# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 2_8 - 181 cobW PF02492.14 178 0.00077 11.7 0.0 1 1 1.3e-05 0.0012 11.1 0.0 2 22 2 22 1 30 0.79 # 6824 # 7366 # 1 # ID=2_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.571 1_18 - 402 MipZ PF09140.6 261 1.7e-06 20.0 0.0 1 2 0.0027 0.25 3.1 0.0 3 50 111 163 109 193 0.73 # 12050 # 13255 # -1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.456 1_18 - 402 MipZ PF09140.6 261 1.7e-06 20.0 0.0 2 2 8.7e-07 8e-05 14.6 0.0 87 136 233 282 220 296 0.87 # 12050 # 13255 # -1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.456 1_4 - 562 3HCDH_N PF02737.13 180 0.015 7.7 6.6 1 2 0.0086 0.79 2.1 2.8 1 30 100 129 100 133 0.93 # 873 # 2558 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_4 - 562 3HCDH_N PF02737.13 180 0.015 7.7 6.6 2 2 0.0003 0.027 6.9 0.1 2 36 273 307 272 359 0.75 # 873 # 2558 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_4 - 562 GIDA PF01134.17 392 2.4e-06 19.4 5.3 1 2 2.6e-08 2.4e-06 19.4 5.3 1 53 100 154 100 290 0.87 # 873 # 2558 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_4 - 562 GIDA PF01134.17 392 2.4e-06 19.4 5.3 2 2 0.01 0.93 1.0 0.3 349 385 390 426 376 430 0.79 # 873 # 2558 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_4 - 562 Pyr_redox_2 PF07992.9 201 6.5e-43 139.7 0.0 1 1 1.6e-44 1.5e-42 138.6 0.0 1 199 100 407 100 409 0.96 # 873 # 2558 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 2_8 - 181 AAA_22 PF13401.1 131 1.5e-05 17.9 0.0 1 1 3.3e-07 3e-05 17.0 0.0 6 37 2 34 1 177 0.84 # 6824 # 7366 # 1 # ID=2_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.571 4_4 - 478 DNA_methylase PF00145.12 335 2e-79 259.8 0.0 1 1 4.4e-81 4.1e-79 258.8 0.0 1 331 96 457 96 460 0.86 # 1205 # 2638 # 1 # ID=4_4;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=3-4bp;gc_cont=0.481 1_4 - 562 Trp_halogenase PF04820.9 454 0.0041 8.5 3.3 1 1 8.1e-05 0.0074 7.6 3.3 1 47 100 143 100 151 0.76 # 873 # 2558 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_27 - 237 AAA_15 PF13175.1 415 5e-09 28.4 0.0 1 1 7.2e-11 6.7e-09 28.0 0.0 2 46 5 48 4 67 0.90 # 19441 # 20151 # 1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.534 1_4 - 562 NAD_binding_7 PF13241.1 103 3.6e-06 20.0 1.2 1 2 1.9e-05 0.0017 11.4 0.2 9 38 100 129 96 164 0.90 # 873 # 2558 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_4 - 562 NAD_binding_7 PF13241.1 103 3.6e-06 20.0 1.2 2 2 0.00049 0.045 6.9 0.1 8 45 271 314 264 382 0.66 # 873 # 2558 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 2_8 - 181 AAA_17 PF13207.1 121 5.6e-07 23.2 0.1 1 1 1.2e-08 1.1e-06 22.3 0.1 1 77 2 94 2 173 0.54 # 6824 # 7366 # 1 # ID=2_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.571 1_27 - 237 AAA_21 PF13304.1 303 1.2e-05 18.2 0.0 1 1 2.3e-07 2.1e-05 17.3 0.0 2 24 27 49 27 83 0.83 # 19441 # 20151 # 1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.534 2_8 - 181 Cytidylate_kin2 PF13189.1 179 0.00043 13.0 0.0 1 2 6.6e-05 0.0061 9.3 0.0 1 23 2 24 2 46 0.78 # 6824 # 7366 # 1 # ID=2_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.571 2_8 - 181 Cytidylate_kin2 PF13189.1 179 0.00043 13.0 0.0 2 2 0.015 1.4 1.6 0.0 112 135 99 122 91 136 0.77 # 6824 # 7366 # 1 # ID=2_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.571 2_8 - 181 Zeta_toxin PF06414.7 201 4.2e-05 15.5 0.0 1 2 4.7e-06 0.00043 12.2 0.0 19 53 3 35 1 120 0.83 # 6824 # 7366 # 1 # ID=2_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.571 2_8 - 181 Zeta_toxin PF06414.7 201 4.2e-05 15.5 0.0 2 2 0.024 2.2 0.1 0.0 45 74 106 133 95 150 0.73 # 6824 # 7366 # 1 # ID=2_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.571 1_4 - 562 NAD_binding_8 PF13450.1 68 6.3e-05 15.8 1.2 1 1 6.9e-07 6.3e-05 15.8 1.2 1 35 103 136 103 155 0.91 # 873 # 2558 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_27 - 237 SMC_N PF02463.14 220 2.5e-10 32.7 0.0 1 1 3.9e-12 3.6e-10 32.2 0.0 2 71 4 69 3 79 0.85 # 19441 # 20151 # 1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.534 1_27 - 237 AAA_23 PF13476.1 202 1.5e-11 37.8 0.0 1 1 1.6e-13 1.5e-11 37.8 0.0 1 53 6 58 6 202 0.88 # 19441 # 20151 # 1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.534 2_8 - 181 AAA_18 PF13238.1 129 6.2e-11 35.5 0.0 1 1 1.2e-12 1.1e-10 34.7 0.0 1 126 3 134 3 137 0.71 # 6824 # 7366 # 1 # ID=2_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.571 1_18 - 402 CbiA PF01656.18 195 1.4e-18 59.8 0.0 1 1 2.8e-20 2.6e-18 58.9 0.0 1 142 111 292 111 327 0.76 # 12050 # 13255 # -1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.456 2_8 - 181 AAA_14 PF13173.1 128 0.00055 12.7 0.0 1 1 1.1e-05 0.0011 11.7 0.0 4 27 2 25 1 54 0.79 # 6824 # 7366 # 1 # ID=2_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.571 1_4 - 562 HI0933_like PF03486.9 409 4e-09 28.1 5.0 1 2 4.3e-07 3.9e-05 15.0 2.8 2 33 100 131 99 139 0.91 # 873 # 2558 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_4 - 562 HI0933_like PF03486.9 409 4e-09 28.1 5.0 2 2 1.7e-06 0.00016 13.0 0.0 83 163 286 362 281 379 0.85 # 873 # 2558 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 6_2 - 129 Ribosomal_S20p PF01649.13 84 0.00026 14.2 0.1 1 1 4.9e-06 0.00045 13.4 0.1 6 47 56 97 53 115 0.77 # 859 # 1245 # 1 # ID=6_2;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.444 1_27 - 237 AAA_29 PF13555.1 62 5e-08 25.2 0.0 1 1 9.2e-10 8.5e-08 24.5 0.0 2 49 5 50 4 57 0.82 # 19441 # 20151 # 1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.534 1_4 - 562 FAD_binding_2 PF00890.19 417 8.7e-07 20.8 5.3 1 3 9.5e-09 8.7e-07 20.8 5.3 2 32 101 131 100 138 0.91 # 873 # 2558 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_4 - 562 FAD_binding_2 PF00890.19 417 8.7e-07 20.8 5.3 2 3 0.034 3.1 -0.8 0.2 142 204 311 366 286 382 0.67 # 873 # 2558 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_4 - 562 FAD_binding_2 PF00890.19 417 8.7e-07 20.8 5.3 3 3 0.0019 0.17 3.4 0.1 373 402 374 405 368 419 0.86 # 873 # 2558 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_4 - 562 Thi4 PF01946.12 230 0.00025 13.0 0.4 1 1 6.3e-06 0.00058 11.7 0.4 19 70 100 150 95 158 0.88 # 873 # 2558 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_4 - 562 Pyr_redox_3 PF13738.1 203 1.3e-18 60.5 0.1 1 3 1.5e-06 0.00014 14.8 0.0 164 199 95 130 48 134 0.85 # 873 # 2558 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_4 - 562 Pyr_redox_3 PF13738.1 203 1.3e-18 60.5 0.1 2 3 5.8e-09 5.4e-07 22.6 0.0 115 201 219 304 174 306 0.81 # 873 # 2558 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_4 - 562 Pyr_redox_3 PF13738.1 203 1.3e-18 60.5 0.1 3 3 5.6e-08 5.2e-06 19.4 0.0 89 147 317 372 309 431 0.82 # 873 # 2558 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_18 - 402 AAA_31 PF13614.1 157 8.7e-05 15.3 0.0 1 1 5.5e-06 0.0005 12.8 0.0 108 147 235 273 230 279 0.86 # 12050 # 13255 # -1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.456 2_8 - 181 AAA_33 PF13671.1 143 5.3e-11 35.4 0.0 1 1 7.3e-13 6.7e-11 35.0 0.0 2 127 3 130 2 151 0.75 # 6824 # 7366 # 1 # ID=2_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.571 1_4 - 562 XdhC_C PF13478.1 136 0.00076 12.6 1.0 1 2 0.08 7.4 -0.3 0.1 1 29 101 129 101 163 0.86 # 873 # 2558 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_4 - 562 XdhC_C PF13478.1 136 0.00076 12.6 1.0 2 2 6.9e-05 0.0063 9.6 0.1 1 66 273 351 273 371 0.64 # 873 # 2558 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_27 - 237 DUF2813 PF11398.3 373 5.7e-05 15.0 0.3 1 2 2e-06 0.00018 13.4 0.0 11 49 12 51 3 56 0.79 # 19441 # 20151 # 1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.534 1_27 - 237 DUF2813 PF11398.3 373 5.7e-05 15.0 0.3 2 2 0.041 3.8 -0.8 0.1 94 148 126 180 118 226 0.52 # 19441 # 20151 # 1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.534 1_27 - 237 ABC_tran PF00005.22 137 8.4e-05 15.7 0.0 1 1 1.4e-06 0.00013 15.1 0.0 15 113 28 155 18 173 0.74 # 19441 # 20151 # 1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.534 1_4 - 562 K_oxygenase PF13434.1 341 3.1e-06 19.0 0.2 1 3 0.0041 0.37 2.3 0.2 187 223 95 129 86 132 0.74 # 873 # 2558 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_4 - 562 K_oxygenase PF13434.1 341 3.1e-06 19.0 0.2 2 3 2.9e-06 0.00026 12.7 0.0 130 231 217 309 200 339 0.79 # 873 # 2558 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_4 - 562 K_oxygenase PF13434.1 341 3.1e-06 19.0 0.2 3 3 0.022 2 -0.0 0.0 139 160 345 366 314 376 0.63 # 873 # 2558 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 2_8 - 181 TIGR03263 TIGR03263 180 0.00067 11.8 0.0 1 1 1.6e-05 0.0015 10.7 0.0 3 26 2 25 1 31 0.81 # 6824 # 7366 # 1 # ID=2_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.571 2_8 - 181 AAA_19 PF13245.1 76 0.00021 13.8 0.0 1 1 8.2e-06 0.00075 12.1 0.0 15 33 5 22 2 38 0.84 # 6824 # 7366 # 1 # ID=2_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.571 1_4 - 562 FAD_oxidored PF12831.2 428 5.5e-07 21.7 3.8 1 2 5.9e-09 5.5e-07 21.7 3.8 1 41 100 139 100 159 0.83 # 873 # 2558 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_4 - 562 FAD_oxidored PF12831.2 428 5.5e-07 21.7 3.8 2 2 0.01 0.92 1.2 0.0 84 120 305 341 261 364 0.71 # 873 # 2558 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_4 - 562 DAO PF01266.19 358 6.1e-12 37.8 7.5 1 2 1.9e-08 1.7e-06 19.9 1.5 2 35 101 134 100 161 0.85 # 873 # 2558 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_4 - 562 DAO PF01266.19 358 6.1e-12 37.8 7.5 2 2 7.7e-09 7.1e-07 21.1 0.5 151 239 314 400 274 529 0.80 # 873 # 2558 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_4 - 562 Pyr_redox PF00070.22 80 8.7e-20 63.8 5.4 1 2 1.2e-06 0.00011 15.4 1.5 2 31 101 130 100 132 0.95 # 873 # 2558 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_4 - 562 Pyr_redox PF00070.22 80 8.7e-20 63.8 5.4 2 2 3.2e-17 2.9e-15 49.3 0.1 1 72 272 342 272 351 0.91 # 873 # 2558 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 2_8 - 181 RNA_helicase PF00910.17 107 0.00053 13.0 0.0 1 1 9.1e-06 0.00084 12.3 0.0 1 26 3 28 3 47 0.84 # 6824 # 7366 # 1 # ID=2_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.571 2_8 - 181 UPF0079 PF02367.12 123 0.00019 13.9 0.0 1 1 3.3e-06 0.0003 13.2 0.0 17 36 2 21 1 30 0.88 # 6824 # 7366 # 1 # ID=2_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.571 1_4 - 562 AlaDh_PNT_C PF01262.16 168 7.8e-07 21.6 2.3 1 2 3.9e-06 0.00036 12.9 0.3 16 50 94 128 80 131 0.87 # 873 # 2558 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_4 - 562 AlaDh_PNT_C PF01262.16 168 7.8e-07 21.6 2.3 2 2 0.00012 0.011 8.1 0.1 19 60 269 310 260 341 0.84 # 873 # 2558 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 2_8 - 181 AAA_24 PF13479.1 213 6.6e-05 15.3 0.0 1 1 1.4e-06 0.00013 14.4 0.0 6 33 3 34 1 73 0.90 # 6824 # 7366 # 1 # ID=2_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.571 2_8 - 181 NACHT PF05729.7 166 1.4e-05 17.6 0.0 1 2 7.7e-07 7e-05 15.3 0.0 2 22 2 22 1 37 0.89 # 6824 # 7366 # 1 # ID=2_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.571 2_8 - 181 NACHT PF05729.7 166 1.4e-05 17.6 0.0 2 2 0.045 4.2 -0.2 0.0 77 91 151 177 95 179 0.61 # 6824 # 7366 # 1 # ID=2_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.571 2_8 - 181 AAA_28 PF13521.1 163 0.00013 14.8 0.0 1 1 2.9e-06 0.00027 13.7 0.0 2 30 3 34 2 165 0.89 # 6824 # 7366 # 1 # ID=2_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.571 2_8 - 181 APS_kinase PF01583.15 157 1.3e-05 17.7 0.0 1 2 7.3e-06 0.00067 12.1 0.0 4 24 2 22 1 35 0.87 # 6824 # 7366 # 1 # ID=2_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.571 2_8 - 181 APS_kinase PF01583.15 157 1.3e-05 17.7 0.0 2 2 0.0032 0.3 3.5 0.1 34 73 107 148 95 160 0.86 # 6824 # 7366 # 1 # ID=2_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.571 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/08e6af8f-a60d-4ec4-ab77-0a75004fe652 # Target file: checkm_output/bins/pm656/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm656/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/08e6af8f-a60d-4ec4-ab77-0a75004fe652 checkm_output/bins/pm656/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 17:08:19 2020 # [ok]