# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_77 - 755 UPF0020 PF01170.13 180 9.5e-05 15.1 0.0 1 2 0.003 0.34 3.5 0.0 28 50 510 532 507 571 0.87 # 59805 # 62069 # -1 # ID=1_77;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.489 1_77 - 755 UPF0020 PF01170.13 180 9.5e-05 15.1 0.0 2 2 8.1e-05 0.0092 8.6 0.0 86 116 637 667 632 673 0.91 # 59805 # 62069 # -1 # ID=1_77;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.489 2_3 - 399 MipZ PF09140.6 261 6.9e-09 28.2 0.1 1 2 4.6e-05 0.0052 8.9 0.0 1 51 109 164 109 187 0.77 # 1499 # 2695 # 1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.455 2_3 - 399 MipZ PF09140.6 261 6.9e-09 28.2 0.1 2 2 1.4e-07 1.6e-05 17.2 0.0 82 135 228 281 213 289 0.86 # 1499 # 2695 # 1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.455 1_13 - 163 SSB PF00436.20 104 1.7e-42 136.7 0.2 1 1 1.9e-44 2.2e-42 136.3 0.2 1 100 6 109 6 113 0.96 # 10586 # 11074 # -1 # ID=1_13;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.501 1_77 - 755 DNA_methylase PF00145.12 335 1.9e-39 128.8 0.0 1 3 1.2e-25 1.4e-23 76.6 0.0 5 119 8 135 6 145 0.92 # 59805 # 62069 # -1 # ID=1_77;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.489 1_77 - 755 DNA_methylase PF00145.12 335 1.9e-39 128.8 0.0 2 3 1.4e-15 1.6e-13 43.5 0.0 136 308 192 406 187 416 0.57 # 59805 # 62069 # -1 # ID=1_77;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.489 1_77 - 755 DNA_methylase PF00145.12 335 1.9e-39 128.8 0.0 3 3 0.001 0.11 4.5 0.0 312 334 441 463 430 464 0.88 # 59805 # 62069 # -1 # ID=1_77;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.489 1_18 - 2256 Helicase_C PF00271.26 78 7.6e-09 28.5 0.0 1 1 1.6e-10 1.9e-08 27.2 0.0 16 78 1454 1517 1435 1517 0.86 # 14891 # 21658 # 1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.522 2_3 - 399 ArsA_ATPase PF02374.10 305 0.0005 12.2 0.0 1 1 1.2e-05 0.0013 10.8 0.0 4 52 111 166 108 255 0.74 # 1499 # 2695 # 1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.455 1_49 - 198 AAA_23 PF13476.1 202 0.079 6.3 8.1 1 2 0.032 3.7 0.9 5.1 165 199 51 93 3 115 0.52 # 39062 # 39655 # -1 # ID=1_49;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.473 1_49 - 198 AAA_23 PF13476.1 202 0.079 6.3 8.1 2 2 0.00053 0.061 6.7 0.0 14 40 113 141 104 149 0.78 # 39062 # 39655 # -1 # ID=1_49;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.473 1_49 - 198 AAA_18 PF13238.1 129 0.0012 12.3 1.9 1 2 0.017 2 1.9 0.4 49 114 39 94 8 115 0.60 # 39062 # 39655 # -1 # ID=1_49;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.473 1_49 - 198 AAA_18 PF13238.1 129 0.0012 12.3 1.9 2 2 5.3e-05 0.006 10.0 0.0 1 30 123 152 123 170 0.77 # 39062 # 39655 # -1 # ID=1_49;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.473 1_7 - 640 AAA_13 PF13166.1 712 0.012 7.0 10.2 1 2 1.4e-05 0.0016 10.0 5.7 378 466 199 282 158 283 0.66 # 2894 # 4813 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.517 1_7 - 640 AAA_13 PF13166.1 712 0.012 7.0 10.2 2 2 0.056 6.4 -1.9 0.1 369 398 564 593 528 634 0.49 # 2894 # 4813 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.517 2_3 - 399 CbiA PF01656.18 195 1.2e-20 66.8 0.0 1 1 1.8e-22 2.1e-20 66.0 0.0 1 144 111 294 111 322 0.75 # 1499 # 2695 # 1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.455 1_73 - 455 KaiC PF06745.8 227 1.3e-06 20.7 0.0 1 1 2e-08 2.3e-06 19.9 0.0 4 66 185 253 183 373 0.89 # 55249 # 56613 # -1 # ID=1_73;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.484 1_18 - 2256 N6_Mtase PF02384.11 311 2.7e-10 32.9 0.0 1 1 2.9e-11 3.3e-09 29.2 0.0 93 249 145 291 73 296 0.76 # 14891 # 21658 # 1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.522 2_3 - 399 AAA_31 PF13614.1 157 6.1e-07 22.6 0.0 1 2 0.0009 0.051 6.6 0.0 2 63 110 176 109 222 0.75 # 1499 # 2695 # 1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.455 2_3 - 399 AAA_31 PF13614.1 157 6.1e-07 22.6 0.0 2 2 6e-06 0.00034 13.7 0.0 108 138 235 265 231 277 0.85 # 1499 # 2695 # 1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.455 1_73 - 455 AAA_31 PF13614.1 157 7e-05 15.9 0.0 1 1 2.9e-06 0.00017 14.7 0.0 5 43 210 249 208 260 0.89 # 55249 # 56613 # -1 # ID=1_73;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.484 1_73 - 455 AAA_33 PF13671.1 143 0.00022 14.2 0.2 1 3 0.088 10 -0.9 0.0 46 79 134 172 102 181 0.69 # 55249 # 56613 # -1 # ID=1_73;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.484 1_73 - 455 AAA_33 PF13671.1 143 0.00022 14.2 0.2 2 3 3.9e-05 0.0045 10.0 0.0 2 42 209 248 208 327 0.60 # 55249 # 56613 # -1 # ID=1_73;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.484 1_73 - 455 AAA_33 PF13671.1 143 0.00022 14.2 0.2 3 3 0.036 4.1 0.4 0.1 88 123 350 383 331 394 0.72 # 55249 # 56613 # -1 # ID=1_73;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.484 1_73 - 455 DnaB_C PF03796.10 259 1.6e-109 357.8 0.3 1 1 2e-111 2.3e-109 357.3 0.3 1 257 188 445 188 447 0.98 # 55249 # 56613 # -1 # ID=1_73;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.484 1_18 - 2256 Methyltransf_26 PF13659.1 117 2.1e-09 30.6 1.3 1 1 1.6e-10 9.2e-09 28.5 0.0 5 116 116 225 113 226 0.81 # 14891 # 21658 # 1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.522 1_77 - 755 Methyltransf_26 PF13659.1 117 1e-05 18.6 0.0 1 1 4.8e-07 2.8e-05 17.3 0.0 1 83 511 670 511 720 0.69 # 59805 # 62069 # -1 # ID=1_77;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.489 1_73 - 455 FtsK_SpoIIIE PF01580.13 205 0.00036 13.1 0.2 1 2 8.6e-05 0.0098 8.4 0.0 40 66 208 234 184 242 0.82 # 55249 # 56613 # -1 # ID=1_73;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.484 1_73 - 455 FtsK_SpoIIIE PF01580.13 205 0.00036 13.1 0.2 2 2 0.012 1.4 1.4 0.1 71 124 319 366 313 400 0.74 # 55249 # 56613 # -1 # ID=1_73;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.484 1_18 - 2256 Eco57I PF07669.6 106 4.4e-05 16.9 0.0 1 1 1.6e-06 0.00019 14.9 0.0 3 101 174 271 172 276 0.87 # 14891 # 21658 # 1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.522 1_73 - 455 AAA_19 PF13245.1 76 0.00094 12.1 0.0 1 1 2.5e-05 0.0028 10.5 0.0 10 48 206 241 199 264 0.82 # 55249 # 56613 # -1 # ID=1_73;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.484 1_7 - 640 Kinesin-relat_1 PF12711.2 86 0.0019 11.7 5.0 1 2 0.004 0.46 4.1 0.5 8 42 196 230 191 236 0.81 # 2894 # 4813 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.517 1_7 - 640 Kinesin-relat_1 PF12711.2 86 0.0019 11.7 5.0 2 2 0.00018 0.021 8.4 0.4 7 37 251 281 246 284 0.90 # 2894 # 4813 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.517 1_77 - 755 MethyltransfD12 PF02086.10 260 1.1e-56 185.2 0.0 1 1 1.3e-58 1.4e-56 184.8 0.0 1 251 493 727 493 736 0.93 # 59805 # 62069 # -1 # ID=1_77;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.489 1_73 - 455 AAA_25 PF13481.1 194 9.1e-15 47.6 0.1 1 1 1.5e-16 1.7e-14 46.7 0.1 14 190 188 368 174 372 0.82 # 55249 # 56613 # -1 # ID=1_73;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.484 1_18 - 2256 SNF2_N PF00176.18 299 3.9e-18 58.3 0.0 1 1 8.4e-20 9.6e-18 57.0 0.0 27 293 849 1262 835 1268 0.85 # 14891 # 21658 # 1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.522 1_49 - 198 APS_kinase PF01583.15 157 0.00025 13.8 0.0 1 1 5.1e-06 0.00058 12.6 0.0 4 40 122 158 119 168 0.91 # 39062 # 39655 # -1 # ID=1_49;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.473 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/602b6693-cffc-4d3d-b1f2-197853792d29 # Target file: checkm_output/bins/pm648/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm648/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/602b6693-cffc-4d3d-b1f2-197853792d29 checkm_output/bins/pm648/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 17:08:16 2020 # [ok]