2 1 2 0.029 1.3 1.1 0.0 106 155 28 69 4 89 0.61 # 13102 # 13881 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.618 1_12 - 260 AAA_10 PF12846.2 304 3.4e-05 16.1 0.2 2 2 8.8e-06 0.0004 12.6 0.1 3 35 103 135 101 172 0.84 # 13102 # 13881 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.618 4_2 - 276 AAA_10 PF12846.2 304 0.00064 11.9 0.9 1 1 3.6e-05 0.0016 10.6 0.4 4 25 40 61 37 70 0.81 # 931 # 1758 # 1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.618 4_12 - 288 adh_short_C2 PF13561.1 241 3.2e-19 62.4 0.0 1 1 4.6e-21 4.2e-19 62.0 0.0 5 182 17 188 15 220 0.90 # 9274 # 10137 # -1 # ID=4_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.441 4_2 - 276 SbcCD_C PF13558.1 90 0.00028 13.6 0.1 1 1 2.6e-05 0.0024 10.6 0.1 27 89 146 195 130 196 0.79 # 931 # 1758 # 1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.618 3_13 - 565 FAD_oxidored PF12831.2 428 2.7e-06 19.4 3.6 1 1 2.9e-08 2.7e-06 19.4 3.6 2 41 100 138 99 167 0.83 # 9078 # 10772 # 1 # ID=3_13;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.652 3_13 - 565 DAO PF01266.19 358 3.8e-09 28.6 11.7 1 3 1.4e-08 1.2e-06 20.3 0.7 1 38 99 134 99 190 0.84 # 9078 # 10772 # 1 # ID=3_13;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.652 3_13 - 565 DAO PF01266.19 358 3.8e-09 28.6 11.7 2 3 0.032 2.9 -0.6 0.1 3 31 273 301 271 307 0.75 # 9078 # 10772 # 1 # ID=3_13;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.652 3_13 - 565 DAO PF01266.19 358 3.8e-09 28.6 11.7 3 3 9.4e-07 8.6e-05 14.3 0.5 152 208 314 372 307 433 0.74 # 9078 # 10772 # 1 # ID=3_13;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.652 4_5 - 337 ThiF PF00899.16 136 0.0023 10.5 5.4 1 3 0.017 1.5 1.4 0.1 78 117 8 47 5 61 0.77 # 3463 # 4473 # 1 # ID=4_5;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.634 4_5 - 337 ThiF PF00899.16 136 0.0023 10.5 5.4 2 3 0.00014 0.012 8.2 1.6 2 26 145 169 144 172 0.92 # 3463 # 4473 # 1 # ID=4_5;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.634 4_5 - 337 ThiF PF00899.16 136 0.0023 10.5 5.4 3 3 0.047 4.3 -0.1 0.0 84 111 192 220 172 229 0.78 # 3463 # 4473 # 1 # ID=4_5;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.634 3_13 - 565 NAD_binding_9 PF13454.1 156 2.6e-05 16.8 2.8 1 3 0.0081 0.74 2.3 0.1 1 41 101 135 101 162 0.81 # 9078 # 10772 # 1 # ID=3_13;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.652 3_13 - 565 NAD_binding_9 PF13454.1 156 2.6e-05 16.8 2.8 2 3 0.034 3.1 0.3 0.0 134 155 218 241 202 242 0.72 # 9078 # 10772 # 1 # ID=3_13;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.652 3_13 - 565 NAD_binding_9 PF13454.1 156 2.6e-05 16.8 2.8 3 3 6.6e-06 0.0006 12.4 0.1 112 155 321 366 311 367 0.85 # 9078 # 10772 # 1 # ID=3_13;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.652 3_13 - 565 Pyr_redox PF00070.22 80 3.3e-20 65.1 6.0 1 2 1.4e-06 0.00013 15.2 1.5 1 31 99 129 99 131 0.96 # 9078 # 10772 # 1 # ID=3_13;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.652 3_13 - 565 Pyr_redox PF00070.22 80 3.3e-20 65.1 6.0 2 2 6.2e-18 5.7e-16 51.6 0.2 1 74 271 345 271 354 0.90 # 9078 # 10772 # 1 # ID=3_13;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.652 1_12 - 260 Sigma54_activ_2 PF14532.1 138 0.00036 13.4 0.0 1 1 6.3e-06 0.00057 12.7 0.0 9 64 87 144 84 229 0.70 # 13102 # 13881 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.618 4_5 - 337 IlvN PF07991.7 165 1.5e-05 17.2 0.0 1 2 0.037 3.3 -0.2 0.0 50 77 35 62 19 69 0.76 # 3463 # 4473 # 1 # ID=4_5;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.634 4_5 - 337 IlvN PF07991.7 165 1.5e-05 17.2 0.0 2 2 9.6e-07 8.7e-05 14.7 0.0 2 90 143 231 142 238 0.82 # 3463 # 4473 # 1 # ID=4_5;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.634 3_13 - 565 AlaDh_PNT_C PF01262.16 168 2.2e-05 16.9 3.1 1 2 0.00051 0.047 6.0 0.8 15 50 92 127 89 130 0.90 # 9078 # 10772 # 1 # ID=3_13;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.652 3_13 - 565 AlaDh_PNT_C PF01262.16 168 2.2e-05 16.9 3.1 2 2 2.1e-05 0.0019 10.5 0.1 16 58 265 307 257 339 0.84 # 9078 # 10772 # 1 # ID=3_13;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.652 1_12 - 260 AAA_24 PF13479.1 213 0.0012 11.2 0.1 1 1 3e-05 0.0028 10.0 0.1 5 23 103 121 99 127 0.85 # 13102 # 13881 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.618 1_12 - 260 NACHT PF05729.7 166 0.00012 14.6 0.0 1 1 2.1e-06 0.00019 13.9 0.0 3 49 104 151 102 200 0.81 # 13102 # 13881 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.618 1_12 - 260 AAA_25 PF13481.1 194 6.5e-07 21.7 0.1 1 1 4.4e-08 2e-06 20.1 0.1 9 60 72 128 68 201 0.77 # 13102 # 13881 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.618 4_2 - 276 AAA_25 PF13481.1 194 1.7e-05 17.0 0.1 1 2 2.3e-06 0.0001 14.5 0.1 31 65 35 70 21 148 0.70 # 931 # 1758 # 1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.618 4_2 - 276 AAA_25 PF13481.1 194 1.7e-05 17.0 0.1 2 2 0.059 2.7 0.1 0.0 167 188 189 210 179 213 0.84 # 931 # 1758 # 1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.618 4_2 - 276 AAA_28 PF13521.1 163 6.4e-05 15.7 0.1 1 1 2.7e-06 0.00012 14.8 0.1 3 75 41 112 39 117 0.78 # 931 # 1758 # 1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.618 1_12 - 260 AAA_28 PF13521.1 163 0.00023 13.9 0.0 1 1 1e-05 0.00045 13.0 0.0 1 49 103 156 103 171 0.73 # 13102 # 13881 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.618 1_12 - 260 AAA_5 PF07728.9 139 1.7e-05 17.4 0.0 1 1 4.6e-07 4.2e-05 16.1 0.0 1 74 103 172 103 177 0.80 # 13102 # 13881 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.618 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/b1180144-cedc-475f-b8d8-66d77a9af858 # Target file: checkm_output/bins/pm678/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm678/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/b1180144-cedc-475f-b8d8-66d77a9af858 checkm_output/bins/pm678/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 17:08:33 2020 # [ok]