# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_44 - 508 UPF0020 PF01170.13 180 3.6e-07 22.9 0.0 1 1 1.3e-08 7.3e-07 21.9 0.0 21 116 199 296 191 313 0.77 # 38580 # 40103 # 1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.495 1_85 - 188 UPF0020 PF01170.13 180 1.5e-05 17.7 0.0 1 2 1.9e-06 0.0001 14.9 0.0 19 54 41 78 39 110 0.68 # 90006 # 90569 # 1 # ID=1_85;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.596 1_85 - 188 UPF0020 PF01170.13 180 1.5e-05 17.7 0.0 2 2 0.023 1.3 1.6 0.0 91 116 98 122 87 138 0.82 # 90006 # 90569 # 1 # ID=1_85;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.596 1_85 - 188 RrnaAD PF00398.15 262 3.1e-07 22.7 0.0 1 1 3.8e-09 4.1e-07 22.2 0.0 9 113 29 128 26 140 0.90 # 90006 # 90569 # 1 # ID=1_85;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.596 1_51 - 1912 IstB_IS21 PF01695.12 178 2.2e-05 16.9 0.0 1 1 5.1e-07 5.6e-05 15.6 0.0 46 84 439 477 421 525 0.83 # 50669 # 56404 # 1 # ID=1_51;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.443 1_69 - 389 MipZ PF09140.6 261 5.1e-06 18.7 0.4 1 2 3.5e-06 0.00038 12.6 0.0 2 47 108 153 107 157 0.87 # 76292 # 77458 # 1 # ID=1_69;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.494 1_69 - 389 MipZ PF09140.6 261 5.1e-06 18.7 0.4 2 2 0.0012 0.13 4.3 0.1 88 134 224 270 197 290 0.84 # 76292 # 77458 # 1 # ID=1_69;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.494 1_87 - 181 SSB PF00436.20 104 3e-39 126.1 0.3 1 1 3.4e-41 3.7e-39 125.9 0.3 1 99 6 105 6 113 0.96 # 91345 # 91887 # 1 # ID=1_87;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.622 1_85 - 188 Methyltransf_18 PF12847.2 112 6.6e-08 26.2 0.0 1 1 2e-09 1.1e-07 25.5 0.0 2 107 51 144 50 146 0.90 # 90006 # 90569 # 1 # ID=1_85;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.596 1_44 - 508 Methyltransf_18 PF12847.2 112 0.00053 13.6 0.0 1 1 3.2e-05 0.0017 12.0 0.0 1 87 206 304 206 347 0.75 # 38580 # 40103 # 1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.495 1_38 - 1753 UvrD_C_2 PF13538.1 104 8.6e-08 25.4 0.2 1 1 5.1e-09 5.5e-07 22.8 0.1 3 102 1339 1442 1335 1444 0.76 # 29955 # 35213 # 1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.616 1_18 - 880 DUF87 PF01935.12 229 4.9e-06 19.5 0.0 1 1 4.3e-07 2.4e-05 17.3 0.0 26 222 484 674 479 681 0.82 # 9982 # 12621 # 1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.543 1_47 - 1095 DUF87 PF01935.12 229 0.00018 14.4 2.0 1 2 2.2e-05 0.0012 11.7 0.0 31 57 348 377 345 381 0.86 # 42100 # 45384 # 1 # ID=1_47;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.495 1_47 - 1095 DUF87 PF01935.12 229 0.00018 14.4 2.0 2 2 0.046 2.5 0.8 0.6 111 154 838 911 829 961 0.66 # 42100 # 45384 # 1 # ID=1_47;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.495 1_51 - 1912 AAA_22 PF13401.1 131 2.6e-05 17.4 0.5 1 1 8.7e-06 0.00047 13.3 0.1 6 131 442 576 436 576 0.77 # 50669 # 56404 # 1 # ID=1_51;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.443 1_38 - 1753 AAA_22 PF13401.1 131 0.0003 14.0 0.0 1 2 0.011 0.62 3.2 0.0 89 121 504 535 467 537 0.72 # 29955 # 35213 # 1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.616 1_38 - 1753 AAA_22 PF13401.1 131 0.0003 14.0 0.0 2 2 0.00079 0.043 7.0 0.0 3 28 985 1010 982 1063 0.79 # 29955 # 35213 # 1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.616 1_69 - 389 ArsA_ATPase PF02374.10 305 1.9e-06 20.1 0.4 1 2 1.7e-06 0.00018 13.6 0.1 9 36 115 142 109 151 0.89 # 76292 # 77458 # 1 # ID=1_69;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.494 1_69 - 389 ArsA_ATPase PF02374.10 305 1.9e-06 20.1 0.4 2 2 0.0011 0.12 4.3 0.0 123 136 231 244 221 250 0.83 # 76292 # 77458 # 1 # ID=1_69;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.494 1_79 - 85 Exonuc_V_gamma PF04257.9 805 0.00025 12.1 0.7 1 1 2.5e-06 0.00027 12.0 0.7 152 212 12 74 1 75 0.85 # 86614 # 86868 # 1 # ID=1_79;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.522 1_69 - 389 VirC1 PF07015.6 231 7.4e-05 14.9 0.0 1 2 0.00028 0.031 6.3 0.0 4 42 109 147 107 154 0.91 # 76292 # 77458 # 1 # ID=1_69;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.494 1_69 - 389 VirC1 PF07015.6 231 7.4e-05 14.9 0.0 2 2 0.00031 0.034 6.2 0.0 84 139 235 290 222 316 0.77 # 76292 # 77458 # 1 # ID=1_69;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.494 1_37 - 771 AAA_16 PF13191.1 185 3.1e-06 20.3 0.0 1 1 2.8e-07 1.5e-05 18.0 0.0 20 56 181 218 179 254 0.78 # 27643 # 29955 # 1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.562 1_51 - 1912 AAA_16 PF13191.1 185 4.3e-05 16.6 1.0 1 1 3.5e-06 0.00019 14.5 0.2 21 120 437 539 428 606 0.65 # 50669 # 56404 # 1 # ID=1_51;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.443 1_69 - 389 CbiA PF01656.18 195 8.5e-37 119.4 0.0 1 1 1e-38 1.1e-36 119.0 0.0 2 194 110 339 109 340 0.80 # 76292 # 77458 # 1 # ID=1_69;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.494 1_44 - 508 N6_Mtase PF02384.11 311 5.4e-112 366.8 0.0 1 1 1.3e-113 7.1e-112 366.4 0.0 4 310 164 471 161 472 0.97 # 38580 # 40103 # 1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.495 1_85 - 188 N6_Mtase PF02384.11 311 0.00041 12.5 0.0 1 2 5.3e-05 0.0029 9.7 0.0 28 71 32 75 21 93 0.82 # 90006 # 90569 # 1 # ID=1_85;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.596 1_85 - 188 N6_Mtase PF02384.11 311 0.00041 12.5 0.0 2 2 0.063 3.4 -0.4 0.0 124 137 111 124 97 132 0.81 # 90006 # 90569 # 1 # ID=1_85;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.596 1_37 - 771 TraG-D_C PF12696.2 128 7.4e-20 64.2 0.0 1 1 1.6e-21 1.7e-19 63.0 0.0 1 127 419 541 419 542 0.88 # 27643 # 29955 # 1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.562 1_69 - 389 AAA_31 PF13614.1 157 1e-09 31.5 0.0 1 2 1.4e-08 1.5e-06 21.2 0.0 2 49 108 155 107 195 0.92 # 76292 # 77458 # 1 # ID=1_69;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.494 1_69 - 389 AAA_31 PF13614.1 157 1e-09 31.5 0.0 2 2 0.00018 0.02 7.9 0.1 110 152 227 268 223 272 0.84 # 76292 # 77458 # 1 # ID=1_69;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.494 1_51 - 1912 AAA_33 PF13671.1 143 0.00048 13.1 0.6 1 1 3.6e-05 0.004 10.1 0.6 3 91 444 599 443 622 0.54 # 50669 # 56404 # 1 # ID=1_51;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.443 1_85 - 188 Methyltransf_26 PF13659.1 117 7.5e-14 44.8 0.1 1 1 2.2e-15 1.2e-13 44.2 0.1 2 111 52 144 51 148 0.90 # 90006 # 90569 # 1 # ID=1_85;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.596 1_44 - 508 Methyltransf_26 PF13659.1 117 5.4e-09 29.2 0.0 1 1 1.8e-10 9.9e-09 28.3 0.0 1 116 207 348 207 349 0.81 # 38580 # 40103 # 1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.495 1_38 - 1753 AAA_30 PF13604.1 196 4.9e-45 146.5 6.4 1 2 9.3e-07 5.1e-05 15.9 1.0 9 126 423 535 421 560 0.86 # 29955 # 35213 # 1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.616 1_38 - 1753 AAA_30 PF13604.1 196 4.9e-45 146.5 6.4 2 2 3.3e-42 1.8e-40 131.6 0.4 2 186 970 1157 969 1161 0.94 # 29955 # 35213 # 1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.616 1_51 - 1912 AAA_30 PF13604.1 196 1.7e-11 37.1 0.1 1 2 2.7e-08 1.5e-06 21.0 0.0 4 104 428 524 425 539 0.78 # 50669 # 56404 # 1 # ID=1_51;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.443 1_51 - 1912 AAA_30 PF13604.1 196 1.7e-11 37.1 0.1 2 2 5.5e-06 0.0003 13.4 0.0 95 135 1382 1418 1368 1421 0.85 # 50669 # 56404 # 1 # ID=1_51;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.443 1_51 - 1912 FtsK_SpoIIIE PF01580.13 205 1.9e-06 20.5 0.0 1 1 1.9e-07 1e-05 18.1 0.0 25 87 427 485 406 491 0.78 # 50669 # 56404 # 1 # ID=1_51;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.443 1_18 - 880 FtsK_SpoIIIE PF01580.13 205 0.00012 14.6 0.0 1 1 5.4e-06 0.0003 13.3 0.0 39 63 480 506 466 508 0.85 # 9982 # 12621 # 1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.543 1_85 - 188 MTS PF05175.9 170 5.2e-11 35.2 0.0 1 1 1.3e-12 7.2e-11 34.8 0.0 24 142 43 150 38 170 0.84 # 90006 # 90569 # 1 # ID=1_85;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.596 1_44 - 508 MTS PF05175.9 170 0.00032 13.1 0.0 1 1 2e-05 0.0011 11.4 0.0 20 140 195 347 192 352 0.75 # 38580 # 40103 # 1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.495 1_44 - 508 Eco57I PF07669.6 106 1.9e-06 21.2 0.0 1 1 5.7e-08 6.2e-06 19.6 0.0 1 104 285 398 285 400 0.82 # 38580 # 40103 # 1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.495 1_51 - 1912 AAA_19 PF13245.1 76 2.3e-15 49.2 0.3 1 2 2.7e-15 1.5e-13 43.4 0.1 2 63 433 492 432 507 0.84 # 50669 # 56404 # 1 # ID=1_51;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.443 1_51 - 1912 AAA_19 PF13245.1 76 2.3e-15 49.2 0.3 2 2 0.01 0.56 3.1 0.0 26 62 1516 1550 1513 1567 0.78 # 50669 # 56404 # 1 # ID=1_51;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.443 1_38 - 1753 AAA_19 PF13245.1 76 2.5e-06 20.3 0.5 1 1 4.5e-08 2.5e-06 20.3 0.5 8 74 983 1046 975 1049 0.71 # 29955 # 35213 # 1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.616 1_85 - 188 Methyltransf_2 PF00891.13 242 0.0011 11.1 0.0 1 1 1.5e-05 0.0017 10.6 0.0 111 159 60 110 40 126 0.84 # 90006 # 90569 # 1 # ID=1_85;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.596 1_51 - 1912 Helicase_RecD PF05127.9 177 0.00017 14.3 0.0 1 2 4.7e-05 0.0051 9.5 0.0 1 49 444 491 444 554 0.75 # 50669 # 56404 # 1 # ID=1_51;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.443 1_51 - 1912 Helicase_RecD PF05127.9 177 0.00017 14.3 0.0 2 2 0.0087 0.95 2.1 0.0 28 103 1275 1393 1254 1411 0.70 # 50669 # 56404 # 1 # ID=1_51;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.443 1_18 - 880 AAA_10 PF12846.2 304 1.1e-45 149.4 0.0 1 1 4.6e-47 1.7e-45 148.7 0.0 1 294 481 773 481 779 0.85 # 9982 # 12621 # 1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.543 1_37 - 771 AAA_10 PF12846.2 304 2.3e-09 30.1 0.0 1 1 1.9e-08 6.8e-07 22.0 0.0 3 296 187 494 186 499 0.63 # 27643 # 29955 # 1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.562 1_51 - 1912 AAA_10 PF12846.2 304 0.00042 12.8 0.2 1 1 6e-05 0.0022 10.4 0.0 2 34 441 473 440 484 0.90 # 50669 # 56404 # 1 # ID=1_51;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.443 1_51 - 1912 AAA_12 PF13087.1 200 6.5e-14 44.8 0.1 1 1 2.6e-15 2.9e-13 42.6 0.1 20 198 1456 1637 1450 1639 0.82 # 50669 # 56404 # 1 # ID=1_51;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.443 1_47 - 1095 ResIII PF04851.10 184 2.6e-19 62.8 0.0 1 1 1.6e-20 8.5e-19 61.1 0.0 3 182 315 485 313 487 0.78 # 42100 # 45384 # 1 # ID=1_47;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.495 1_51 - 1912 ResIII PF04851.10 184 5.7e-05 16.0 0.0 1 1 5.8e-06 0.00032 13.6 0.0 25 106 440 524 425 565 0.69 # 50669 # 56404 # 1 # ID=1_51;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.443 1_51 - 1912 Viral_helicase1 PF01443.13 234 1.7e-06 20.7 0.0 1 2 2.6e-05 0.0029 10.1 0.0 2 70 444 513 443 519 0.60 # 50669 # 56404 # 1 # ID=1_51;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.443 1_51 - 1912 Viral_helicase1 PF01443.13 234 1.7e-06 20.7 0.0 2 2 0.00018 0.019 7.4 0.0 61 103 1379 1419 1346 1425 0.86 # 50669 # 56404 # 1 # ID=1_51;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.443 1_37 - 771 TrwB_AAD_bind PF10412.4 386 1.1e-148 488.0 0.0 1 1 2.5e-150 1.3e-148 487.6 0.0 2 386 172 561 171 561 0.99 # 27643 # 29955 # 1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.562 1_18 - 880 TrwB_AAD_bind PF10412.4 386 1.6e-05 16.6 0.2 1 1 8e-07 4.4e-05 15.2 0.0 16 91 482 553 474 569 0.71 # 9982 # 12621 # 1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.543 1_51 - 1912 AAA_11 PF13086.1 236 1.2e-22 73.6 0.8 1 2 4e-11 2.2e-09 30.2 0.3 3 134 427 590 425 647 0.63 # 50669 # 56404 # 1 # ID=1_51;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.443 1_51 - 1912 AAA_11 PF13086.1 236 1.2e-22 73.6 0.8 2 2 1.8e-14 1e-12 41.2 0.0 190 233 1378 1420 1259 1422 0.81 # 50669 # 56404 # 1 # ID=1_51;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.443 1_38 - 1753 AAA_11 PF13086.1 236 1.8e-05 17.4 3.0 1 2 1.7e-06 9.3e-05 15.1 0.0 2 72 970 1037 969 1067 0.82 # 29955 # 35213 # 1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.616 1_38 - 1753 AAA_11 PF13086.1 236 1.8e-05 17.4 3.0 2 2 0.066 3.6 0.1 0.0 3 34 1181 1211 1179 1334 0.70 # 29955 # 35213 # 1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.616 1_73 - 286 TIGR00344 TIGR00344 847 2.6e-06 18.6 0.8 1 1 3.2e-08 3.5e-06 18.2 0.8 679 778 63 159 26 174 0.79 # 80207 # 81064 # 1 # ID=1_73;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.521 1_37 - 771 T4SS-DNA_transf PF02534.9 469 1.5e-08 26.6 0.0 1 2 0.08 8.7 -2.3 0.0 130 199 262 330 253 360 0.69 # 27643 # 29955 # 1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.562 1_37 - 771 T4SS-DNA_transf PF02534.9 469 1.5e-08 26.6 0.0 2 2 3.3e-10 3.6e-08 25.3 0.0 274 393 392 507 361 559 0.74 # 27643 # 29955 # 1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.562 1_85 - 188 TIGR00755 TIGR00755 256 1e-07 24.1 0.0 1 1 1.3e-09 1.5e-07 23.7 0.0 8 105 29 123 26 128 0.89 # 90006 # 90569 # 1 # ID=1_85;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.596 1_51 - 1912 ArgK PF03308.11 267 0.00038 12.3 0.0 1 1 8.9e-06 0.00097 10.9 0.0 27 64 438 475 425 478 0.87 # 50669 # 56404 # 1 # ID=1_51;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.443 1_18 - 880 Pox_A32 PF04665.7 241 8.1e-05 15.0 0.0 1 1 1.5e-06 0.00017 14.0 0.0 6 40 474 508 470 523 0.82 # 9982 # 12621 # 1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.543 1_44 - 508 Methyltransf_23 PF13489.1 161 0.00041 13.1 0.0 1 1 1.9e-05 0.002 10.9 0.0 8 60 193 284 187 367 0.59 # 38580 # 40103 # 1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.495 1_51 - 1912 UvrD-helicase PF00580.16 315 1.8e-09 30.3 0.9 1 2 3.8e-09 4.1e-07 22.5 0.1 12 169 439 613 427 761 0.76 # 50669 # 56404 # 1 # ID=1_51;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.443 1_51 - 1912 UvrD-helicase PF00580.16 315 1.8e-09 30.3 0.9 2 2 0.00038 0.042 6.1 0.1 179 294 1283 1415 1083 1416 0.73 # 50669 # 56404 # 1 # ID=1_51;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.443 1_51 - 1912 AAA_25 PF13481.1 194 4.7e-05 15.9 0.0 1 1 1.2e-06 0.00013 14.4 0.0 31 98 438 504 424 549 0.66 # 50669 # 56404 # 1 # ID=1_51;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.443 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/d0967c2e-e2fc-401b-beb6-3fec58e4b44b # Target file: checkm_output/bins/pm657/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm657/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/d0967c2e-e2fc-401b-beb6-3fec58e4b44b checkm_output/bins/pm657/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 17:08:19 2020 # [ok]