# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_16 - 276 AAA_13 PF13166.1 712 0.0095 4.7 21.8 1 2 0.00029 0.0049 5.6 4.4 406 458 37 89 10 98 0.55 # 12017 # 12844 # 1 # ID=1_16;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.460 1_16 - 276 AAA_13 PF13166.1 712 0.0095 4.7 21.8 2 2 0.00037 0.0063 5.3 9.1 82 158 110 170 93 204 0.50 # 12017 # 12844 # 1 # ID=1_16;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.460 1_1 - 655 KaiC PF06745.8 227 3.4e-05 13.4 0.0 1 1 4e-06 6.8e-05 12.4 0.0 18 53 256 291 252 293 0.93 # 983 # 2947 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.626 1_1 - 655 TraG-D_C PF12696.2 128 8.4e-10 29.0 0.0 1 1 8.3e-11 1.4e-09 28.3 0.0 1 127 465 591 465 592 0.79 # 983 # 2947 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.626 1_1 - 655 FtsK_SpoIIIE PF01580.13 205 0.00014 11.7 0.0 1 1 2.4e-05 0.0004 10.2 0.0 14 59 231 279 220 282 0.78 # 983 # 2947 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.626 1_1 - 655 AAA_10 PF12846.2 304 5.4e-16 49.2 0.0 1 1 4.5e-16 7.6e-15 45.4 0.0 3 293 259 539 257 547 0.78 # 983 # 2947 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.626 1_16 - 276 DUF3584 PF12128.3 1201 0.0032 5.1 22.4 1 2 2.8e-05 0.00047 7.9 3.3 598 657 32 91 25 98 0.90 # 12017 # 12844 # 1 # ID=1_16;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.460 1_16 - 276 DUF3584 PF12128.3 1201 0.0032 5.1 22.4 2 2 0.00081 0.014 3.0 11.3 608 674 111 177 105 184 0.83 # 12017 # 12844 # 1 # ID=1_16;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.460 1_1 - 655 TrwB_AAD_bind PF10412.4 386 1.7e-07 20.5 0.0 1 2 4.9e-07 8.4e-06 14.9 0.0 14 57 256 300 247 313 0.85 # 983 # 2947 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.626 1_1 - 655 TrwB_AAD_bind PF10412.4 386 1.7e-07 20.5 0.0 2 2 0.0015 0.025 3.5 0.0 296 368 520 593 426 607 0.84 # 983 # 2947 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.626 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/785b2159-28e7-4b25-83ab-528237cf71b4 # Target file: checkm_output/bins/pm584/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm584/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/785b2159-28e7-4b25-83ab-528237cf71b4 checkm_output/bins/pm584/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 17:07:34 2020 # [ok]