# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_59 - 228 UPF0020 PF01170.13 180 8.6e-06 18.4 0.0 1 2 0.00018 0.019 7.5 0.0 105 123 19 37 2 89 0.68 # 48475 # 49158 # -1 # ID=1_59;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.567 1_59 - 228 UPF0020 PF01170.13 180 8.6e-06 18.4 0.0 2 2 6.2e-05 0.0065 9.0 0.0 28 54 163 189 158 221 0.67 # 48475 # 49158 # -1 # ID=1_59;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.567 1_45 - 260 IstB_IS21 PF01695.12 178 4.8e-73 237.3 0.1 1 1 2.9e-74 1e-72 236.2 0.1 1 178 56 235 56 235 0.98 # 39207 # 39986 # 1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 1_78 - 106 IstB_IS21 PF01695.12 178 4.1e-30 97.5 0.0 1 1 1.6e-31 5.5e-30 97.0 0.0 111 177 1 67 1 68 0.98 # 67173 # 67490 # -1 # ID=1_78;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.475 1_79 - 96 IstB_IS21 PF01695.12 178 3.1e-11 36.0 0.2 1 2 0.044 1.5 1.1 0.2 83 111 4 32 2 33 0.87 # 67670 # 67957 # -1 # ID=1_79;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.552 1_79 - 96 IstB_IS21 PF01695.12 178 3.1e-11 36.0 0.2 2 2 7.9e-12 2.8e-10 32.9 0.0 1 41 51 91 51 93 0.95 # 67670 # 67957 # -1 # ID=1_79;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.552 1_64 - 389 MipZ PF09140.6 261 4.5e-06 18.8 0.4 1 2 3.5e-06 0.00037 12.6 0.0 2 47 108 153 107 157 0.87 # 52283 # 53449 # -1 # ID=1_64;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.471 1_64 - 389 MipZ PF09140.6 261 4.5e-06 18.8 0.4 2 2 0.0011 0.12 4.4 0.0 88 134 224 270 197 292 0.84 # 52283 # 53449 # -1 # ID=1_64;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.471 1_51 - 180 SSB PF00436.20 104 5.4e-40 128.5 0.2 1 1 6.5e-42 6.8e-40 128.2 0.2 1 101 6 109 6 112 0.96 # 44151 # 44690 # -1 # ID=1_51;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.598 1_7 - 1757 UvrD_C_2 PF13538.1 104 4.3e-08 26.3 1.0 1 2 0.011 1.2 2.4 0.0 6 45 1227 1266 1223 1294 0.76 # 3627 # 8897 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.600 1_7 - 1757 UvrD_C_2 PF13538.1 104 4.3e-08 26.3 1.0 2 2 1.4e-08 1.5e-06 21.3 0.2 3 102 1341 1444 1339 1446 0.79 # 3627 # 8897 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.600 1_28 - 876 DUF87 PF01935.12 229 1.2e-07 24.7 0.0 1 1 3.3e-09 3.4e-07 23.2 0.0 26 222 482 669 468 676 0.77 # 25172 # 27799 # -1 # ID=1_28;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.540 1_45 - 260 AAA_22 PF13401.1 131 1.6e-06 21.3 0.2 1 2 4.5e-05 0.0023 11.0 0.0 5 21 103 119 99 131 0.83 # 39207 # 39986 # 1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 1_45 - 260 AAA_22 PF13401.1 131 1.6e-06 21.3 0.2 2 2 0.00073 0.038 7.1 0.0 88 103 154 181 126 203 0.66 # 39207 # 39986 # 1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 1_77 - 815 AAA_22 PF13401.1 131 0.0001 15.5 0.8 1 3 0.00018 0.0093 9.1 0.0 5 35 344 374 340 385 0.84 # 63420 # 65864 # 1 # ID=1_77;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.315 1_77 - 815 AAA_22 PF13401.1 131 0.0001 15.5 0.8 2 3 0.028 1.5 2.0 0.0 72 98 381 407 367 440 0.80 # 63420 # 65864 # 1 # ID=1_77;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.315 1_77 - 815 AAA_22 PF13401.1 131 0.0001 15.5 0.8 3 3 0.088 4.6 0.4 0.1 21 86 706 778 683 795 0.73 # 63420 # 65864 # 1 # ID=1_77;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.315 1_59 - 228 N6_N4_Mtase PF01555.13 231 7.8e-37 119.9 0.0 1 1 3.3e-36 3.4e-34 111.2 0.0 1 228 21 200 21 203 0.89 # 48475 # 49158 # -1 # ID=1_59;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.567 1_10 - 718 AAA_17 PF13207.1 121 0.00031 14.6 0.0 1 1 1.2e-05 0.0012 12.6 0.0 3 27 189 217 187 262 0.68 # 9613 # 11766 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.524 1_71 - 713 AAA_21 PF13304.1 303 5e-08 26.1 1.9 1 2 9.3e-06 0.00097 12.1 0.0 7 47 29 82 27 211 0.62 # 58264 # 60402 # -1 # ID=1_71;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.501 1_71 - 713 AAA_21 PF13304.1 303 5e-08 26.1 1.9 2 2 5.8e-06 0.00061 12.7 0.1 219 298 386 487 291 489 0.75 # 58264 # 60402 # -1 # ID=1_71;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.501 1_77 - 815 Miro PF08477.8 119 0.00068 13.1 0.0 1 2 0.0057 0.6 3.6 0.0 52 102 60 110 46 114 0.86 # 63420 # 65864 # 1 # ID=1_77;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.315 1_77 - 815 Miro PF08477.8 119 0.00068 13.1 0.0 2 2 0.00098 0.1 6.1 0.0 2 81 346 427 345 439 0.64 # 63420 # 65864 # 1 # ID=1_77;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.315 1_28 - 876 MobB PF03205.9 140 0.00027 13.7 0.2 1 2 5.4e-05 0.0028 10.3 0.0 4 37 483 515 481 523 0.79 # 25172 # 27799 # -1 # ID=1_28;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.540 1_28 - 876 MobB PF03205.9 140 0.00027 13.7 0.2 2 2 0.069 3.6 0.3 0.0 25 64 695 732 690 744 0.86 # 25172 # 27799 # -1 # ID=1_28;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.540 1_10 - 718 MobB PF03205.9 140 0.00098 11.8 0.0 1 1 5.1e-05 0.0027 10.4 0.0 7 34 192 219 188 225 0.89 # 9613 # 11766 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.524 1_37 - 122 CTP_transf_2 PF01467.21 157 0.00068 12.7 0.0 1 1 6.8e-06 0.00071 12.6 0.0 31 67 6 41 1 98 0.65 # 32910 # 33275 # -1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.516 1_64 - 389 ArsA_ATPase PF02374.10 305 1.8e-06 20.1 0.4 1 2 1.7e-06 0.00017 13.6 0.1 9 36 115 142 109 151 0.89 # 52283 # 53449 # -1 # ID=1_64;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.471 1_64 - 389 ArsA_ATPase PF02374.10 305 1.8e-06 20.1 0.4 2 2 0.0011 0.12 4.3 0.0 123 136 231 244 221 251 0.84 # 52283 # 53449 # -1 # ID=1_64;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.471 1_45 - 260 PhoH PF02562.11 205 1.1e-07 24.2 0.1 1 1 3.6e-09 3.7e-07 22.5 0.0 11 48 94 131 83 159 0.83 # 39207 # 39986 # 1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 1_45 - 260 AFG1_ATPase PF03969.11 362 7.5e-05 14.6 0.2 1 1 2.8e-06 0.00029 12.6 0.2 63 216 103 254 43 259 0.72 # 39207 # 39986 # 1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 1_10 - 718 Zeta_toxin PF06414.7 201 0.00079 11.5 0.0 1 1 3.4e-05 0.0036 9.4 0.0 21 49 190 219 182 236 0.85 # 9613 # 11766 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.524 1_71 - 713 SMC_N PF02463.14 220 0.00023 13.4 0.0 1 2 0.00049 0.051 5.7 0.0 5 45 3 42 1 50 0.78 # 58264 # 60402 # -1 # ID=1_71;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.501 1_71 - 713 SMC_N PF02463.14 220 0.00023 13.4 0.0 2 2 0.00053 0.056 5.6 0.0 135 185 243 469 98 491 0.71 # 58264 # 60402 # -1 # ID=1_71;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.501 1_64 - 389 VirC1 PF07015.6 231 6.9e-05 14.9 0.1 1 2 0.00028 0.029 6.3 0.0 4 42 109 147 107 154 0.91 # 52283 # 53449 # -1 # ID=1_64;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.471 1_64 - 389 VirC1 PF07015.6 231 6.9e-05 14.9 0.1 2 2 0.0003 0.032 6.2 0.1 84 139 235 290 222 312 0.77 # 52283 # 53449 # -1 # ID=1_64;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.471 1_45 - 260 Arch_ATPase PF01637.13 234 0.00098 11.8 0.1 1 2 3.4e-05 0.0036 9.9 0.0 8 37 90 119 87 140 0.79 # 39207 # 39986 # 1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 1_45 - 260 Arch_ATPase PF01637.13 234 0.00098 11.8 0.1 2 2 0.071 7.4 -0.9 0.0 121 150 167 192 144 203 0.68 # 39207 # 39986 # 1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 1_10 - 718 AAA_16 PF13191.1 185 4.8e-06 19.6 0.0 1 1 3.9e-07 2.1e-05 17.6 0.0 21 60 182 222 179 263 0.81 # 9613 # 11766 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.524 1_45 - 260 AAA_16 PF13191.1 185 6.9e-05 15.9 1.1 1 1 5.9e-06 0.00031 13.7 0.1 21 41 99 119 86 151 0.78 # 39207 # 39986 # 1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 1_71 - 713 AAA_23 PF13476.1 202 8.2e-09 29.0 0.0 1 1 4.1e-10 2.1e-08 27.7 0.0 2 197 3 293 2 337 0.71 # 58264 # 60402 # -1 # ID=1_71;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.501 1_77 - 815 AAA_23 PF13476.1 202 0.057 6.7 14.6 1 1 0.039 2.1 1.6 14.6 18 145 342 480 327 809 0.69 # 63420 # 65864 # 1 # ID=1_77;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.315 1_71 - 713 AAA_13 PF13166.1 712 2.4e-26 85.3 0.1 1 3 1.7e-11 1.8e-09 29.5 0.0 15 129 20 151 10 169 0.75 # 58264 # 60402 # -1 # ID=1_71;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.501 1_71 - 713 AAA_13 PF13166.1 712 2.4e-26 85.3 0.1 2 3 5.1e-06 0.00054 11.4 0.0 240 389 195 382 185 387 0.60 # 58264 # 60402 # -1 # ID=1_71;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.501 1_71 - 713 AAA_13 PF13166.1 712 2.4e-26 85.3 0.1 3 3 6.1e-15 6.4e-13 40.9 0.0 496 572 416 489 367 504 0.79 # 58264 # 60402 # -1 # ID=1_71;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.501 1_64 - 389 CbiA PF01656.18 195 1e-36 119.1 0.0 1 1 1.3e-38 1.4e-36 118.7 0.0 2 194 110 339 109 340 0.80 # 52283 # 53449 # -1 # ID=1_64;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.471 1_45 - 260 AAA_14 PF13173.1 128 1.2e-06 21.4 0.0 1 1 4.5e-08 2.4e-06 20.5 0.0 2 96 102 203 101 221 0.67 # 39207 # 39986 # 1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 1_77 - 815 AAA_14 PF13173.1 128 0.00012 14.9 3.3 1 2 6.5e-06 0.00034 13.5 0.2 1 106 342 439 342 453 0.72 # 63420 # 65864 # 1 # ID=1_77;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.315 1_77 - 815 AAA_14 PF13173.1 128 0.00012 14.9 3.3 2 2 0.075 4 0.4 0.1 51 93 710 785 667 802 0.66 # 63420 # 65864 # 1 # ID=1_77;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.315 1_45 - 260 AAA_29 PF13555.1 62 0.00078 12.0 0.0 1 1 1.4e-05 0.0015 11.1 0.0 19 59 98 139 89 141 0.72 # 39207 # 39986 # 1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 1_45 - 260 AAA PF00004.24 132 1.9e-07 24.3 0.0 1 1 3.2e-09 3.3e-07 23.5 0.0 1 74 105 180 105 214 0.77 # 39207 # 39986 # 1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 1_45 - 260 Bac_DnaA PF00308.13 219 1.1e-09 31.2 0.0 1 1 1.6e-11 1.7e-09 30.6 0.0 37 136 105 202 75 207 0.85 # 39207 # 39986 # 1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 1_45 - 260 Sigma54_activat PF00158.21 168 0.00014 14.3 0.1 1 1 8.2e-06 0.00086 11.8 0.1 18 53 98 133 82 198 0.72 # 39207 # 39986 # 1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 1_45 - 260 DUF258 PF03193.11 161 1.4e-05 17.3 0.0 1 1 2e-07 2.1e-05 16.8 0.0 21 78 88 157 70 192 0.71 # 39207 # 39986 # 1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 1_10 - 718 TraG-D_C PF12696.2 128 7.9e-21 67.3 0.0 1 1 1.3e-22 1.4e-20 66.4 0.0 1 127 419 541 419 542 0.86 # 9613 # 11766 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.524 1_64 - 389 AAA_31 PF13614.1 157 1e-09 31.5 0.0 1 2 1.4e-08 1.4e-06 21.3 0.0 2 49 108 155 107 195 0.91 # 52283 # 53449 # -1 # ID=1_64;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.471 1_64 - 389 AAA_31 PF13614.1 157 1e-09 31.5 0.0 2 2 0.00018 0.019 7.9 0.1 110 152 227 268 223 272 0.84 # 52283 # 53449 # -1 # ID=1_64;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.471 1_45 - 260 NTPase_1 PF03266.10 168 0.00024 13.8 0.1 1 2 0.0016 0.17 4.5 0.1 2 30 105 133 104 153 0.83 # 39207 # 39986 # 1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 1_45 - 260 NTPase_1 PF03266.10 168 0.00024 13.8 0.1 2 2 0.00025 0.026 7.2 0.0 88 112 157 181 144 204 0.72 # 39207 # 39986 # 1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 1_59 - 228 Methyltransf_26 PF13659.1 117 1e-12 41.1 0.1 1 2 2.4e-08 2.5e-06 20.5 0.0 53 114 3 71 2 74 0.78 # 48475 # 49158 # -1 # ID=1_59;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.567 1_59 - 228 Methyltransf_26 PF13659.1 117 1e-12 41.1 0.1 2 2 9.7e-08 1e-05 18.6 0.0 4 45 167 207 164 223 0.82 # 48475 # 49158 # -1 # ID=1_59;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.567 1_7 - 1757 AAA_30 PF13604.1 196 2.5e-44 144.2 15.2 1 2 1.3e-05 0.00068 12.2 4.1 7 147 420 552 416 562 0.82 # 3627 # 8897 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.600 1_7 - 1757 AAA_30 PF13604.1 196 2.5e-44 144.2 15.2 2 2 9.9e-44 5.2e-42 136.6 2.0 1 186 968 1156 968 1163 0.93 # 3627 # 8897 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.600 1_10 - 718 AAA_30 PF13604.1 196 0.00058 12.4 0.0 1 1 2.5e-05 0.0013 11.3 0.0 21 57 188 224 180 230 0.85 # 9613 # 11766 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.524 1_28 - 876 FtsK_SpoIIIE PF01580.13 205 4.3e-06 19.3 0.2 1 2 2e-06 0.00021 13.7 0.0 39 63 476 504 463 507 0.84 # 25172 # 27799 # -1 # ID=1_28;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.540 1_28 - 876 FtsK_SpoIIIE PF01580.13 205 4.3e-06 19.3 0.2 2 2 0.0038 0.4 3.0 0.1 75 167 530 626 529 632 0.85 # 25172 # 27799 # -1 # ID=1_28;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.540 1_71 - 713 ABC_tran PF00005.22 137 4e-07 23.4 0.5 1 1 2.4e-05 0.0012 12.1 0.5 85 136 396 452 16 453 0.82 # 58264 # 60402 # -1 # ID=1_71;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.501 1_45 - 260 ABC_tran PF00005.22 137 0.00015 15.0 0.3 1 1 2.4e-05 0.0013 12.1 0.0 8 30 99 121 93 136 0.86 # 39207 # 39986 # 1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 1_59 - 228 Cons_hypoth95 PF03602.10 183 1.4e-05 17.5 0.0 1 2 0.00039 0.041 6.2 0.0 113 146 19 54 2 82 0.66 # 48475 # 49158 # -1 # ID=1_59;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.567 1_59 - 228 Cons_hypoth95 PF03602.10 183 1.4e-05 17.5 0.0 2 2 4e-05 0.0042 9.4 0.0 41 62 162 183 145 218 0.78 # 48475 # 49158 # -1 # ID=1_59;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.567 1_45 - 260 RuvB_N PF05496.7 234 0.00038 12.5 0.0 1 1 6.5e-06 0.00068 11.7 0.0 50 119 102 182 92 190 0.65 # 39207 # 39986 # 1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 1_7 - 1757 AAA_19 PF13245.1 76 2.2e-07 23.6 3.3 1 1 6.6e-09 3.4e-07 23.0 0.3 7 76 981 1047 974 1047 0.73 # 3627 # 8897 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.600 1_45 - 260 AAA_19 PF13245.1 76 0.00045 13.0 0.0 1 1 2.1e-05 0.0011 11.7 0.0 10 37 103 129 96 154 0.81 # 39207 # 39986 # 1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 1_28 - 876 AAA_10 PF12846.2 304 4e-49 160.6 0.0 1 1 2.6e-50 7e-49 159.8 0.0 1 294 479 768 479 774 0.88 # 25172 # 27799 # -1 # ID=1_28;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.540 1_10 - 718 AAA_10 PF12846.2 304 1.4e-10 34.1 0.0 1 1 9.4e-11 2.5e-09 29.9 0.0 3 296 187 494 186 500 0.68 # 9613 # 11766 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.524 1_45 - 260 AAA_10 PF12846.2 304 8.3e-06 18.3 0.7 1 2 3.8e-06 0.0001 14.8 0.1 1 33 102 134 102 171 0.89 # 39207 # 39986 # 1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 1_45 - 260 AAA_10 PF12846.2 304 8.3e-06 18.3 0.7 2 2 0.097 2.5 0.3 0.0 202 247 142 192 134 202 0.68 # 39207 # 39986 # 1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 1_77 - 815 AAA_10 PF12846.2 304 2.3e-05 16.9 0.2 1 1 4.4e-06 0.00012 14.6 0.0 1 57 343 404 343 422 0.91 # 63420 # 65864 # 1 # ID=1_77;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.315 1_45 - 260 ResIII PF04851.10 184 0.00039 13.3 0.0 1 2 6.9e-05 0.0072 9.1 0.0 8 50 89 127 49 135 0.78 # 39207 # 39986 # 1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 1_45 - 260 ResIII PF04851.10 184 0.00039 13.3 0.0 2 2 0.0088 0.92 2.3 0.0 112 163 131 181 127 202 0.72 # 39207 # 39986 # 1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 1_10 - 718 TrwB_AAD_bind PF10412.4 386 2.6e-150 493.2 0.0 1 1 6e-152 3.1e-150 493.0 0.0 2 386 172 561 171 561 0.99 # 9613 # 11766 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.524 1_28 - 876 TrwB_AAD_bind PF10412.4 386 4.2e-07 21.8 0.1 1 2 4.8e-08 2.5e-06 19.2 0.0 15 53 479 517 470 547 0.80 # 25172 # 27799 # -1 # ID=1_28;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.540 1_28 - 876 TrwB_AAD_bind PF10412.4 386 4.2e-07 21.8 0.1 2 2 0.041 2.1 -0.3 0.0 261 317 713 769 684 772 0.92 # 25172 # 27799 # -1 # ID=1_28;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.540 1_7 - 1757 AAA_11 PF13086.1 236 8.5e-05 15.1 1.6 1 1 2.7e-06 0.00028 13.4 0.0 2 75 969 1039 968 1059 0.80 # 3627 # 8897 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.600 1_10 - 718 T4SS-DNA_transf PF02534.9 469 4.5e-10 31.6 0.0 1 1 1.9e-11 1e-09 30.4 0.0 250 362 362 477 198 501 0.76 # 9613 # 11766 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.524 1_28 - 876 T4SS-DNA_transf PF02534.9 469 0.00021 12.8 0.0 1 2 0.0031 0.16 3.3 0.0 105 184 533 606 470 625 0.82 # 25172 # 27799 # -1 # ID=1_28;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.540 1_28 - 876 T4SS-DNA_transf PF02534.9 469 0.00021 12.8 0.0 2 2 0.00021 0.011 7.2 0.0 319 378 711 769 662 771 0.90 # 25172 # 27799 # -1 # ID=1_28;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.540 1_59 - 228 MethyltransfD12 PF02086.10 260 0.00085 11.8 0.0 1 2 0.037 3.9 -0.2 0.0 179 188 22 31 17 86 0.85 # 48475 # 49158 # -1 # ID=1_59;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.567 1_59 - 228 MethyltransfD12 PF02086.10 260 0.00085 11.8 0.0 2 2 4e-05 0.0042 9.5 0.0 20 46 163 189 148 197 0.78 # 48475 # 49158 # -1 # ID=1_59;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.567 1_28 - 876 Pox_A32 PF04665.7 241 0.00089 11.5 0.0 1 1 2.3e-05 0.0024 10.1 0.0 7 38 473 504 469 519 0.85 # 25172 # 27799 # -1 # ID=1_28;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.540 1_45 - 260 AAA_25 PF13481.1 194 2.6e-05 16.6 0.0 1 1 4.1e-07 4.3e-05 15.9 0.0 22 58 90 127 71 183 0.79 # 39207 # 39986 # 1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 1_59 - 228 Methyltransf_15 PF09445.5 164 0.00081 11.9 0.0 1 2 0.042 4.5 -0.2 0.0 53 79 4 29 2 33 0.89 # 48475 # 49158 # -1 # ID=1_59;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.567 1_59 - 228 Methyltransf_15 PF09445.5 164 0.00081 11.9 0.0 2 2 4.2e-05 0.0045 9.5 0.0 3 31 166 194 164 209 0.86 # 48475 # 49158 # -1 # ID=1_59;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.567 1_45 - 260 AAA_28 PF13521.1 163 0.0012 11.7 1.8 1 2 0.063 6.6 -0.4 0.1 84 110 35 63 3 82 0.67 # 39207 # 39986 # 1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 1_45 - 260 AAA_28 PF13521.1 163 0.0012 11.7 1.8 2 2 3e-05 0.0031 10.4 0.2 1 43 104 151 104 172 0.70 # 39207 # 39986 # 1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 1_45 - 260 AAA_5 PF07728.9 139 3.1e-05 16.7 0.3 1 2 3.6e-06 0.00038 13.2 0.2 1 74 104 173 104 180 0.72 # 39207 # 39986 # 1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 1_45 - 260 AAA_5 PF07728.9 139 3.1e-05 16.7 0.3 2 2 0.053 5.6 -0.3 0.0 90 123 225 258 218 259 0.63 # 39207 # 39986 # 1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/22bd0aab-c651-4cc2-bf61-d48f2f53177a # Target file: checkm_output/bins/pm659/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm659/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/22bd0aab-c651-4cc2-bf61-d48f2f53177a checkm_output/bins/pm659/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 17:08:20 2020 # [ok]