#                                                                            --- full sequence --- -------------- this domain -------------   hmm coord   ali coord   env coord
# target name        accession   tlen query name           accession   qlen   E-value  score  bias   #  of  c-Evalue  i-Evalue  score  bias  from    to  from    to  from    to  acc description of target
#------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- ---------------------
3_4                  -            562 AAA_13               PF13166.1    712     0.073    1.8  21.5   1   2     0.001     0.019    3.8   4.6   406   458   325   377   302   386 0.53 # 1934 # 3619 # -1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.517
3_4                  -            562 AAA_13               PF13166.1    712     0.073    1.8  21.5   2   2   0.00098     0.018    3.9   8.8    83   158   399   458   382   495 0.50 # 1934 # 3619 # -1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.517
2_9                  -            653 KaiC                 PF06745.8    227   3.6e-05   13.4   0.0   1   1     4e-06   7.2e-05   12.4   0.0    18    53   254   289   250   291 0.93 # 3431 # 5389 # -1 # ID=2_9;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.627
2_9                  -            653 TraG-D_C             PF12696.2    128   8.9e-10   29.1   0.0   1   1   8.2e-11   1.5e-09   28.3   0.0     1   127   463   589   463   590 0.79 # 3431 # 5389 # -1 # ID=2_9;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.627
2_9                  -            653 FtsK_SpoIIIE         PF01580.13   205   0.00015   11.7   0.0   1   1   2.4e-05   0.00043   10.3   0.0    14    59   229   277   218   280 0.78 # 3431 # 5389 # -1 # ID=2_9;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.627
2_9                  -            653 AAA_10               PF12846.2    304   5.7e-16   49.2   0.0   1   1   4.4e-16     8e-15   45.4   0.0     3   293   257   537   255   545 0.78 # 3431 # 5389 # -1 # ID=2_9;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.627
3_4                  -            562 DUF3584              PF12128.3   1201     0.023    2.3  22.2   1   2   7.8e-05    0.0014    6.4   3.2   598   657   320   379   313   385 0.90 # 1934 # 3619 # -1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.517
3_4                  -            562 DUF3584              PF12128.3   1201     0.023    2.3  22.2   2   2    0.0027     0.048    1.3  11.3   608   673   399   464   394   471 0.82 # 1934 # 3619 # -1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.517
2_9                  -            653 TrwB_AAD_bind        PF10412.4    386   1.8e-07   20.5   0.0   1   2   4.9e-07   8.8e-06   14.9   0.0    14    57   254   298   245   311 0.85 # 3431 # 5389 # -1 # ID=2_9;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.627
2_9                  -            653 TrwB_AAD_bind        PF10412.4    386   1.8e-07   20.5   0.0   2   2    0.0015     0.027    3.5   0.0   296   368   518   591   424   605 0.84 # 3431 # 5389 # -1 # ID=2_9;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.627
#
# Program:         hmmsearch
# Version:         3.1b2 (February 2015)
# Pipeline mode:   SEARCH
# Query file:      /tmp/9e17fa65-4c44-4ec4-89e1-85e5c48ba883
# Target file:     checkm_output/bins/pm588/genes.faa
# Option settings: hmmsearch --domtblout checkm_output/bins/pm588/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/9e17fa65-4c44-4ec4-89e1-85e5c48ba883 checkm_output/bins/pm588/genes.faa 
# Current dir:     /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2
# Date:            Tue Jul  7 17:07:36 2020
# [ok]