# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 7_6 - 228 UPF0020 PF01170.13 180 3.4e-05 17.9 0.0 1 2 0.00026 0.077 7.0 0.0 103 123 17 37 4 88 0.71 # 3852 # 4535 # 1 # ID=7_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.558 7_6 - 228 UPF0020 PF01170.13 180 3.4e-05 17.9 0.0 2 2 6.2e-05 0.018 9.0 0.0 28 54 163 189 158 221 0.67 # 3852 # 4535 # 1 # ID=7_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.558 4_3 - 260 IstB_IS21 PF01695.12 178 1.4e-70 230.8 0.1 1 1 6e-72 3e-70 229.7 0.0 1 178 56 235 56 235 0.98 # 1782 # 2561 # 1 # ID=4_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 9_4 - 209 IstB_IS21 PF01695.12 178 3.9e-54 177.2 0.0 1 1 9.4e-56 4.6e-54 176.9 0.0 3 176 13 187 11 189 0.98 # 4726 # 5352 # -1 # ID=9_4;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.534 19_3 - 107 IstB_IS21 PF01695.12 178 4.2e-27 89.1 0.0 1 1 1e-28 5.1e-27 88.8 0.0 1 74 17 90 17 101 0.94 # 1024 # 1344 # 1 # ID=19_3;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.433 11_6 - 96 IstB_IS21 PF01695.12 178 2e-15 51.1 0.0 1 1 5.5e-17 2.7e-15 50.6 0.0 134 174 42 82 36 85 0.92 # 5368 # 5655 # -1 # ID=11_6;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.406 17_2 - 78 IstB_IS21 PF01695.12 178 1.5e-14 48.2 0.0 1 1 3.6e-16 1.8e-14 48.0 0.0 1 56 11 66 11 69 0.96 # 726 # 959 # 1 # ID=17_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=3-4bp;gc_cont=0.496 23_1 - 78 IstB_IS21 PF01695.12 178 1.9e-14 47.9 0.0 1 1 4.6e-16 2.3e-14 47.6 0.0 1 56 11 66 11 69 0.96 # 284 # 517 # 1 # ID=23_1;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.496 4_4 - 400 MipZ PF09140.6 261 4e-08 27.1 0.1 1 2 0.0004 0.12 5.8 0.0 2 48 110 161 109 186 0.76 # 3288 # 4487 # 1 # ID=4_4;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=3-4bp;gc_cont=0.443 4_4 - 400 MipZ PF09140.6 261 4e-08 27.1 0.1 2 2 3.8e-08 1.1e-05 19.0 0.0 88 135 234 281 216 288 0.87 # 3288 # 4487 # 1 # ID=4_4;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=3-4bp;gc_cont=0.443 4_4 - 400 YhjQ PF06564.7 244 0.0015 12.3 0.7 1 3 0.076 23 -1.3 0.0 175 199 28 53 2 95 0.53 # 3288 # 4487 # 1 # ID=4_4;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=3-4bp;gc_cont=0.443 4_4 - 400 YhjQ PF06564.7 244 0.0015 12.3 0.7 2 3 0.038 11 -0.4 0.0 9 46 116 159 110 169 0.63 # 3288 # 4487 # 1 # ID=4_4;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=3-4bp;gc_cont=0.443 4_4 - 400 YhjQ PF06564.7 244 0.0015 12.3 0.7 3 3 3.7e-05 0.011 9.5 0.0 106 183 235 311 215 322 0.78 # 3288 # 4487 # 1 # ID=4_4;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=3-4bp;gc_cont=0.443 5_6 - 950 UvrD_C_2 PF13538.1 104 9.4e-08 26.6 0.7 1 1 1e-08 1.6e-06 22.7 0.7 46 104 451 553 409 553 0.73 # 4701 # 7550 # 1 # ID=5_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.509 2_8 - 1167 UvrD_C_2 PF13538.1 104 2e-07 25.6 0.7 1 2 0.027 4 2.1 0.0 6 42 637 673 633 704 0.75 # 3123 # 6623 # 1 # ID=2_8;partial=00;start_type=GTG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.603 2_8 - 1167 UvrD_C_2 PF13538.1 104 2e-07 25.6 0.7 2 2 4.7e-08 7e-06 20.6 0.2 3 102 751 854 749 856 0.77 # 3123 # 6623 # 1 # ID=2_8;partial=00;start_type=GTG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.603 1_16 - 431 DUF87 PF01935.12 229 0.00057 14.2 0.1 1 1 7e-06 0.0021 12.3 0.0 24 45 153 174 152 183 0.92 # 7637 # 8929 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.392 4_3 - 260 AAA_22 PF13401.1 131 4.7e-06 21.2 0.2 1 1 2.4e-05 0.0012 13.4 0.1 6 99 104 176 99 203 0.57 # 1782 # 2561 # 1 # ID=4_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 5_6 - 950 AAA_22 PF13401.1 131 3.6e-05 18.4 0.0 1 2 0.00092 0.045 8.3 0.0 6 28 141 163 135 210 0.82 # 4701 # 7550 # 1 # ID=5_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.509 5_6 - 950 AAA_22 PF13401.1 131 3.6e-05 18.4 0.0 2 2 0.0033 0.16 6.5 0.0 74 124 301 349 266 355 0.73 # 4701 # 7550 # 1 # ID=5_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.509 9_4 - 209 AAA_22 PF13401.1 131 0.00016 16.3 0.4 1 2 0.00046 0.023 9.3 0.0 7 25 61 79 55 88 0.87 # 4726 # 5352 # -1 # ID=9_4;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.534 9_4 - 209 AAA_22 PF13401.1 131 0.00016 16.3 0.4 2 2 0.0098 0.49 5.0 0.1 78 113 109 150 88 167 0.62 # 4726 # 5352 # -1 # ID=9_4;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.534 1_16 - 431 AAA_22 PF13401.1 131 0.00056 14.5 0.0 1 1 0.00014 0.0069 11.0 0.0 9 66 157 235 151 280 0.70 # 7637 # 8929 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.392 19_3 - 107 AAA_22 PF13401.1 131 0.00065 14.3 0.0 1 1 3.2e-05 0.0016 13.1 0.0 5 21 64 80 60 99 0.83 # 1024 # 1344 # 1 # ID=19_3;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.433 6_9 - 436 AAA_22 PF13401.1 131 0.0051 11.4 1.2 1 1 0.00081 0.04 8.5 0.0 12 85 266 351 264 419 0.77 # 5822 # 7129 # -1 # ID=6_9;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.560 14_4 - 87 Rad60-SLD PF11976.3 72 0.00032 14.8 0.1 1 1 1.5e-06 0.00046 14.3 0.1 12 39 41 68 33 77 0.83 # 1476 # 1736 # 1 # ID=14_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.418 7_6 - 228 N6_N4_Mtase PF01555.13 231 1.3e-36 120.6 0.0 1 1 1.8e-36 5.3e-34 112.1 0.0 1 228 21 200 21 203 0.91 # 3852 # 4535 # 1 # ID=7_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.558 9_4 - 209 AAA_17 PF13207.1 121 0.0016 13.7 0.1 1 1 2.6e-05 0.0039 12.5 0.1 2 77 61 127 60 165 0.60 # 4726 # 5352 # -1 # ID=9_4;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.534 19_3 - 107 AAA_17 PF13207.1 121 0.0029 12.9 0.0 1 1 3.4e-05 0.005 12.1 0.0 2 17 66 81 65 101 0.86 # 1024 # 1344 # 1 # ID=19_3;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.433 4_4 - 400 ArsA_ATPase PF02374.10 305 0.0016 11.9 0.0 1 2 2.4e-05 0.0073 9.8 0.0 5 42 112 156 109 173 0.74 # 3288 # 4487 # 1 # ID=4_4;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=3-4bp;gc_cont=0.443 4_4 - 400 ArsA_ATPase PF02374.10 305 0.0016 11.9 0.0 2 2 0.068 20 -1.6 0.0 124 136 242 254 222 255 0.81 # 3288 # 4487 # 1 # ID=4_4;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=3-4bp;gc_cont=0.443 5_6 - 950 PhoH PF02562.11 205 1.9e-07 25.0 0.0 1 2 0.0033 0.33 4.6 0.0 22 37 142 157 131 166 0.83 # 4701 # 7550 # 1 # ID=5_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.509 5_6 - 950 PhoH PF02562.11 205 1.9e-07 25.0 0.0 2 2 3.7e-07 3.7e-05 17.5 0.0 122 173 317 369 309 394 0.83 # 4701 # 7550 # 1 # ID=5_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.509 19_3 - 107 PhoH PF02562.11 205 2.2e-07 24.8 0.0 1 1 4.5e-09 4.5e-07 23.7 0.0 11 51 55 96 43 100 0.77 # 1024 # 1344 # 1 # ID=19_3;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.433 4_3 - 260 PhoH PF02562.11 205 6.5e-07 23.2 0.2 1 1 2.5e-08 2.5e-06 21.3 0.0 11 46 94 129 83 142 0.80 # 1782 # 2561 # 1 # ID=4_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 19_3 - 107 Ras PF00071.17 162 0.0022 11.8 0.0 1 1 1.3e-05 0.004 11.0 0.0 2 28 66 92 65 104 0.85 # 1024 # 1344 # 1 # ID=19_3;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.433 9_4 - 209 AFG1_ATPase PF03969.11 362 1.3e-05 18.6 0.0 1 1 9.7e-08 1.4e-05 18.4 0.0 39 168 35 161 7 205 0.83 # 4726 # 5352 # -1 # ID=9_4;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.534 4_3 - 260 AFG1_ATPase PF03969.11 362 0.00015 15.0 0.1 1 1 4.5e-06 0.00067 12.9 0.1 63 215 103 253 43 259 0.70 # 1782 # 2561 # 1 # ID=4_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 46_2 - 155 Mur_ligase PF01225.20 83 0.00099 13.6 0.0 1 1 5.1e-06 0.0015 13.1 0.0 8 49 60 107 58 135 0.78 # 282 # 746 # 1 # ID=46_2;partial=01;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.535 2_12 - 81 Methyltransf_24 PF13578.1 106 0.0011 14.2 0.0 1 1 4.2e-06 0.0012 14.1 0.0 48 93 23 68 11 78 0.78 # 8591 # 8833 # 1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.457 5_6 - 950 Zeta_toxin PF06414.7 201 0.00056 13.5 0.1 1 2 9.6e-06 0.0029 11.2 0.0 12 46 134 168 125 175 0.74 # 4701 # 7550 # 1 # ID=5_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.509 5_6 - 950 Zeta_toxin PF06414.7 201 0.00056 13.5 0.1 2 2 0.082 24 -1.7 0.0 55 91 607 637 601 642 0.73 # 4701 # 7550 # 1 # ID=5_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.509 1_39 - 364 RNA_pol_Rpb2_45 PF10385.4 66 0.0009 13.5 0.3 1 1 1.1e-05 0.0033 11.7 0.2 10 38 294 322 286 332 0.82 # 26928 # 28019 # 1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.388 4_4 - 400 VirC1 PF07015.6 231 4.5e-05 17.0 0.0 1 2 0.0061 1.8 2.0 0.0 6 28 113 135 110 163 0.81 # 3288 # 4487 # 1 # ID=4_4;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=3-4bp;gc_cont=0.443 4_4 - 400 VirC1 PF07015.6 231 4.5e-05 17.0 0.0 2 2 3.1e-06 0.00094 12.7 0.0 51 136 210 297 206 344 0.87 # 3288 # 4487 # 1 # ID=4_4;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=3-4bp;gc_cont=0.443 1_16 - 431 Arch_ATPase PF01637.13 234 0.00014 16.0 0.0 1 1 3.5e-06 0.00035 14.8 0.0 11 129 143 253 138 264 0.63 # 7637 # 8929 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.392 9_4 - 209 Arch_ATPase PF01637.13 234 0.00027 15.1 0.2 1 2 0.00046 0.046 7.8 0.0 23 58 61 96 47 107 0.84 # 4726 # 5352 # -1 # ID=9_4;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.534 9_4 - 209 Arch_ATPase PF01637.13 234 0.00027 15.1 0.2 2 2 0.0012 0.12 6.4 0.1 97 151 101 148 92 159 0.71 # 4726 # 5352 # -1 # ID=9_4;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.534 19_3 - 107 Arch_ATPase PF01637.13 234 0.0016 12.5 0.0 1 1 2.2e-05 0.0022 12.1 0.0 7 37 50 80 48 102 0.80 # 1024 # 1344 # 1 # ID=19_3;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.433 9_4 - 209 AAA_16 PF13191.1 185 5.1e-06 21.0 0.8 1 2 1.2e-05 0.00073 14.0 0.0 20 47 56 81 41 96 0.75 # 4726 # 5352 # -1 # ID=9_4;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.534 9_4 - 209 AAA_16 PF13191.1 185 5.1e-06 21.0 0.8 2 2 0.0037 0.22 5.9 0.1 131 169 98 144 84 157 0.60 # 4726 # 5352 # -1 # ID=9_4;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.534 5_6 - 950 AAA_16 PF13191.1 185 1e-05 20.0 0.2 1 1 9.6e-07 5.7e-05 17.6 0.0 23 173 138 338 118 347 0.56 # 4701 # 7550 # 1 # ID=5_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.509 19_3 - 107 AAA_16 PF13191.1 185 0.00018 16.0 0.0 1 1 5.1e-06 0.00031 15.2 0.0 12 41 54 80 46 84 0.74 # 1024 # 1344 # 1 # ID=19_3;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.433 4_3 - 260 AAA_16 PF13191.1 185 0.0003 15.2 1.1 1 1 2e-05 0.0012 13.3 0.1 16 41 97 119 84 128 0.76 # 1782 # 2561 # 1 # ID=4_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 2_8 - 1167 AAA_16 PF13191.1 185 0.083 7.3 6.2 1 2 0.0037 0.22 5.9 0.0 23 46 394 417 377 422 0.82 # 3123 # 6623 # 1 # ID=2_8;partial=00;start_type=GTG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.603 2_8 - 1167 AAA_16 PF13191.1 185 0.083 7.3 6.2 2 2 0.047 2.8 2.3 0.1 49 120 498 583 485 640 0.61 # 3123 # 6623 # 1 # ID=2_8;partial=00;start_type=GTG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.603 22_1 - 534 AAA_23 PF13476.1 202 0.075 7.8 8.2 1 1 0.0005 0.15 6.8 8.2 123 197 13 84 2 89 0.47 # 33 # 1634 # -1 # ID=22_1;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.525 4_4 - 400 CbiA PF01656.18 195 8.2e-22 72.0 0.0 1 1 4.5e-24 1.3e-21 71.3 0.0 1 144 111 294 111 321 0.74 # 3288 # 4487 # 1 # ID=4_4;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=3-4bp;gc_cont=0.443 5_6 - 950 AAA_14 PF13173.1 128 5.2e-07 24.1 0.0 1 2 4.6e-05 0.0068 10.8 0.0 4 45 141 180 138 206 0.85 # 4701 # 7550 # 1 # ID=5_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.509 5_6 - 950 AAA_14 PF13173.1 128 5.2e-07 24.1 0.0 2 2 0.00011 0.016 9.6 0.0 30 101 278 353 263 360 0.66 # 4701 # 7550 # 1 # ID=5_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.509 4_3 - 260 AAA_14 PF13173.1 128 7.5e-06 20.3 0.0 1 1 9.5e-08 1.4e-05 19.4 0.0 2 96 102 203 101 220 0.66 # 1782 # 2561 # 1 # ID=4_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 9_4 - 209 AAA_29 PF13555.1 62 2.2e-05 18.4 0.0 1 1 2.8e-07 4.2e-05 17.5 0.0 18 57 53 93 40 96 0.80 # 4726 # 5352 # -1 # ID=9_4;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.534 19_3 - 107 AAA_29 PF13555.1 62 0.002 12.1 0.0 1 1 2.3e-05 0.0034 11.4 0.0 18 39 58 79 50 84 0.77 # 1024 # 1344 # 1 # ID=19_3;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.433 9_4 - 209 CobA_CobO_BtuR PF02572.10 172 0.0024 11.9 0.6 1 2 0.06 18 -0.6 0.1 6 35 61 90 56 94 0.84 # 4726 # 5352 # -1 # ID=9_4;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.534 9_4 - 209 CobA_CobO_BtuR PF02572.10 172 0.0024 11.9 0.6 2 2 3.4e-05 0.01 9.9 0.0 78 136 101 158 91 163 0.89 # 4726 # 5352 # -1 # ID=9_4;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.534 4_3 - 260 AAA PF00004.24 132 6.6e-07 24.0 0.0 1 1 1.2e-08 1.1e-06 23.3 0.0 1 74 105 180 105 213 0.78 # 1782 # 2561 # 1 # ID=4_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 9_4 - 209 AAA PF00004.24 132 0.00034 15.3 0.0 1 1 7e-06 0.0007 14.3 0.0 1 74 61 135 61 164 0.77 # 4726 # 5352 # -1 # ID=9_4;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.534 19_3 - 107 AAA PF00004.24 132 0.00065 14.4 0.0 1 1 1e-05 0.001 13.7 0.0 1 30 66 95 66 103 0.78 # 1024 # 1344 # 1 # ID=19_3;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.433 9_4 - 209 Bac_DnaA PF00308.13 219 3.7e-09 30.9 0.0 1 1 5.2e-11 5.2e-09 30.5 0.0 37 138 61 159 43 166 0.89 # 4726 # 5352 # -1 # ID=9_4;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.534 4_3 - 260 Bac_DnaA PF00308.13 219 4.7e-09 30.6 0.0 1 1 6.8e-11 6.8e-09 30.1 0.0 37 136 105 202 75 207 0.85 # 1782 # 2561 # 1 # ID=4_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 19_3 - 107 Bac_DnaA PF00308.13 219 0.00038 14.6 0.0 1 1 4.9e-06 0.00049 14.2 0.0 36 64 65 93 35 99 0.79 # 1024 # 1344 # 1 # ID=19_3;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.433 5_6 - 950 UvrD_C PF13361.1 351 3.9e-08 27.5 0.0 1 2 0.0068 2 2.1 0.1 2 32 381 411 380 465 0.66 # 4701 # 7550 # 1 # ID=5_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.509 5_6 - 950 UvrD_C PF13361.1 351 3.9e-08 27.5 0.0 2 2 4.7e-09 1.4e-06 22.4 0.0 293 347 476 553 471 556 0.70 # 4701 # 7550 # 1 # ID=5_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.509 4_3 - 260 Sigma54_activat PF00158.21 168 0.00072 13.5 0.1 1 1 4.6e-05 0.0046 10.9 0.1 18 48 98 128 82 199 0.76 # 1782 # 2561 # 1 # ID=4_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 19_3 - 107 Sigma54_activat PF00158.21 168 0.0016 12.4 0.0 1 1 2.5e-05 0.0025 11.7 0.0 18 42 59 83 42 97 0.79 # 1024 # 1344 # 1 # ID=19_3;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.433 9_4 - 209 Sigma54_activat PF00158.21 168 0.0018 12.2 0.0 1 1 3.2e-05 0.0032 11.4 0.0 10 44 47 80 40 96 0.78 # 4726 # 5352 # -1 # ID=9_4;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.534 19_3 - 107 DUF258 PF03193.11 161 2.9e-05 17.8 0.0 1 1 2.4e-07 3.5e-05 17.5 0.0 21 53 49 81 30 99 0.75 # 1024 # 1344 # 1 # ID=19_3;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.433 4_3 - 260 DUF258 PF03193.11 161 4e-05 17.3 0.0 1 1 4e-07 6e-05 16.7 0.0 21 78 88 157 70 192 0.71 # 1782 # 2561 # 1 # ID=4_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 4_4 - 400 AAA_31 PF13614.1 157 1.5e-07 25.9 0.1 1 2 0.00019 0.058 7.8 0.0 3 44 111 158 109 210 0.86 # 3288 # 4487 # 1 # ID=4_4;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=3-4bp;gc_cont=0.443 4_4 - 400 AAA_31 PF13614.1 157 1.5e-07 25.9 0.1 2 2 7e-07 0.00021 15.7 0.0 108 148 235 274 233 279 0.87 # 3288 # 4487 # 1 # ID=4_4;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=3-4bp;gc_cont=0.443 4_3 - 260 NTPase_1 PF03266.10 168 0.0012 13.0 0.2 1 2 0.0026 0.78 3.9 0.1 2 21 105 124 104 153 0.80 # 1782 # 2561 # 1 # ID=4_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 4_3 - 260 NTPase_1 PF03266.10 168 0.0012 13.0 0.2 2 2 0.00025 0.075 7.2 0.0 88 112 157 181 145 204 0.72 # 1782 # 2561 # 1 # ID=4_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 7_6 - 228 Methyltransf_26 PF13659.1 117 1.9e-11 38.5 0.1 1 2 1.5e-07 4.5e-05 17.9 0.0 57 114 7 71 2 74 0.72 # 3852 # 4535 # 1 # ID=7_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.558 7_6 - 228 Methyltransf_26 PF13659.1 117 1.9e-11 38.5 0.1 2 2 9.7e-08 2.9e-05 18.6 0.0 4 45 167 207 164 223 0.82 # 3852 # 4535 # 1 # ID=7_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.558 2_8 - 1167 AAA_30 PF13604.1 196 8.3e-42 137.4 1.1 1 1 1.8e-43 2.7e-41 135.7 1.1 1 187 378 567 378 571 0.94 # 3123 # 6623 # 1 # ID=2_8;partial=00;start_type=GTG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.603 5_6 - 950 AAA_30 PF13604.1 196 0.00018 15.5 0.3 1 2 0.00064 0.095 6.7 0.0 7 35 133 156 127 189 0.72 # 4701 # 7550 # 1 # ID=5_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.509 5_6 - 950 AAA_30 PF13604.1 196 0.00018 15.5 0.3 2 2 0.0011 0.16 6.0 0.0 90 133 306 353 286 414 0.85 # 4701 # 7550 # 1 # ID=5_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.509 1_38 - 581 KH_4 PF13083.1 73 0.00043 14.4 0.3 1 2 3.4e-05 0.01 10.0 0.0 24 64 286 327 273 334 0.80 # 25166 # 26908 # 1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.381 1_38 - 581 KH_4 PF13083.1 73 0.00043 14.4 0.3 2 2 0.019 5.7 1.2 0.1 38 46 432 440 428 441 0.90 # 25166 # 26908 # 1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.381 9_4 - 209 ABC_tran PF00005.22 137 0.00035 15.4 0.0 1 1 8.2e-06 0.00061 14.6 0.0 8 33 55 80 52 114 0.90 # 4726 # 5352 # -1 # ID=9_4;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.534 4_3 - 260 ABC_tran PF00005.22 137 0.00049 14.9 0.3 1 1 5.3e-05 0.0039 11.9 0.0 8 30 99 121 93 133 0.87 # 1782 # 2561 # 1 # ID=4_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 19_3 - 107 ABC_tran PF00005.22 137 0.00068 14.4 0.0 1 1 1.5e-05 0.0011 13.7 0.0 8 29 60 81 54 87 0.86 # 1024 # 1344 # 1 # ID=19_3;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.433 1_16 - 431 ABC_tran PF00005.22 137 0.00068 14.4 0.0 1 1 1.9e-05 0.0014 13.4 0.0 6 37 147 178 144 247 0.77 # 7637 # 8929 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.392 19_3 - 107 TIGR03263 TIGR03263 180 0.002 11.9 0.0 1 2 0.074 22 -1.3 0.0 138 173 19 53 7 58 0.62 # 1024 # 1344 # 1 # ID=19_3;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.433 19_3 - 107 TIGR03263 TIGR03263 180 0.002 11.9 0.0 2 2 1.8e-05 0.0054 10.5 0.0 4 33 66 95 63 100 0.84 # 1024 # 1344 # 1 # ID=19_3;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.433 1_16 - 431 ATP-synt_ab PF00006.20 215 8.1e-72 235.6 0.0 1 1 4.2e-74 1.3e-71 235.0 0.0 1 215 138 349 138 349 1.00 # 7637 # 8929 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.392 7_6 - 228 Cons_hypoth95 PF03602.10 183 3.7e-05 17.6 0.0 1 2 0.00039 0.12 6.2 0.0 112 146 18 54 9 81 0.65 # 3852 # 4535 # 1 # ID=7_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.558 7_6 - 228 Cons_hypoth95 PF03602.10 183 3.7e-05 17.6 0.0 2 2 4e-05 0.012 9.4 0.0 41 62 162 183 145 218 0.78 # 3852 # 4535 # 1 # ID=7_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.558 4_3 - 260 RuvB_N PF05496.7 234 0.00065 13.2 0.0 1 1 7.4e-06 0.0011 12.5 0.0 50 119 102 182 92 190 0.66 # 1782 # 2561 # 1 # ID=4_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 9_4 - 209 RuvB_N PF05496.7 234 0.002 11.6 0.0 1 1 2e-05 0.003 11.1 0.0 50 115 58 133 46 145 0.65 # 4726 # 5352 # -1 # ID=9_4;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.534 2_8 - 1167 AAA_19 PF13245.1 76 7.7e-07 23.3 0.2 1 1 3.2e-08 3.2e-06 21.3 0.2 7 72 391 453 384 457 0.71 # 3123 # 6623 # 1 # ID=2_8;partial=00;start_type=GTG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.603 5_6 - 950 AAA_19 PF13245.1 76 0.0012 13.0 0.0 1 1 3.9e-05 0.0038 11.4 0.0 9 35 137 164 132 188 0.77 # 4701 # 7550 # 1 # ID=5_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.509 19_3 - 107 AAA_19 PF13245.1 76 0.0017 12.6 0.0 1 1 3e-05 0.003 11.8 0.0 10 30 64 83 57 93 0.80 # 1024 # 1344 # 1 # ID=19_3;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.433 9_4 - 209 AAA_10 PF12846.2 304 1.7e-05 18.8 0.0 1 1 2.8e-07 2.1e-05 18.5 0.0 3 32 60 89 58 164 0.77 # 4726 # 5352 # -1 # ID=9_4;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.534 4_3 - 260 AAA_10 PF12846.2 304 0.00018 15.5 0.9 1 2 2.6e-05 0.0019 12.1 0.1 1 33 102 134 102 172 0.86 # 1782 # 2561 # 1 # ID=4_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 4_3 - 260 AAA_10 PF12846.2 304 0.00018 15.5 0.9 2 2 0.097 7.2 0.3 0.0 202 247 142 192 134 202 0.68 # 1782 # 2561 # 1 # ID=4_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 19_3 - 107 AAA_10 PF12846.2 304 0.00052 13.9 0.1 1 2 0.082 6.1 0.6 0.0 130 169 2 43 1 57 0.66 # 1024 # 1344 # 1 # ID=19_3;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.433 19_3 - 107 AAA_10 PF12846.2 304 0.00052 13.9 0.1 2 2 3.8e-05 0.0028 11.5 0.0 1 24 63 86 63 94 0.86 # 1024 # 1344 # 1 # ID=19_3;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.433 1_16 - 431 AAA_10 PF12846.2 304 0.00069 13.5 0.1 1 1 2.8e-05 0.0021 12.0 0.1 5 51 156 208 153 424 0.71 # 7637 # 8929 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.392 5_6 - 950 AAA_12 PF13087.1 200 2.5e-05 18.2 0.0 1 2 9.5e-05 0.028 8.2 0.1 3 90 365 451 364 466 0.77 # 4701 # 7550 # 1 # ID=5_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.509 5_6 - 950 AAA_12 PF13087.1 200 2.5e-05 18.2 0.0 2 2 9.6e-05 0.028 8.2 0.0 143 196 465 553 423 556 0.68 # 4701 # 7550 # 1 # ID=5_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.509 4_3 - 260 ResIII PF04851.10 184 0.0012 13.1 0.0 1 2 0.00018 0.027 8.7 0.0 8 50 89 127 82 135 0.71 # 1782 # 2561 # 1 # ID=4_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 4_3 - 260 ResIII PF04851.10 184 0.0012 13.1 0.0 2 2 0.018 2.7 2.2 0.0 113 163 132 181 128 203 0.71 # 1782 # 2561 # 1 # ID=4_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 19_3 - 107 ResIII PF04851.10 184 0.0017 12.6 0.0 1 1 1.7e-05 0.0025 12.1 0.0 8 51 50 89 11 99 0.79 # 1024 # 1344 # 1 # ID=19_3;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.433 5_6 - 950 Viral_helicase1 PF01443.13 234 3.6e-12 40.7 1.6 1 3 0.0014 0.2 5.5 0.0 2 23 143 166 142 204 0.79 # 4701 # 7550 # 1 # ID=5_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.509 5_6 - 950 Viral_helicase1 PF01443.13 234 3.6e-12 40.7 1.6 2 3 1.3e-10 2e-08 28.5 0.2 35 202 288 490 270 498 0.82 # 4701 # 7550 # 1 # ID=5_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.509 5_6 - 950 Viral_helicase1 PF01443.13 234 3.6e-12 40.7 1.6 3 3 0.004 0.6 4.0 0.0 212 232 532 552 524 554 0.75 # 4701 # 7550 # 1 # ID=5_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.509 2_8 - 1167 Viral_helicase1 PF01443.13 234 0.001 13.0 0.0 1 2 0.00043 0.064 7.2 0.0 1 23 398 421 398 596 0.80 # 3123 # 6623 # 1 # ID=2_8;partial=00;start_type=GTG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.603 2_8 - 1167 Viral_helicase1 PF01443.13 234 0.001 13.0 0.0 2 2 0.0059 0.88 3.4 0.0 165 234 791 857 740 857 0.61 # 3123 # 6623 # 1 # ID=2_8;partial=00;start_type=GTG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.603 5_6 - 950 DUF2075 PF09848.4 352 5.1e-07 23.4 2.0 1 3 0.00041 0.12 5.7 0.0 5 25 143 163 141 214 0.78 # 4701 # 7550 # 1 # ID=5_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.509 5_6 - 950 DUF2075 PF09848.4 352 5.1e-07 23.4 2.0 2 3 3.1e-05 0.0091 9.4 0.0 76 224 307 455 245 465 0.79 # 4701 # 7550 # 1 # ID=5_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.509 5_6 - 950 DUF2075 PF09848.4 352 5.1e-07 23.4 2.0 3 3 0.00038 0.11 5.8 0.0 316 349 521 553 510 556 0.77 # 4701 # 7550 # 1 # ID=5_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.509 9_4 - 209 DUF815 PF05673.8 250 4.7e-08 26.6 0.0 1 1 2e-10 5.8e-08 26.4 0.0 15 124 25 136 10 160 0.72 # 4726 # 5352 # -1 # ID=9_4;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.534 7_2 - 125 Methyltransf_27 PF13708.1 194 0.00044 14.3 0.1 1 1 2e-06 0.00058 13.9 0.1 16 69 18 71 3 108 0.85 # 221 # 595 # -1 # ID=7_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.419 2_8 - 1167 AAA_11 PF13086.1 236 0.00013 16.0 2.6 1 2 1.6e-06 0.00048 14.2 0.0 2 75 379 449 378 470 0.80 # 3123 # 6623 # 1 # ID=2_8;partial=00;start_type=GTG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.603 2_8 - 1167 AAA_11 PF13086.1 236 0.00013 16.0 2.6 2 2 0.096 29 -1.5 0.0 198 232 479 516 448 519 0.74 # 3123 # 6623 # 1 # ID=2_8;partial=00;start_type=GTG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.603 7_6 - 228 MethyltransfD12 PF02086.10 260 0.0013 12.6 0.0 1 2 0.015 4.5 1.0 0.0 175 188 18 31 8 92 0.82 # 3852 # 4535 # 1 # ID=7_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.558 7_6 - 228 MethyltransfD12 PF02086.10 260 0.0013 12.6 0.0 2 2 4e-05 0.012 9.5 0.0 20 46 163 189 148 197 0.78 # 3852 # 4535 # 1 # ID=7_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.558 5_6 - 950 Pox_A32 PF04665.7 241 0.0012 12.6 0.0 1 1 9.1e-06 0.0027 11.4 0.0 6 34 132 160 127 173 0.86 # 4701 # 7550 # 1 # ID=5_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.509 9_4 - 209 RNA_helicase PF00910.17 107 0.00017 16.2 0.0 1 1 2.8e-06 0.00082 14.0 0.0 1 74 61 145 61 148 0.76 # 4726 # 5352 # -1 # ID=9_4;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.534 19_3 - 107 AAA_24 PF13479.1 213 0.0016 12.5 0.0 1 1 7.1e-06 0.0021 12.1 0.0 3 23 63 83 61 96 0.82 # 1024 # 1344 # 1 # ID=19_3;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.433 5_6 - 950 UvrD-helicase PF00580.16 315 2.3e-10 34.7 0.8 1 2 3.6e-05 0.011 9.5 0.0 9 34 135 160 128 166 0.77 # 4701 # 7550 # 1 # ID=5_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.509 5_6 - 950 UvrD-helicase PF00580.16 315 2.3e-10 34.7 0.8 2 2 3.8e-09 1.1e-06 22.5 0.1 253 296 311 354 284 358 0.87 # 4701 # 7550 # 1 # ID=5_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.509 9_4 - 209 NACHT PF05729.7 166 0.00056 14.0 0.3 1 2 8e-05 0.012 9.7 0.1 3 24 61 82 59 94 0.86 # 4726 # 5352 # -1 # ID=9_4;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.534 9_4 - 209 NACHT PF05729.7 166 0.00056 14.0 0.3 2 2 0.015 2.3 2.3 0.0 72 127 110 159 90 178 0.74 # 4726 # 5352 # -1 # ID=9_4;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.534 5_6 - 950 NACHT PF05729.7 166 0.0012 12.9 0.2 1 1 5.3e-05 0.0079 10.3 0.0 3 27 142 166 140 200 0.81 # 4701 # 7550 # 1 # ID=5_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.509 9_4 - 209 AAA_25 PF13481.1 194 2.4e-05 18.2 0.2 1 1 5.3e-07 5.2e-05 17.1 0.2 28 58 53 83 33 137 0.84 # 4726 # 5352 # -1 # ID=9_4;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.534 19_3 - 107 AAA_25 PF13481.1 194 6.3e-05 16.9 0.0 1 1 8e-07 7.9e-05 16.5 0.0 20 55 49 85 31 90 0.79 # 1024 # 1344 # 1 # ID=19_3;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.433 4_3 - 260 AAA_25 PF13481.1 194 9.2e-05 16.3 0.0 1 1 1.6e-06 0.00016 15.6 0.0 22 58 90 127 71 176 0.80 # 1782 # 2561 # 1 # ID=4_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 7_6 - 228 Methyltransf_15 PF09445.5 164 0.0023 11.9 0.0 1 2 0.042 13 -0.2 0.0 53 79 4 29 2 33 0.90 # 3852 # 4535 # 1 # ID=7_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.558 7_6 - 228 Methyltransf_15 PF09445.5 164 0.0023 11.9 0.0 2 2 4.2e-05 0.013 9.5 0.0 3 31 166 194 164 209 0.86 # 3852 # 4535 # 1 # ID=7_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.558 4_3 - 260 AAA_28 PF13521.1 163 0.0042 11.5 1.6 1 2 0.063 19 -0.4 0.1 84 110 35 63 3 82 0.67 # 1782 # 2561 # 1 # ID=4_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 4_3 - 260 AAA_28 PF13521.1 163 0.0042 11.5 1.6 2 2 3.4e-05 0.01 10.3 0.2 1 42 104 150 104 172 0.70 # 1782 # 2561 # 1 # ID=4_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 4_3 - 260 AAA_5 PF07728.9 139 7.6e-05 16.9 0.1 1 1 3.7e-06 0.00055 14.1 0.1 1 74 104 173 104 180 0.75 # 1782 # 2561 # 1 # ID=4_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 19_3 - 107 AAA_5 PF07728.9 139 0.0019 12.4 0.1 1 1 3e-05 0.0045 11.2 0.1 1 16 65 80 65 85 0.89 # 1024 # 1344 # 1 # ID=19_3;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.433 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/40ed35cc-94f6-481d-8880-d168ac6d2552 # Target file: checkm_output/bins/pm617/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm617/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/40ed35cc-94f6-481d-8880-d168ac6d2552 checkm_output/bins/pm617/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 17:07:56 2020 # [ok]