# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_5 - 301 3HCDH_N PF02737.13 180 1.1e-07 23.4 0.7 1 1 1.1e-08 4.7e-07 21.3 0.7 1 40 6 45 6 116 0.91 # 2652 # 3554 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.642 1_5 - 301 GIDA PF01134.17 392 0.0022 8.6 3.4 1 1 7e-05 0.0031 8.1 3.4 2 72 7 78 6 90 0.89 # 2652 # 3554 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.642 1_5 - 301 F420_oxidored PF03807.12 96 9.5e-07 21.0 0.6 1 1 6.5e-08 2.9e-06 19.5 0.2 2 78 7 79 6 98 0.82 # 2652 # 3554 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.642 2_2 - 179 AAA_13 PF13166.1 712 0.00056 10.1 5.7 1 1 1.5e-05 0.00066 9.9 5.7 97 162 16 79 10 116 0.44 # 845 # 1381 # 1 # ID=2_2;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.439 2_5 - 655 KaiC PF06745.8 227 8.9e-05 13.4 0.0 1 1 4e-06 0.00018 12.4 0.0 18 53 256 291 252 293 0.93 # 3363 # 5327 # 1 # ID=2_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.626 1_5 - 301 NAD_binding_11 PF14833.1 122 2.1e-38 122.9 0.3 1 2 0.029 1.3 0.9 1.1 8 53 96 141 92 153 0.85 # 2652 # 3554 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.642 1_5 - 301 NAD_binding_11 PF14833.1 122 2.1e-38 122.9 0.3 2 2 4.7e-40 2.1e-38 122.9 0.3 1 121 170 289 170 290 0.98 # 2652 # 3554 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.642 2_5 - 655 TraG-D_C PF12696.2 128 2.2e-09 29.0 0.0 1 1 8.3e-11 3.6e-09 28.3 0.0 1 127 465 591 465 592 0.79 # 3363 # 5327 # 1 # ID=2_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.626 1_5 - 301 NAD_binding_2 PF03446.10 163 1.9e-41 133.3 3.7 1 1 6.4e-43 2.8e-41 132.8 3.7 2 162 5 166 4 167 0.96 # 2652 # 3554 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.642 1_5 - 301 Methyltransf_26 PF13659.1 117 0.0011 10.8 6.3 1 1 4.6e-05 0.002 9.9 6.3 13 105 14 155 6 246 0.76 # 2652 # 3554 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.642 1_5 - 301 2-Hacid_dh_C PF02826.14 178 4.7e-07 20.9 0.1 1 1 1.9e-08 8.4e-07 20.0 0.1 36 146 4 118 2 124 0.86 # 2652 # 3554 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.642 2_5 - 655 FtsK_SpoIIIE PF01580.13 205 0.00037 11.7 0.0 1 1 2.4e-05 0.001 10.2 0.0 14 59 231 279 220 282 0.78 # 3363 # 5327 # 1 # ID=2_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.626 1_5 - 301 UDPG_MGDP_dh_N PF03721.9 185 3.2e-06 18.4 0.2 1 2 2e-06 8.7e-05 13.7 0.1 2 39 6 43 5 50 0.92 # 2652 # 3554 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.642 1_5 - 301 UDPG_MGDP_dh_N PF03721.9 185 3.2e-06 18.4 0.2 2 2 0.0061 0.27 2.3 0.0 107 139 86 117 82 126 0.77 # 2652 # 3554 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.642 2_5 - 655 AAA_10 PF12846.2 304 1.4e-15 49.2 0.0 1 1 8.9e-16 2e-14 45.4 0.0 3 293 259 539 257 547 0.78 # 3363 # 5327 # 1 # ID=2_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.626 1_14 - 93 AAA_10 PF12846.2 304 9.4e-07 20.2 0.0 1 1 5.3e-08 1.2e-06 19.9 0.0 241 267 6 32 2 51 0.90 # 9584 # 9862 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.502 2_2 - 179 DUF3584 PF12128.3 1201 0.00063 8.8 7.0 1 1 1.9e-05 0.00082 8.4 7.0 608 674 16 82 12 89 0.83 # 845 # 1381 # 1 # ID=2_2;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.439 2_5 - 655 TrwB_AAD_bind PF10412.4 386 4.3e-07 20.5 0.0 1 2 4.9e-07 2.2e-05 14.9 0.0 14 57 256 300 247 313 0.85 # 3363 # 5327 # 1 # ID=2_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.626 2_5 - 655 TrwB_AAD_bind PF10412.4 386 4.3e-07 20.5 0.0 2 2 0.0015 0.065 3.5 0.0 296 368 520 593 426 607 0.84 # 3363 # 5327 # 1 # ID=2_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.626 1_5 - 301 TrkA_N PF02254.13 116 1.5e-05 16.8 0.0 1 1 8e-07 3.5e-05 15.6 0.0 1 42 7 48 7 79 0.86 # 2652 # 3554 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.642 1_5 - 301 AlaDh_PNT_C PF01262.16 168 5.8e-05 14.5 1.6 1 2 4.2e-06 0.00018 12.8 0.1 21 66 5 50 2 62 0.90 # 2652 # 3554 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.642 1_5 - 301 AlaDh_PNT_C PF01262.16 168 5.8e-05 14.5 1.6 2 2 0.028 1.2 0.4 0.2 13 42 84 113 72 117 0.84 # 2652 # 3554 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.642 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/7dbbe17e-d44d-47bb-a962-a5cfdf5ed186 # Target file: checkm_output/bins/pm586/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm586/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/7dbbe17e-d44d-47bb-a962-a5cfdf5ed186 checkm_output/bins/pm586/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 17:07:35 2020 # [ok]