# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 9_3 - 181 cobW PF02492.14 178 0.00057 11.9 0.0 1 1 1.3e-05 0.00096 11.1 0.0 2 21 2 21 1 29 0.81 # 1044 # 1586 # 1 # ID=9_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.560 7_6 - 178 MipZ PF09140.6 261 3.1e-11 35.3 0.1 1 1 1.8e-12 6.8e-11 34.2 0.0 87 140 34 87 10 97 0.92 # 2925 # 3458 # -1 # ID=7_6;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.453 1_4 - 402 MipZ PF09140.6 261 1.4e-06 20.0 0.0 1 2 0.0053 0.2 3.1 0.0 3 50 111 163 109 193 0.73 # 1786 # 2991 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.457 1_4 - 402 MipZ PF09140.6 261 1.4e-06 20.0 0.0 2 2 1.7e-06 6.6e-05 14.6 0.0 87 136 233 282 220 296 0.87 # 1786 # 2991 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.457 2_6 - 562 3HCDH_N PF02737.13 180 0.012 7.7 6.6 1 2 0.0086 0.66 2.1 2.8 1 30 100 129 100 133 0.93 # 1453 # 3138 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 2_6 - 562 3HCDH_N PF02737.13 180 0.012 7.7 6.6 2 2 0.0003 0.023 6.9 0.1 2 36 273 307 272 359 0.75 # 1453 # 3138 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 2_6 - 562 GIDA PF01134.17 392 2e-06 19.4 5.3 1 2 2.6e-08 2e-06 19.4 5.3 1 53 100 154 100 290 0.87 # 1453 # 3138 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 2_6 - 562 GIDA PF01134.17 392 2e-06 19.4 5.3 2 2 0.01 0.77 1.0 0.3 349 385 390 426 376 430 0.79 # 1453 # 3138 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 2_6 - 562 Pyr_redox_2 PF07992.9 201 5.4e-43 139.7 0.0 1 1 1.6e-44 1.2e-42 138.6 0.0 1 199 100 407 100 409 0.96 # 1453 # 3138 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 9_3 - 181 AAA_22 PF13401.1 131 1.2e-05 18.0 0.0 1 1 4.7e-07 3.6e-05 16.5 0.0 6 50 2 50 1 105 0.72 # 1044 # 1586 # 1 # ID=9_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.560 8_2 - 478 DNA_methylase PF00145.12 335 1.7e-79 259.8 0.0 1 1 4.4e-81 3.4e-79 258.8 0.0 1 331 96 457 96 460 0.86 # 410 # 1843 # -1 # ID=8_2;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=3-4bp;gc_cont=0.480 2_6 - 562 Trp_halogenase PF04820.9 454 0.0034 8.5 3.3 1 1 8.1e-05 0.0061 7.6 3.3 1 47 100 143 100 151 0.76 # 1453 # 3138 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 6_7 - 79 AAA_15 PF13175.1 415 5.1e-10 31.4 0.0 1 1 6.8e-12 5.2e-10 31.3 0.0 2 46 5 48 4 65 0.89 # 3335 # 3571 # 1 # ID=6_7;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.540 2_6 - 562 NAD_binding_7 PF13241.1 103 2.9e-06 20.0 1.2 1 2 1.9e-05 0.0014 11.4 0.2 9 38 100 129 96 164 0.90 # 1453 # 3138 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 2_6 - 562 NAD_binding_7 PF13241.1 103 2.9e-06 20.0 1.2 2 2 0.00049 0.037 6.9 0.1 8 45 271 314 264 382 0.66 # 1453 # 3138 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 9_3 - 181 AAA_17 PF13207.1 121 1.8e-06 21.3 0.0 1 1 4.8e-08 3.7e-06 20.3 0.0 1 32 2 34 2 175 0.59 # 1044 # 1586 # 1 # ID=9_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.560 6_7 - 79 AAA_21 PF13304.1 303 2.3e-06 20.2 0.0 1 1 3.4e-08 2.6e-06 20.0 0.0 2 24 27 49 26 69 0.82 # 3335 # 3571 # 1 # ID=6_7;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.540 6_7 - 79 G-alpha PF00503.15 389 0.00028 12.1 0.0 1 1 4e-06 0.0003 12.0 0.0 62 106 28 72 17 76 0.82 # 3335 # 3571 # 1 # ID=6_7;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.540 9_3 - 181 Cytidylate_kin2 PF13189.1 179 0.00077 11.9 0.0 1 2 9.1e-05 0.0069 8.8 0.0 1 22 2 23 2 44 0.81 # 1044 # 1586 # 1 # ID=9_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.560 9_3 - 181 Cytidylate_kin2 PF13189.1 179 0.00077 11.9 0.0 2 2 0.026 2 0.8 0.0 110 135 96 122 94 136 0.74 # 1044 # 1586 # 1 # ID=9_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.560 9_3 - 181 Zeta_toxin PF06414.7 201 6.1e-05 14.7 0.0 1 2 2.1e-05 0.0016 10.1 0.0 19 50 3 32 1 39 0.78 # 1044 # 1586 # 1 # ID=9_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.560 9_3 - 181 Zeta_toxin PF06414.7 201 6.1e-05 14.7 0.0 2 2 0.0045 0.34 2.4 0.0 94 123 73 102 57 160 0.77 # 1044 # 1586 # 1 # ID=9_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.560 2_6 - 562 NAD_binding_8 PF13450.1 68 5.2e-05 15.8 1.2 1 1 6.9e-07 5.2e-05 15.8 1.2 1 35 103 136 103 155 0.91 # 1453 # 3138 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 6_7 - 79 SMC_N PF02463.14 220 1.6e-11 36.4 0.0 1 1 2.2e-13 1.7e-11 36.3 0.0 2 73 4 72 3 77 0.86 # 3335 # 3571 # 1 # ID=6_7;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.540 6_7 - 79 AAA_23 PF13476.1 202 2.7e-12 39.9 0.0 1 1 3.7e-14 2.8e-12 39.9 0.0 1 51 6 56 6 73 0.90 # 3335 # 3571 # 1 # ID=6_7;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.540 9_3 - 181 AAA_18 PF13238.1 129 1.5e-09 30.8 0.0 1 1 3.9e-11 3e-09 29.8 0.0 1 126 3 134 3 137 0.76 # 1044 # 1586 # 1 # ID=9_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.560 1_4 - 402 CbiA PF01656.18 195 1.2e-18 59.8 0.0 1 1 5.6e-20 2.1e-18 58.9 0.0 1 142 111 292 111 327 0.76 # 1786 # 2991 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.457 7_6 - 178 CbiA PF01656.18 195 9.8e-10 30.6 0.0 1 1 4.5e-11 1.7e-09 29.8 0.0 80 154 32 106 3 145 0.76 # 2925 # 3458 # -1 # ID=7_6;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.453 2_6 - 562 HI0933_like PF03486.9 409 3.3e-09 28.1 5.0 1 2 4.3e-07 3.2e-05 15.0 2.8 2 33 100 131 99 139 0.91 # 1453 # 3138 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 2_6 - 562 HI0933_like PF03486.9 409 3.3e-09 28.1 5.0 2 2 1.7e-06 0.00013 13.0 0.0 83 163 286 362 281 379 0.85 # 1453 # 3138 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 6_7 - 79 AAA_29 PF13555.1 62 5.3e-09 28.1 0.0 1 1 8.6e-11 6.6e-09 27.8 0.0 2 50 5 51 4 57 0.83 # 3335 # 3571 # 1 # ID=6_7;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.540 2_6 - 562 FAD_binding_2 PF00890.19 417 7.2e-07 20.8 5.3 1 3 9.5e-09 7.2e-07 20.8 5.3 2 32 101 131 100 138 0.91 # 1453 # 3138 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 2_6 - 562 FAD_binding_2 PF00890.19 417 7.2e-07 20.8 5.3 2 3 0.034 2.6 -0.8 0.2 142 204 311 366 286 382 0.67 # 1453 # 3138 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 2_6 - 562 FAD_binding_2 PF00890.19 417 7.2e-07 20.8 5.3 3 3 0.0019 0.14 3.4 0.1 373 402 374 405 368 419 0.86 # 1453 # 3138 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 2_6 - 562 Thi4 PF01946.12 230 0.0002 13.0 0.4 1 1 6.3e-06 0.00048 11.7 0.4 19 70 100 150 95 158 0.88 # 1453 # 3138 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 2_6 - 562 Pyr_redox_3 PF13738.1 203 1.1e-18 60.5 0.1 1 3 1.5e-06 0.00011 14.8 0.0 164 199 95 130 48 134 0.85 # 1453 # 3138 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 2_6 - 562 Pyr_redox_3 PF13738.1 203 1.1e-18 60.5 0.1 2 3 5.8e-09 4.4e-07 22.6 0.0 115 201 219 304 174 306 0.81 # 1453 # 3138 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 2_6 - 562 Pyr_redox_3 PF13738.1 203 1.1e-18 60.5 0.1 3 3 5.6e-08 4.3e-06 19.4 0.0 89 147 317 372 309 431 0.82 # 1453 # 3138 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_4 - 402 AAA_31 PF13614.1 157 7.2e-05 15.3 0.0 1 1 5.5e-06 0.00041 12.8 0.0 108 147 235 273 230 279 0.86 # 1786 # 2991 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.457 9_3 - 181 AAA_33 PF13671.1 143 2.3e-10 33.0 0.0 1 1 4.3e-12 3.2e-10 32.6 0.0 2 127 3 130 2 151 0.73 # 1044 # 1586 # 1 # ID=9_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.560 2_6 - 562 XdhC_C PF13478.1 136 0.00063 12.6 1.0 1 2 0.08 6.1 -0.3 0.1 1 29 101 129 101 163 0.86 # 1453 # 3138 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 2_6 - 562 XdhC_C PF13478.1 136 0.00063 12.6 1.0 2 2 6.9e-05 0.0052 9.6 0.1 1 66 273 351 273 371 0.64 # 1453 # 3138 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 6_7 - 79 DUF2813 PF11398.3 373 1.4e-05 16.8 0.0 1 1 2.1e-07 1.6e-05 16.6 0.0 11 50 12 52 3 56 0.79 # 3335 # 3571 # 1 # ID=6_7;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.540 6_7 - 79 ABC_tran PF00005.22 137 0.00045 13.1 0.0 1 1 6.1e-06 0.00047 13.0 0.0 15 42 28 55 17 75 0.78 # 3335 # 3571 # 1 # ID=6_7;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.540 2_6 - 562 K_oxygenase PF13434.1 341 2.5e-06 19.0 0.2 1 3 0.0041 0.31 2.3 0.2 187 223 95 129 86 132 0.74 # 1453 # 3138 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 2_6 - 562 K_oxygenase PF13434.1 341 2.5e-06 19.0 0.2 2 3 2.9e-06 0.00022 12.7 0.0 130 231 217 309 200 339 0.79 # 1453 # 3138 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 2_6 - 562 K_oxygenase PF13434.1 341 2.5e-06 19.0 0.2 3 3 0.022 1.6 -0.0 0.0 139 160 345 366 314 376 0.63 # 1453 # 3138 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 6_7 - 79 DAP3 PF10236.4 309 0.00069 11.1 0.0 1 1 1e-05 0.00077 10.9 0.0 11 41 12 42 3 47 0.81 # 3335 # 3571 # 1 # ID=6_7;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.540 9_3 - 181 AAA_19 PF13245.1 76 0.00032 13.0 0.0 1 1 1.8e-05 0.0013 11.0 0.0 15 33 5 22 2 36 0.85 # 1044 # 1586 # 1 # ID=9_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.560 2_6 - 562 FAD_oxidored PF12831.2 428 4.5e-07 21.7 3.8 1 2 5.9e-09 4.5e-07 21.7 3.8 1 41 100 139 100 159 0.83 # 1453 # 3138 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 2_6 - 562 FAD_oxidored PF12831.2 428 4.5e-07 21.7 3.8 2 2 0.01 0.76 1.2 0.0 84 120 305 341 261 364 0.71 # 1453 # 3138 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 2_6 - 562 DAO PF01266.19 358 5e-12 37.8 7.5 1 2 1.9e-08 1.4e-06 19.9 1.5 2 35 101 134 100 161 0.85 # 1453 # 3138 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 2_6 - 562 DAO PF01266.19 358 5e-12 37.8 7.5 2 2 7.7e-09 5.8e-07 21.1 0.5 151 239 314 400 274 529 0.80 # 1453 # 3138 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 2_6 - 562 Pyr_redox PF00070.22 80 7.2e-20 63.8 5.4 1 2 1.2e-06 9.4e-05 15.4 1.5 2 31 101 130 100 132 0.95 # 1453 # 3138 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 2_6 - 562 Pyr_redox PF00070.22 80 7.2e-20 63.8 5.4 2 2 3.2e-17 2.4e-15 49.3 0.1 1 72 272 342 272 351 0.91 # 1453 # 3138 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 2_6 - 562 AlaDh_PNT_C PF01262.16 168 6.5e-07 21.6 2.3 1 2 3.9e-06 0.0003 12.9 0.3 16 50 94 128 80 131 0.87 # 1453 # 3138 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 2_6 - 562 AlaDh_PNT_C PF01262.16 168 6.5e-07 21.6 2.3 2 2 0.00012 0.0088 8.1 0.1 19 60 269 310 260 341 0.84 # 1453 # 3138 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 9_3 - 181 AAA_24 PF13479.1 213 7.6e-05 14.9 0.0 1 1 1.2e-06 9.4e-05 14.5 0.0 6 33 3 34 1 99 0.87 # 1044 # 1586 # 1 # ID=9_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.560 9_3 - 181 NACHT PF05729.7 166 6.2e-05 15.2 0.1 1 1 2.1e-06 0.00016 13.9 0.0 2 21 2 21 1 29 0.91 # 1044 # 1586 # 1 # ID=9_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.560 9_3 - 181 AAA_28 PF13521.1 163 0.00012 14.6 0.0 1 1 4.7e-06 0.00036 13.0 0.0 2 29 3 33 2 58 0.77 # 1044 # 1586 # 1 # ID=9_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.560 9_3 - 181 APS_kinase PF01583.15 157 9.9e-06 17.8 0.0 1 2 1e-05 0.00078 11.6 0.0 4 24 2 22 1 30 0.89 # 1044 # 1586 # 1 # ID=9_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.560 9_3 - 181 APS_kinase PF01583.15 157 9.9e-06 17.8 0.0 2 2 0.0021 0.16 4.1 0.1 34 72 107 147 91 157 0.86 # 1044 # 1586 # 1 # ID=9_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.560 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/f291ded6-e5e6-4967-9805-1bfc78de5920 # Target file: checkm_output/bins/pm615/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm615/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/f291ded6-e5e6-4967-9805-1bfc78de5920 checkm_output/bins/pm615/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 17:07:54 2020 # [ok]