# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_38 - 288 DUF1776 PF08643.5 299 7.8e-07 20.3 0.0 1 1 2.2e-08 1e-06 19.9 0.0 105 197 94 183 43 200 0.92 # 33092 # 33955 # -1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.441 1_14 - 402 MipZ PF09140.6 261 9e-07 20.0 0.0 1 2 0.0027 0.13 3.1 0.0 3 50 111 163 109 193 0.73 # 9371 # 10576 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.457 1_14 - 402 MipZ PF09140.6 261 9e-07 20.0 0.0 2 2 8.7e-07 4.2e-05 14.6 0.0 87 136 233 282 220 296 0.87 # 9371 # 10576 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.457 1_38 - 288 adh_short PF00106.20 167 9.4e-34 108.6 0.3 1 2 8.5e-35 4.1e-33 106.5 0.1 3 165 11 171 9 173 0.93 # 33092 # 33955 # -1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.441 1_38 - 288 adh_short PF00106.20 167 9.4e-34 108.6 0.3 2 2 0.047 2.3 -0.0 0.0 66 110 227 274 205 279 0.66 # 33092 # 33955 # -1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.441 1_14 - 402 CbiA PF01656.18 195 7.3e-19 59.8 0.0 1 1 2.8e-20 1.4e-18 58.9 0.0 1 142 111 292 111 327 0.76 # 9371 # 10576 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.457 1_24 - 129 Ribosomal_S20p PF01649.13 84 0.00013 14.2 0.1 1 1 4.8e-06 0.00023 13.4 0.1 6 59 56 109 53 118 0.75 # 18905 # 19291 # -1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.442 1_38 - 288 KR PF08659.5 181 2.6e-13 41.9 0.1 1 1 1.2e-14 5.8e-13 40.7 0.1 4 167 12 172 10 185 0.86 # 33092 # 33955 # -1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.441 1_14 - 402 AAA_31 PF13614.1 157 4.5e-05 15.3 0.0 1 1 5.5e-06 0.00026 12.8 0.0 108 147 235 273 230 279 0.86 # 9371 # 10576 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.457 1_38 - 288 RmlD_sub_bind PF04321.12 287 0.00036 11.3 0.0 1 1 1.4e-05 0.00065 10.5 0.0 3 69 11 100 8 123 0.84 # 33092 # 33955 # -1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.441 1_38 - 288 NAD_binding_10 PF13460.1 183 8.5e-06 17.7 0.0 1 1 3.4e-07 1.6e-05 16.8 0.0 3 145 13 186 12 213 0.71 # 33092 # 33955 # -1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.441 1_38 - 288 adh_short_C2 PF13561.1 241 1.7e-19 62.4 0.0 1 1 4.6e-21 2.2e-19 62.0 0.0 5 182 17 188 15 220 0.90 # 33092 # 33955 # -1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.441 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/9aae8698-9d6d-431d-8f12-c952ca926b94 # Target file: checkm_output/bins/pm612/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm612/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/9aae8698-9d6d-431d-8f12-c952ca926b94 checkm_output/bins/pm612/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 17:07:52 2020 # [ok]