# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_2 - 274 AAA_13 PF13166.1 712 0.01 4.5 22.1 1 2 0.00037 0.0059 5.3 4.7 406 458 37 89 14 98 0.53 # 769 # 1590 # -1 # ID=1_2;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.462 1_2 - 274 AAA_13 PF13166.1 712 0.01 4.5 22.1 2 2 0.0004 0.0063 5.2 9.2 82 158 110 170 93 203 0.50 # 769 # 1590 # -1 # ID=1_2;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.462 1_15 - 655 KaiC PF06745.8 227 3.2e-05 13.4 0.0 1 1 4e-06 6.4e-05 12.4 0.0 18 53 256 291 252 293 0.93 # 10664 # 12628 # -1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.626 1_15 - 655 TraG-D_C PF12696.2 128 7.9e-10 29.0 0.0 1 1 8.3e-11 1.3e-09 28.3 0.0 1 127 465 591 465 592 0.79 # 10664 # 12628 # -1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.626 1_15 - 655 FtsK_SpoIIIE PF01580.13 205 0.00013 11.7 0.0 1 1 2.4e-05 0.00038 10.2 0.0 14 59 231 279 220 282 0.78 # 10664 # 12628 # -1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.626 1_15 - 655 AAA_10 PF12846.2 304 5.1e-16 49.2 0.0 1 1 4.5e-16 7.1e-15 45.4 0.0 3 293 259 539 257 547 0.78 # 10664 # 12628 # -1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.626 1_2 - 274 DUF3584 PF12128.3 1201 0.0029 5.2 22.4 1 2 2.8e-05 0.00044 7.9 3.3 598 657 32 91 25 98 0.90 # 769 # 1590 # -1 # ID=1_2;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.462 1_2 - 274 DUF3584 PF12128.3 1201 0.0029 5.2 22.4 2 2 0.0008 0.013 3.0 11.3 608 674 111 177 105 184 0.83 # 769 # 1590 # -1 # ID=1_2;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.462 1_15 - 655 TrwB_AAD_bind PF10412.4 386 1.6e-07 20.5 0.0 1 2 4.9e-07 7.9e-06 14.9 0.0 14 57 256 300 247 313 0.85 # 10664 # 12628 # -1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.626 1_15 - 655 TrwB_AAD_bind PF10412.4 386 1.6e-07 20.5 0.0 2 2 0.0015 0.024 3.5 0.0 296 368 520 593 426 607 0.84 # 10664 # 12628 # -1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.626 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/fe140464-2864-4795-a8e5-0df71efee547 # Target file: checkm_output/bins/pm591/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm591/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/fe140464-2864-4795-a8e5-0df71efee547 checkm_output/bins/pm591/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 17:07:38 2020 # [ok]