# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_16 - 458 Methyltransf_12 PF08242.7 99 2.6e-05 17.1 0.1 1 1 1.1e-06 8e-05 15.5 0.1 2 98 243 333 242 334 0.73 # 11957 # 13330 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.491 1_43 - 218 IstB_IS21 PF01695.12 178 0.00017 13.4 0.3 1 1 7e-06 0.00049 11.9 0.3 51 89 7 45 4 108 0.89 # 26429 # 27082 # 1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.476 1_43 - 218 MipZ PF09140.6 261 1.8e-10 32.7 0.0 1 1 4.1e-12 2.9e-10 32.0 0.0 5 60 7 62 3 129 0.77 # 26429 # 27082 # 1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.476 1_16 - 458 Methyltransf_18 PF12847.2 112 0.00017 14.6 0.0 1 1 8.9e-06 0.00063 12.8 0.0 2 109 238 336 237 338 0.79 # 11957 # 13330 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.491 1_43 - 218 SRP54 PF00448.17 196 6.8e-05 14.8 0.0 1 1 1.3e-06 9.2e-05 14.3 0.0 4 91 6 89 3 150 0.88 # 26429 # 27082 # 1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.476 1_43 - 218 AAA_17 PF13207.1 121 7.2e-05 16.0 0.0 1 1 3.8e-06 0.00027 14.2 0.0 6 38 10 61 5 131 0.62 # 26429 # 27082 # 1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.476 1_43 - 218 ArsA_ATPase PF02374.10 305 1.9e-07 22.8 0.1 1 2 2.7e-08 1.9e-06 19.5 0.2 5 38 7 40 3 42 0.93 # 26429 # 27082 # 1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.476 1_43 - 218 ArsA_ATPase PF02374.10 305 1.9e-07 22.8 0.1 2 2 0.016 1.1 0.5 0.0 117 133 72 88 60 91 0.91 # 26429 # 27082 # 1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.476 1_43 - 218 VirC1 PF07015.6 231 0.00039 11.9 0.0 1 1 1.1e-05 0.00076 11.0 0.0 10 130 11 128 3 132 0.84 # 26429 # 27082 # 1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.476 1_43 - 218 Methyltransf_16 PF10294.4 174 0.00025 12.9 0.0 1 1 5.5e-06 0.00038 12.3 0.0 62 146 23 107 19 112 0.89 # 26429 # 27082 # 1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.476 1_68 - 931 AAA_13 PF13166.1 712 0.057 4.1 25.6 1 2 4.7e-05 0.0033 8.2 19.4 271 478 18 232 12 243 0.79 # 45063 # 47855 # -1 # ID=1_68;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.421 1_68 - 931 AAA_13 PF13166.1 712 0.057 4.1 25.6 2 2 0.054 3.8 -1.9 0.4 485 494 448 457 398 551 0.51 # 45063 # 47855 # -1 # ID=1_68;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.421 1_43 - 218 CbiA PF01656.18 195 1.2e-17 56.3 0.1 1 1 2.8e-19 2e-17 55.6 0.1 3 194 7 178 5 180 0.76 # 26429 # 27082 # 1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.476 1_23 - 196 MT-A70 PF05063.9 176 2e-34 111.0 0.0 1 1 3.3e-36 2.3e-34 110.8 0.0 1 176 7 180 7 180 0.91 # 15937 # 16524 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.493 1_43 - 218 AAA_31 PF13614.1 157 2.5e-09 29.6 0.0 1 2 2.2e-08 1.5e-06 20.6 0.0 3 44 5 46 4 65 0.89 # 26429 # 27082 # 1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.476 1_43 - 218 AAA_31 PF13614.1 157 2.5e-09 29.6 0.0 2 2 0.00034 0.024 7.0 0.0 116 149 78 112 69 119 0.83 # 26429 # 27082 # 1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.476 1_27 - 132 CoA_binding_3 PF13727.1 175 1.9e-05 16.9 0.7 1 1 3.6e-07 2.5e-05 16.5 0.7 26 81 31 88 25 120 0.77 # 18289 # 18684 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.485 1_21 - 66 FERM_N PF09379.5 80 0.0003 13.3 0.0 1 1 4.7e-06 0.00033 13.1 0.0 6 43 11 50 7 60 0.88 # 15359 # 15556 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 1_41 - 221 Urm1 PF09138.6 96 0.00017 14.1 0.0 1 1 6.7e-06 0.00047 12.7 0.0 44 87 127 169 107 175 0.84 # 25149 # 25811 # 1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.463 1_16 - 458 Methyltransf_23 PF13489.1 161 4.7e-17 54.6 0.0 1 1 1.1e-18 7.6e-17 53.9 0.0 20 159 235 400 198 402 0.72 # 11957 # 13330 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.491 1_12 - 619 Terminase_GpA PF05876.7 557 4.4e-175 575.5 0.0 1 1 8.4e-177 5.9e-175 575.1 0.0 4 551 34 583 31 590 0.96 # 7660 # 9516 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.442 1_43 - 218 AAA_25 PF13481.1 194 1e-05 17.4 1.0 1 1 5.3e-07 3.7e-05 15.6 1.0 34 92 4 52 2 96 0.67 # 26429 # 27082 # 1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.476 1_34 - 356 ABC_tran_2 PF12848.2 85 0.092 5.1 10.0 1 2 0.0061 0.42 3.0 1.6 17 59 89 114 74 128 0.53 # 21388 # 22455 # -1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.464 1_34 - 356 ABC_tran_2 PF12848.2 85 0.092 5.1 10.0 2 2 0.00038 0.026 6.8 0.1 52 79 260 287 256 294 0.77 # 21388 # 22455 # -1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.464 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/c3a9245d-ae1c-4ef4-8fc5-0eb1fdcd98f9 # Target file: checkm_output/bins/pm662/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm662/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/c3a9245d-ae1c-4ef4-8fc5-0eb1fdcd98f9 checkm_output/bins/pm662/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 17:08:22 2020 # [ok]