# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_28 - 288 DUF1776 PF08643.5 299 1.4e-06 20.3 0.0 1 1 2.2e-08 1.9e-06 19.9 0.0 105 197 94 183 43 200 0.92 # 26759 # 27622 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.441 2_12 - 260 IstB_IS21 PF01695.12 178 7.5e-66 213.6 0.0 1 1 2.2e-67 1.9e-65 212.3 0.0 2 177 56 233 55 234 0.96 # 13102 # 13881 # 1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.618 1_4 - 402 MipZ PF09140.6 261 1.6e-06 20.0 0.0 1 2 0.0027 0.23 3.1 0.0 3 50 111 163 109 193 0.73 # 2567 # 3772 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.457 1_4 - 402 MipZ PF09140.6 261 1.6e-06 20.0 0.0 2 2 8.7e-07 7.6e-05 14.6 0.0 87 136 233 282 220 296 0.87 # 2567 # 3772 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.457 3_7 - 565 3HCDH_N PF02737.13 180 0.0028 10.0 6.4 1 2 0.0047 0.41 2.9 2.4 1 30 99 128 99 134 0.93 # 4197 # 5891 # -1 # ID=3_7;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 3_7 - 565 3HCDH_N PF02737.13 180 0.0028 10.0 6.4 2 2 9e-05 0.0079 8.6 0.1 2 39 272 309 271 348 0.73 # 4197 # 5891 # -1 # ID=3_7;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 3_7 - 565 GIDA PF01134.17 392 2.2e-08 26.0 6.6 1 3 3.5e-10 3e-08 25.5 3.3 2 187 100 279 99 302 0.72 # 4197 # 5891 # -1 # ID=3_7;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 3_7 - 565 GIDA PF01134.17 392 2.2e-08 26.0 6.6 2 3 0.038 3.3 -0.9 0.0 3 31 273 301 271 315 0.84 # 4197 # 5891 # -1 # ID=3_7;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 3_7 - 565 GIDA PF01134.17 392 2.2e-08 26.0 6.6 3 3 0.018 1.6 0.1 0.1 349 385 393 429 387 433 0.77 # 4197 # 5891 # -1 # ID=3_7;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 3_7 - 565 Pyr_redox_2 PF07992.9 201 6.9e-44 142.8 0.0 1 1 3.2e-45 2.8e-43 140.8 0.0 2 199 100 410 99 412 0.96 # 4197 # 5891 # -1 # ID=3_7;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 2_12 - 260 AAA_22 PF13401.1 131 1.1e-06 21.6 0.0 1 2 4.1e-06 0.00036 13.4 0.1 4 28 101 125 98 148 0.75 # 13102 # 13881 # 1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.618 2_12 - 260 AAA_22 PF13401.1 131 1.1e-06 21.6 0.0 2 2 0.00082 0.071 6.0 0.0 77 101 151 178 124 201 0.64 # 13102 # 13881 # 1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.618 3_7 - 565 DFP PF04127.10 185 0.00068 12.0 2.4 1 2 0.00039 0.034 6.4 0.4 28 51 105 128 99 156 0.83 # 4197 # 5891 # -1 # ID=3_7;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 3_7 - 565 DFP PF04127.10 185 0.00068 12.0 2.4 2 2 0.0014 0.12 4.7 0.1 32 53 281 302 276 336 0.77 # 4197 # 5891 # -1 # ID=3_7;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 3_7 - 565 NAD_binding_7 PF13241.1 103 3e-07 23.4 1.2 1 2 5.4e-05 0.0047 9.9 0.2 9 38 99 128 96 184 0.89 # 4197 # 5891 # -1 # ID=3_7;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 3_7 - 565 NAD_binding_7 PF13241.1 103 3e-07 23.4 1.2 2 2 1.4e-05 0.0012 11.8 0.1 8 41 270 306 264 380 0.74 # 4197 # 5891 # -1 # ID=3_7;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 2_12 - 260 AAA_17 PF13207.1 121 0.00033 14.2 0.0 1 1 6.5e-06 0.00057 13.4 0.0 2 26 104 131 103 216 0.74 # 13102 # 13881 # 1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.618 2_12 - 260 PhoH PF02562.11 205 2.8e-07 22.7 0.1 1 1 5e-09 4.3e-07 22.0 0.1 14 56 96 138 84 163 0.80 # 13102 # 13881 # 1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.618 2_12 - 260 AFG1_ATPase PF03969.11 362 0.00027 12.5 0.0 1 1 5.8e-06 0.00051 11.6 0.0 64 214 103 251 81 258 0.78 # 13102 # 13881 # 1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.618 3_7 - 565 NAD_binding_8 PF13450.1 68 3e-05 16.7 1.2 1 2 3.5e-07 3e-05 16.7 1.2 1 35 102 135 102 155 0.90 # 4197 # 5891 # -1 # ID=3_7;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 3_7 - 565 NAD_binding_8 PF13450.1 68 3e-05 16.7 1.2 2 2 0.041 3.6 0.5 0.2 1 25 274 298 274 303 0.81 # 4197 # 5891 # -1 # ID=3_7;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 3_7 - 565 F420_oxidored PF03807.12 96 0.0061 9.7 4.1 1 2 0.0023 0.2 4.9 1.2 2 31 100 126 99 131 0.87 # 4197 # 5891 # -1 # ID=3_7;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 3_7 - 565 F420_oxidored PF03807.12 96 0.0061 9.7 4.1 2 2 0.0075 0.65 3.3 0.1 1 34 271 300 271 323 0.87 # 4197 # 5891 # -1 # ID=3_7;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 2_12 - 260 AAA_16 PF13191.1 185 1.3e-05 18.0 2.4 1 3 1.2e-06 0.0001 15.0 0.1 23 51 100 128 86 149 0.80 # 13102 # 13881 # 1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.618 2_12 - 260 AAA_16 PF13191.1 185 1.3e-05 18.0 2.4 2 3 0.035 3.1 0.4 0.0 124 162 143 175 125 192 0.74 # 13102 # 13881 # 1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.618 2_12 - 260 AAA_16 PF13191.1 185 1.3e-05 18.0 2.4 3 3 0.072 6.3 -0.6 0.0 38 62 217 242 207 252 0.75 # 13102 # 13881 # 1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.618 1_28 - 288 adh_short PF00106.20 167 1.7e-33 108.6 0.3 1 2 8.5e-35 7.4e-33 106.5 0.1 3 165 11 171 9 173 0.93 # 26759 # 27622 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.441 1_28 - 288 adh_short PF00106.20 167 1.7e-33 108.6 0.3 2 2 0.047 4.1 -0.0 0.0 66 110 227 274 205 279 0.66 # 26759 # 27622 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.441 4_1 - 274 AAA_13 PF13166.1 712 0.055 4.5 22.1 1 2 0.00037 0.032 5.3 4.7 406 458 37 89 14 98 0.53 # 416 # 1237 # 1 # ID=4_1;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.461 4_1 - 274 AAA_13 PF13166.1 712 0.055 4.5 22.1 2 2 0.0004 0.034 5.2 9.2 82 158 110 170 93 203 0.50 # 416 # 1237 # 1 # ID=4_1;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.461 1_4 - 402 CbiA PF01656.18 195 1.3e-18 59.8 0.0 1 1 5.6e-20 2.4e-18 58.9 0.0 1 142 111 292 111 327 0.76 # 2567 # 3772 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.457 2_12 - 260 CbiA PF01656.18 195 0.00084 11.5 0.0 1 1 2.5e-05 0.0011 11.1 0.0 3 42 105 145 104 254 0.75 # 13102 # 13881 # 1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.618 4_4 - 655 KaiC PF06745.8 227 0.00018 13.4 0.0 1 1 4e-06 0.00035 12.4 0.0 18 53 256 291 252 293 0.93 # 3219 # 5183 # 1 # ID=4_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.626 2_12 - 260 AAA_14 PF13173.1 128 3.1e-07 23.1 0.0 1 2 1.7e-08 1.5e-06 20.9 0.0 3 97 102 203 100 219 0.64 # 13102 # 13881 # 1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.618 2_12 - 260 AAA_14 PF13173.1 128 3.1e-07 23.1 0.0 2 2 0.048 4.2 0.0 0.0 14 46 215 247 212 257 0.80 # 13102 # 13881 # 1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.618 3_7 - 565 HI0933_like PF03486.9 409 1.9e-08 25.8 3.7 1 2 1.2e-06 0.0001 13.5 2.5 2 33 99 130 98 138 0.91 # 4197 # 5891 # -1 # ID=3_7;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 3_7 - 565 HI0933_like PF03486.9 409 1.9e-08 25.8 3.7 2 2 7.2e-06 0.00063 10.9 0.0 82 164 284 366 276 385 0.83 # 4197 # 5891 # -1 # ID=3_7;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_14 - 129 Ribosomal_S20p PF01649.13 84 0.00024 14.2 0.1 1 1 4.8e-06 0.00042 13.4 0.1 6 59 56 109 53 118 0.75 # 12101 # 12487 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.442 3_7 - 565 FAD_binding_2 PF00890.19 417 3.7e-06 18.6 4.7 1 3 4.3e-08 3.7e-06 18.6 4.7 2 32 100 130 99 137 0.90 # 4197 # 5891 # -1 # ID=3_7;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 3_7 - 565 FAD_binding_2 PF00890.19 417 3.7e-06 18.6 4.7 2 3 0.034 3 -0.8 0.1 143 204 311 369 297 388 0.72 # 4197 # 5891 # -1 # ID=3_7;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 3_7 - 565 FAD_binding_2 PF00890.19 417 3.7e-06 18.6 4.7 3 3 0.074 6.5 -1.9 0.0 376 402 388 408 377 424 0.82 # 4197 # 5891 # -1 # ID=3_7;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 2_12 - 260 AAA PF00004.24 132 1.8e-08 27.3 0.0 1 1 4.1e-10 3.6e-08 26.4 0.0 1 70 104 175 104 207 0.82 # 13102 # 13881 # 1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.618 2_12 - 260 Bac_DnaA PF00308.13 219 4.5e-09 28.9 0.0 1 1 7.8e-11 6.8e-09 28.4 0.0 36 136 103 201 90 209 0.84 # 13102 # 13881 # 1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.618 1_28 - 288 KR PF08659.5 181 4.6e-13 41.9 0.1 1 1 1.2e-14 1.1e-12 40.7 0.1 4 167 12 172 10 185 0.86 # 26759 # 27622 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.441 3_7 - 565 Pyr_redox_3 PF13738.1 203 1.1e-17 57.4 0.1 1 2 4.4e-14 3.9e-12 39.3 0.1 1 201 101 303 101 305 0.75 # 4197 # 5891 # -1 # ID=3_7;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 3_7 - 565 Pyr_redox_3 PF13738.1 203 1.1e-17 57.4 0.1 2 2 9e-07 7.8e-05 15.5 0.0 93 147 320 375 309 430 0.76 # 4197 # 5891 # -1 # ID=3_7;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 2_12 - 260 DUF258 PF03193.11 161 0.00018 13.4 0.0 1 1 3.7e-06 0.00032 12.6 0.0 26 59 92 125 80 153 0.82 # 13102 # 13881 # 1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.618 4_4 - 655 TraG-D_C PF12696.2 128 4.3e-09 29.0 0.0 1 1 8.3e-11 7.2e-09 28.3 0.0 1 127 465 591 465 592 0.79 # 3219 # 5183 # 1 # ID=4_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.626 1_4 - 402 AAA_31 PF13614.1 157 8.2e-05 15.3 0.0 1 1 5.5e-06 0.00048 12.8 0.0 108 147 235 273 230 279 0.86 # 2567 # 3772 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.457 2_12 - 260 NTPase_1 PF03266.10 168 0.0002 13.8 0.1 1 2 0.0015 0.13 4.6 0.1 2 30 104 132 103 143 0.82 # 13102 # 13881 # 1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.618 2_12 - 260 NTPase_1 PF03266.10 168 0.0002 13.8 0.1 2 2 0.0003 0.026 6.9 0.0 87 108 155 176 141 202 0.77 # 13102 # 13881 # 1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.618 4_4 - 655 FtsK_SpoIIIE PF01580.13 205 0.00073 11.7 0.0 1 1 2.4e-05 0.0021 10.2 0.0 14 59 231 279 220 282 0.78 # 3219 # 5183 # 1 # ID=4_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.626 2_12 - 260 ABC_tran PF00005.22 137 0.00046 13.2 0.2 1 1 2e-05 0.0018 11.3 0.1 8 31 98 121 95 132 0.86 # 13102 # 13881 # 1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.618 3_7 - 565 K_oxygenase PF13434.1 341 4.9e-06 18.3 0.0 1 3 0.0039 0.34 2.4 0.0 187 220 94 125 59 130 0.79 # 4197 # 5891 # -1 # ID=3_7;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 3_7 - 565 K_oxygenase PF13434.1 341 4.9e-06 18.3 0.0 2 3 3.3e-06 0.00029 12.5 0.0 132 231 218 308 202 332 0.82 # 4197 # 5891 # -1 # ID=3_7;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 3_7 - 565 K_oxygenase PF13434.1 341 4.9e-06 18.3 0.0 3 3 0.057 5 -1.4 0.0 132 160 346 369 314 377 0.67 # 4197 # 5891 # -1 # ID=3_7;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 2_12 - 260 AAA_19 PF13245.1 76 0.00058 12.3 0.2 1 1 2.6e-05 0.0023 10.5 0.0 11 35 103 126 95 157 0.81 # 13102 # 13881 # 1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.618 1_28 - 288 RmlD_sub_bind PF04321.12 287 0.00066 11.3 0.0 1 1 1.4e-05 0.0012 10.5 0.0 3 69 11 100 8 123 0.84 # 26759 # 27622 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.441 1_28 - 288 NAD_binding_10 PF13460.1 183 1.5e-05 17.7 0.0 1 1 3.4e-07 3e-05 16.8 0.0 3 145 13 186 12 213 0.71 # 26759 # 27622 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.441 4_4 - 655 AAA_10 PF12846.2 304 2.8e-15 49.2 0.0 1 1 8.9e-16 3.9e-14 45.4 0.0 3 293 259 539 257 547 0.78 # 3219 # 5183 # 1 # ID=4_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.626 2_12 - 260 AAA_10 PF12846.2 304 3.2e-05 16.1 0.2 1 2 0.029 1.3 1.1 0.0 106 155 28 69 4 89 0.61 # 13102 # 13881 # 1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.618 2_12 - 260 AAA_10 PF12846.2 304 3.2e-05 16.1 0.2 2 2 8.8e-06 0.00038 12.6 0.1 3 35 103 135 101 172 0.84 # 13102 # 13881 # 1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.618 1_28 - 288 adh_short_C2 PF13561.1 241 3.1e-19 62.4 0.0 1 1 4.6e-21 4e-19 62.0 0.0 5 182 17 188 15 220 0.90 # 26759 # 27622 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.441 3_7 - 565 FAD_oxidored PF12831.2 428 2.5e-06 19.4 3.6 1 1 2.9e-08 2.5e-06 19.4 3.6 2 41 100 138 99 167 0.83 # 4197 # 5891 # -1 # ID=3_7;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 3_7 - 565 DAO PF01266.19 358 3.7e-09 28.6 11.7 1 3 1.4e-08 1.2e-06 20.3 0.7 1 38 99 134 99 190 0.84 # 4197 # 5891 # -1 # ID=3_7;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 3_7 - 565 DAO PF01266.19 358 3.7e-09 28.6 11.7 2 3 0.032 2.8 -0.6 0.1 3 31 273 301 271 307 0.75 # 4197 # 5891 # -1 # ID=3_7;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 3_7 - 565 DAO PF01266.19 358 3.7e-09 28.6 11.7 3 3 9.4e-07 8.2e-05 14.3 0.5 152 208 314 372 307 433 0.74 # 4197 # 5891 # -1 # ID=3_7;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 4_1 - 274 DUF3584 PF12128.3 1201 0.016 5.2 22.4 1 2 2.8e-05 0.0024 7.9 3.3 598 657 32 91 25 98 0.90 # 416 # 1237 # 1 # ID=4_1;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.461 4_1 - 274 DUF3584 PF12128.3 1201 0.016 5.2 22.4 2 2 0.0008 0.07 3.0 11.3 608 674 111 177 105 184 0.83 # 416 # 1237 # 1 # ID=4_1;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.461 3_7 - 565 NAD_binding_9 PF13454.1 156 2.5e-05 16.8 2.8 1 3 0.0081 0.71 2.3 0.1 1 41 101 135 101 162 0.81 # 4197 # 5891 # -1 # ID=3_7;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 3_7 - 565 NAD_binding_9 PF13454.1 156 2.5e-05 16.8 2.8 2 3 0.034 2.9 0.3 0.0 134 155 218 241 202 242 0.72 # 4197 # 5891 # -1 # ID=3_7;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 3_7 - 565 NAD_binding_9 PF13454.1 156 2.5e-05 16.8 2.8 3 3 6.6e-06 0.00058 12.4 0.1 112 155 321 366 311 367 0.85 # 4197 # 5891 # -1 # ID=3_7;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 3_7 - 565 Pyr_redox PF00070.22 80 3.1e-20 65.1 6.0 1 2 1.4e-06 0.00012 15.2 1.5 1 31 99 129 99 131 0.96 # 4197 # 5891 # -1 # ID=3_7;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 3_7 - 565 Pyr_redox PF00070.22 80 3.1e-20 65.1 6.0 2 2 6.2e-18 5.4e-16 51.6 0.2 1 74 271 345 271 354 0.90 # 4197 # 5891 # -1 # ID=3_7;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 4_4 - 655 TrwB_AAD_bind PF10412.4 386 8.6e-07 20.5 0.0 1 2 4.9e-07 4.3e-05 14.9 0.0 14 57 256 300 247 313 0.85 # 3219 # 5183 # 1 # ID=4_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.626 4_4 - 655 TrwB_AAD_bind PF10412.4 386 8.6e-07 20.5 0.0 2 2 0.0015 0.13 3.5 0.0 296 368 520 593 426 607 0.84 # 3219 # 5183 # 1 # ID=4_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.626 2_12 - 260 Sigma54_activ_2 PF14532.1 138 0.00034 13.4 0.0 1 1 6.3e-06 0.00055 12.7 0.0 9 64 87 144 84 229 0.70 # 13102 # 13881 # 1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.618 3_7 - 565 AlaDh_PNT_C PF01262.16 168 2.1e-05 16.9 3.1 1 2 0.00051 0.045 6.0 0.8 15 50 92 127 89 130 0.90 # 4197 # 5891 # -1 # ID=3_7;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 3_7 - 565 AlaDh_PNT_C PF01262.16 168 2.1e-05 16.9 3.1 2 2 2.1e-05 0.0018 10.5 0.1 16 58 265 307 257 339 0.84 # 4197 # 5891 # -1 # ID=3_7;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 2_12 - 260 AAA_24 PF13479.1 213 0.0011 11.2 0.1 1 1 3e-05 0.0026 10.0 0.1 5 23 103 121 99 127 0.85 # 13102 # 13881 # 1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.618 2_12 - 260 NACHT PF05729.7 166 0.00011 14.6 0.0 1 1 2.1e-06 0.00018 13.9 0.0 3 49 104 151 102 200 0.81 # 13102 # 13881 # 1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.618 2_12 - 260 AAA_25 PF13481.1 194 6.2e-07 21.7 0.1 1 1 2.2e-08 1.9e-06 20.1 0.1 9 60 72 128 68 201 0.77 # 13102 # 13881 # 1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.618 2_12 - 260 AAA_28 PF13521.1 163 0.00022 13.9 0.0 1 1 5e-06 0.00043 13.0 0.0 1 49 103 156 103 171 0.73 # 13102 # 13881 # 1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.618 2_12 - 260 AAA_5 PF07728.9 139 1.6e-05 17.4 0.0 1 1 4.6e-07 4e-05 16.1 0.0 1 74 103 172 103 177 0.80 # 13102 # 13881 # 1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.618 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/61a6a26f-b1ad-4fb9-8f9d-b8422a551142 # Target file: checkm_output/bins/pm652/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm652/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/61a6a26f-b1ad-4fb9-8f9d-b8422a551142 checkm_output/bins/pm652/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 17:08:19 2020 # [ok]