# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_21 - 228 UPF0020 PF01170.13 180 1.1e-05 17.1 0.0 1 2 0.00044 0.024 6.2 0.0 103 117 17 31 4 81 0.82 # 16975 # 17658 # 1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.564 1_21 - 228 UPF0020 PF01170.13 180 1.1e-05 17.1 0.0 2 2 6.3e-05 0.0033 9.0 0.0 28 54 163 189 158 220 0.67 # 16975 # 17658 # 1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.564 1_16 - 402 MipZ PF09140.6 261 2.4e-06 18.8 0.5 1 2 4.1e-05 0.0022 9.1 0.0 1 50 110 164 110 190 0.77 # 12674 # 13879 # 1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.455 1_16 - 402 MipZ PF09140.6 261 2.4e-06 18.8 0.5 2 2 0.00012 0.0062 7.6 0.1 90 135 237 282 227 287 0.89 # 12674 # 13879 # 1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.455 1_32 - 1757 UvrD_C_2 PF13538.1 104 7.8e-08 24.5 0.7 1 2 0.014 0.72 2.1 0.0 6 43 1227 1264 1223 1294 0.75 # 26806 # 32076 # 1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.601 1_32 - 1757 UvrD_C_2 PF13538.1 104 7.8e-08 24.5 0.7 2 2 5.2e-08 2.8e-06 19.5 0.2 3 102 1341 1444 1339 1446 0.77 # 26806 # 32076 # 1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.601 1_21 - 228 N6_N4_Mtase PF01555.13 231 1.4e-35 114.8 0.0 1 1 1.2e-34 6.3e-33 106.1 0.0 1 228 21 200 21 203 0.88 # 16975 # 17658 # 1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.564 1_31 - 763 AAA_17 PF13207.1 121 0.00018 14.3 0.0 1 1 1.2e-05 0.00066 12.5 0.0 3 27 189 217 187 262 0.68 # 24518 # 26806 # 1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.526 1_16 - 402 ArsA_ATPase PF02374.10 305 0.00017 12.7 0.0 1 1 7.8e-06 0.00041 11.4 0.0 4 136 113 255 110 257 0.67 # 12674 # 13879 # 1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.455 1_16 - 402 VirC1 PF07015.6 231 0.00032 11.8 0.0 1 2 0.015 0.79 0.7 0.0 4 26 112 134 101 143 0.82 # 12674 # 13879 # 1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.455 1_16 - 402 VirC1 PF07015.6 231 0.00032 11.8 0.0 2 2 6.8e-05 0.0036 8.4 0.0 83 154 245 322 232 361 0.70 # 12674 # 13879 # 1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.455 1_16 - 402 Fer4_NifH PF00142.13 273 6.3e-06 17.5 0.0 1 1 2.3e-07 1.2e-05 16.6 0.0 7 67 117 182 112 195 0.80 # 12674 # 13879 # 1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.455 1_31 - 763 AAA_16 PF13191.1 185 2.2e-06 19.7 0.0 1 1 2.1e-07 1.1e-05 17.5 0.0 21 60 182 222 179 263 0.81 # 24518 # 26806 # 1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.526 1_16 - 402 CbiA PF01656.18 195 9.2e-24 75.9 0.0 1 1 3e-25 1.6e-23 75.1 0.0 1 158 112 319 112 351 0.71 # 12674 # 13879 # 1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.455 1_31 - 763 TraG-D_C PF12696.2 128 4.3e-21 67.1 0.0 1 1 1.5e-22 7.8e-21 66.3 0.0 1 127 419 541 419 542 0.86 # 24518 # 26806 # 1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.526 1_16 - 402 AAA_31 PF13614.1 157 1.9e-08 26.4 0.1 1 2 1.1e-05 0.00059 11.8 0.0 2 91 111 205 110 225 0.85 # 12674 # 13879 # 1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.455 1_16 - 402 AAA_31 PF13614.1 157 1.9e-08 26.4 0.1 2 2 1.1e-05 0.00056 11.9 0.0 109 148 237 275 227 280 0.87 # 12674 # 13879 # 1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.455 1_21 - 228 Methyltransf_26 PF13659.1 117 1.6e-11 36.3 0.1 1 2 6.3e-07 3.3e-05 15.9 0.0 57 114 7 71 2 86 0.71 # 16975 # 17658 # 1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.564 1_21 - 228 Methyltransf_26 PF13659.1 117 1.6e-11 36.3 0.1 2 2 1e-07 5.4e-06 18.5 0.0 4 44 167 206 164 222 0.82 # 16975 # 17658 # 1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.564 1_32 - 1757 AAA_30 PF13604.1 196 5e-45 145.5 15.6 1 3 0.083 2.2 -0.2 0.0 41 86 223 269 219 281 0.81 # 26806 # 32076 # 1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.601 1_32 - 1757 AAA_30 PF13604.1 196 5e-45 145.5 15.6 2 3 1.1e-05 0.00029 12.4 4.5 7 146 420 551 416 561 0.82 # 26806 # 32076 # 1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.601 1_32 - 1757 AAA_30 PF13604.1 196 5e-45 145.5 15.6 3 3 7e-44 1.9e-42 137.1 1.6 1 186 968 1156 968 1162 0.94 # 26806 # 32076 # 1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.601 1_31 - 763 AAA_30 PF13604.1 196 0.00033 12.3 0.0 1 1 2.7e-05 0.00072 11.2 0.0 21 57 188 224 180 230 0.85 # 24518 # 26806 # 1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.526 1_21 - 228 Cons_hypoth95 PF03602.10 183 7.9e-06 17.4 0.0 1 2 0.0005 0.026 5.9 0.0 112 128 18 34 9 83 0.64 # 16975 # 17658 # 1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.564 1_21 - 228 Cons_hypoth95 PF03602.10 183 7.9e-06 17.4 0.0 2 2 3.9e-05 0.0021 9.5 0.0 41 62 162 183 145 219 0.78 # 16975 # 17658 # 1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.564 1_32 - 1757 AAA_19 PF13245.1 76 6.6e-08 24.3 1.6 1 1 4.5e-09 2.4e-07 22.5 0.3 7 76 981 1047 974 1047 0.74 # 26806 # 32076 # 1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.601 1_31 - 763 AAA_10 PF12846.2 304 8.1e-11 33.8 0.0 1 1 2.7e-11 1.4e-09 29.7 0.0 3 296 187 494 186 500 0.68 # 24518 # 26806 # 1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.526 1_32 - 1757 Viral_helicase1 PF01443.13 234 0.00017 13.1 0.1 1 2 0.00015 0.0081 7.6 0.0 1 111 988 1114 988 1212 0.52 # 26806 # 32076 # 1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.601 1_32 - 1757 Viral_helicase1 PF01443.13 234 0.00017 13.1 0.1 2 2 0.0066 0.35 2.3 0.0 171 234 1387 1447 1342 1447 0.63 # 26806 # 32076 # 1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.601 1_31 - 763 TrwB_AAD_bind PF10412.4 386 1.5e-150 493.0 0.0 1 1 3.5e-152 1.9e-150 492.7 0.0 2 386 172 561 171 561 0.99 # 24518 # 26806 # 1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.526 1_32 - 1757 AAA_11 PF13086.1 236 0.00017 13.2 0.0 1 1 3.1e-06 0.00017 13.2 0.0 2 75 969 1039 968 1059 0.80 # 26806 # 32076 # 1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.601 1_31 - 763 T4SS-DNA_transf PF02534.9 469 2.6e-10 31.4 0.0 1 1 1.1e-11 5.8e-10 30.2 0.0 250 361 362 476 198 500 0.76 # 24518 # 26806 # 1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.526 1_21 - 228 MethyltransfD12 PF02086.10 260 0.00027 12.4 0.0 1 2 0.025 1.3 0.3 0.0 175 188 18 31 8 43 0.82 # 16975 # 17658 # 1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.564 1_21 - 228 MethyltransfD12 PF02086.10 260 0.00027 12.4 0.0 2 2 4e-05 0.0021 9.5 0.0 20 46 163 189 148 197 0.78 # 16975 # 17658 # 1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.564 3_5 - 153 AAA_25 PF13481.1 194 7.6e-13 40.3 0.0 1 1 2.3e-14 1.2e-12 39.6 0.0 141 193 5 57 2 58 0.93 # 3667 # 4125 # -1 # ID=3_5;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.669 1_21 - 228 Methyltransf_15 PF09445.5 164 0.0004 12.0 0.0 1 2 0.042 2.2 -0.2 0.0 53 79 4 29 2 33 0.90 # 16975 # 17658 # 1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.564 1_21 - 228 Methyltransf_15 PF09445.5 164 0.0004 12.0 0.0 2 2 4.3e-05 0.0023 9.5 0.0 3 31 166 194 164 208 0.86 # 16975 # 17658 # 1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.564 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/0ba34237-cda1-4a20-ab73-2fa102161702 # Target file: checkm_output/bins/pm618/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm618/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/0ba34237-cda1-4a20-ab73-2fa102161702 checkm_output/bins/pm618/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 17:07:56 2020 # [ok]