# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_36 - 188 Methyltransf_12 PF08242.7 99 1.2e-05 18.8 0.0 1 1 2e-07 2.1e-05 18.0 0.0 1 99 55 144 55 144 0.86 # 25824 # 26387 # -1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.580 1_45 - 228 UPF0020 PF01170.13 180 3.8e-06 19.6 0.0 1 2 8.1e-05 0.0087 8.6 0.0 102 123 16 37 2 89 0.68 # 32103 # 32786 # -1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.573 1_45 - 228 UPF0020 PF01170.13 180 3.8e-06 19.6 0.0 2 2 5.9e-05 0.0063 9.1 0.0 28 54 163 188 158 220 0.66 # 32103 # 32786 # -1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.573 1_36 - 188 RrnaAD PF00398.15 262 3.7e-09 28.9 0.0 1 1 4.4e-11 4.7e-09 28.6 0.0 9 113 29 128 24 148 0.89 # 25824 # 26387 # -1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.580 1_58 - 244 FeoB_N PF02421.13 156 0.00065 12.0 0.1 1 1 1.1e-05 0.0012 11.2 0.1 3 33 36 63 34 95 0.86 # 45070 # 45801 # 1 # ID=1_58;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.357 1_71 - 565 3HCDH_N PF02737.13 180 0.0034 10.0 6.4 1 2 0.0047 0.51 2.9 2.4 1 30 99 128 99 134 0.93 # 53795 # 55489 # 1 # ID=1_71;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.652 1_71 - 565 3HCDH_N PF02737.13 180 0.0034 10.0 6.4 2 2 9e-05 0.0097 8.6 0.1 2 39 272 309 271 348 0.73 # 53795 # 55489 # 1 # ID=1_71;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.652 1_71 - 565 GIDA PF01134.17 392 2.7e-08 26.0 6.6 1 3 3.5e-10 3.7e-08 25.5 3.3 2 187 100 279 99 302 0.72 # 53795 # 55489 # 1 # ID=1_71;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.652 1_71 - 565 GIDA PF01134.17 392 2.7e-08 26.0 6.6 2 3 0.038 4 -0.9 0.0 3 31 273 301 271 315 0.84 # 53795 # 55489 # 1 # ID=1_71;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.652 1_71 - 565 GIDA PF01134.17 392 2.7e-08 26.0 6.6 3 3 0.018 2 0.1 0.1 349 385 393 429 387 433 0.77 # 53795 # 55489 # 1 # ID=1_71;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.652 1_34 - 180 SSB PF00436.20 104 8.4e-41 131.1 0.4 1 1 9.8e-43 1.1e-40 130.8 0.4 1 101 6 109 6 112 0.96 # 24358 # 24897 # -1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.591 1_36 - 188 Methyltransf_18 PF12847.2 112 3.2e-10 33.6 0.0 1 1 6.3e-12 6.7e-10 32.6 0.0 4 109 53 146 50 148 0.89 # 25824 # 26387 # -1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.580 1_98 - 1757 UvrD_C_2 PF13538.1 104 1.6e-07 24.5 0.7 1 2 0.013 1.4 2.2 0.0 6 44 1227 1265 1223 1295 0.74 # 77558 # 82828 # -1 # ID=1_98;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.599 1_98 - 1757 UvrD_C_2 PF13538.1 104 1.6e-07 24.5 0.7 2 2 5.2e-08 5.6e-06 19.5 0.2 3 102 1341 1444 1339 1446 0.77 # 77558 # 82828 # -1 # ID=1_98;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.599 1_71 - 565 Pyr_redox_2 PF07992.9 201 8.5e-44 142.8 0.0 1 1 3.2e-45 3.5e-43 140.8 0.0 2 199 100 410 99 412 0.96 # 53795 # 55489 # 1 # ID=1_71;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.652 1_10 - 877 DUF87 PF01935.12 229 2.6e-07 23.7 0.0 1 1 6.9e-09 7.4e-07 22.2 0.0 26 222 483 670 469 677 0.77 # 6225 # 8855 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.545 1_45 - 228 Methyltransf_11 PF08241.7 95 0.00067 13.2 0.0 1 2 0.0024 0.26 4.9 0.0 78 93 53 68 48 70 0.84 # 32103 # 32786 # -1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.573 1_45 - 228 Methyltransf_11 PF08241.7 95 0.00067 13.2 0.0 2 2 0.0014 0.15 5.7 0.0 5 54 172 220 168 226 0.82 # 32103 # 32786 # -1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.573 1_71 - 565 DFP PF04127.10 185 0.00083 12.0 2.4 1 2 0.00039 0.042 6.4 0.4 28 51 105 128 99 156 0.83 # 53795 # 55489 # 1 # ID=1_71;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.652 1_71 - 565 DFP PF04127.10 185 0.00083 12.0 2.4 2 2 0.0014 0.15 4.7 0.1 32 53 281 302 276 336 0.77 # 53795 # 55489 # 1 # ID=1_71;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.652 1_58 - 244 AAA_15 PF13175.1 415 1.9e-05 16.8 8.5 1 2 5.1e-05 0.0054 8.7 2.1 12 53 23 65 7 144 0.62 # 45070 # 45801 # 1 # ID=1_58;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.357 1_58 - 244 AAA_15 PF13175.1 415 1.9e-05 16.8 8.5 2 2 3.2e-06 0.00034 12.7 0.2 342 411 133 193 98 194 0.76 # 45070 # 45801 # 1 # ID=1_58;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.357 1_71 - 565 NAD_binding_7 PF13241.1 103 3.6e-07 23.4 1.2 1 2 5.4e-05 0.0058 9.9 0.2 9 38 99 128 96 184 0.89 # 53795 # 55489 # 1 # ID=1_71;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.652 1_71 - 565 NAD_binding_7 PF13241.1 103 3.6e-07 23.4 1.2 2 2 1.4e-05 0.0015 11.8 0.1 8 41 270 306 264 380 0.74 # 53795 # 55489 # 1 # ID=1_71;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.652 1_45 - 228 N6_N4_Mtase PF01555.13 231 1.8e-36 118.8 0.0 1 1 7.2e-36 7.8e-34 110.1 0.0 1 228 21 200 21 203 0.89 # 32103 # 32786 # -1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.573 1_99 - 745 AAA_17 PF13207.1 121 0.00035 14.4 0.0 1 1 1.2e-05 0.0013 12.6 0.0 3 27 189 217 187 262 0.68 # 82828 # 85062 # -1 # ID=1_99;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.528 1_58 - 244 AAA_21 PF13304.1 303 6e-15 48.9 3.6 1 2 1.6e-06 0.00017 14.6 1.7 2 26 36 61 35 131 0.65 # 45070 # 45801 # 1 # ID=1_58;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.357 1_58 - 244 AAA_21 PF13304.1 303 6e-15 48.9 3.6 2 2 1.4e-12 1.5e-10 34.5 0.0 189 297 120 192 97 197 0.80 # 45070 # 45801 # 1 # ID=1_58;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.357 1_10 - 877 MobB PF03205.9 140 0.00089 12.0 0.1 1 1 5.4e-05 0.0029 10.3 0.0 4 37 484 516 482 524 0.79 # 6225 # 8855 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.545 1_99 - 745 MobB PF03205.9 140 0.0012 11.6 0.0 1 1 5.3e-05 0.0029 10.3 0.0 7 34 192 219 188 225 0.89 # 82828 # 85062 # -1 # ID=1_99;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.528 1_16 - 106 Zeta_toxin PF06414.7 201 0.00063 11.9 0.0 1 1 1.8e-05 0.00097 11.2 0.0 14 37 70 93 59 101 0.80 # 11398 # 11715 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.409 1_99 - 745 Zeta_toxin PF06414.7 201 0.00079 11.5 0.0 1 1 7.1e-05 0.0038 9.3 0.0 21 49 190 219 182 236 0.85 # 82828 # 85062 # -1 # ID=1_99;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.528 1_71 - 565 NAD_binding_8 PF13450.1 68 3.7e-05 16.7 1.2 1 2 3.5e-07 3.7e-05 16.7 1.2 1 35 102 135 102 155 0.90 # 53795 # 55489 # 1 # ID=1_71;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.652 1_71 - 565 NAD_binding_8 PF13450.1 68 3.7e-05 16.7 1.2 2 2 0.041 4.4 0.5 0.2 1 25 274 298 274 303 0.81 # 53795 # 55489 # 1 # ID=1_71;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.652 1_71 - 565 F420_oxidored PF03807.12 96 0.0076 9.7 4.1 1 2 0.0023 0.25 4.9 1.2 2 31 100 126 99 131 0.87 # 53795 # 55489 # 1 # ID=1_71;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.652 1_71 - 565 F420_oxidored PF03807.12 96 0.0076 9.7 4.1 2 2 0.0075 0.8 3.3 0.1 1 34 271 300 271 323 0.87 # 53795 # 55489 # 1 # ID=1_71;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.652 1_58 - 244 SMC_N PF02463.14 220 1.2e-05 17.6 0.3 1 3 0.00059 0.063 5.4 0.1 26 44 35 53 23 67 0.83 # 45070 # 45801 # 1 # ID=1_58;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.357 1_58 - 244 SMC_N PF02463.14 220 1.2e-05 17.6 0.3 2 3 7.5e-05 0.008 8.4 0.0 137 188 133 182 87 198 0.87 # 45070 # 45801 # 1 # ID=1_58;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.357 1_58 - 244 SMC_N PF02463.14 220 1.2e-05 17.6 0.3 3 3 0.031 3.3 -0.2 0.0 46 81 204 237 198 242 0.73 # 45070 # 45801 # 1 # ID=1_58;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.357 1_99 - 745 AAA_16 PF13191.1 185 4e-06 19.9 0.0 1 1 2e-07 2.2e-05 17.5 0.0 21 60 182 222 179 263 0.81 # 82828 # 85062 # -1 # ID=1_99;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.528 1_58 - 244 AAA_23 PF13476.1 202 1.2e-07 25.3 1.7 1 1 1.6e-09 1.7e-07 24.7 1.7 13 113 26 142 21 237 0.67 # 45070 # 45801 # 1 # ID=1_58;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.357 1_36 - 188 Methyltransf_25 PF13649.1 101 0.00012 15.4 0.0 1 1 1.7e-06 0.00018 14.9 0.0 1 101 54 142 54 142 0.81 # 25824 # 26387 # -1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.580 1_71 - 565 HI0933_like PF03486.9 409 2.4e-08 25.8 3.7 1 2 1.2e-06 0.00013 13.5 2.5 2 33 99 130 98 138 0.91 # 53795 # 55489 # 1 # ID=1_71;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.652 1_71 - 565 HI0933_like PF03486.9 409 2.4e-08 25.8 3.7 2 2 7.2e-06 0.00077 10.9 0.0 82 164 284 366 276 385 0.83 # 53795 # 55489 # 1 # ID=1_71;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.652 1_58 - 244 AAA_29 PF13555.1 62 0.00019 14.0 0.0 1 1 4e-06 0.00043 12.8 0.0 15 40 26 50 22 53 0.78 # 45070 # 45801 # 1 # ID=1_58;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.357 1_71 - 565 FAD_binding_2 PF00890.19 417 4.6e-06 18.6 4.7 1 3 4.3e-08 4.6e-06 18.6 4.7 2 32 100 130 99 137 0.90 # 53795 # 55489 # 1 # ID=1_71;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.652 1_71 - 565 FAD_binding_2 PF00890.19 417 4.6e-06 18.6 4.7 2 3 0.034 3.7 -0.8 0.1 143 204 311 369 297 388 0.72 # 53795 # 55489 # 1 # ID=1_71;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.652 1_71 - 565 FAD_binding_2 PF00890.19 417 4.6e-06 18.6 4.7 3 3 0.074 7.9 -1.9 0.0 376 402 388 408 377 424 0.82 # 53795 # 55489 # 1 # ID=1_71;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.652 1_71 - 565 Pyr_redox_3 PF13738.1 203 1.4e-17 57.4 0.1 1 2 4.4e-14 4.8e-12 39.3 0.1 1 201 101 303 101 305 0.75 # 53795 # 55489 # 1 # ID=1_71;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.652 1_71 - 565 Pyr_redox_3 PF13738.1 203 1.4e-17 57.4 0.1 2 2 9e-07 9.7e-05 15.5 0.0 93 147 320 375 309 430 0.76 # 53795 # 55489 # 1 # ID=1_71;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.652 1_58 - 244 MMR_HSR1 PF01926.18 116 0.00018 14.5 0.7 1 1 3e-06 0.00032 13.7 0.7 2 38 36 68 35 237 0.87 # 45070 # 45801 # 1 # ID=1_58;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.357 1_36 - 188 N6_Mtase PF02384.11 311 0.00016 13.8 0.0 1 2 1.6e-05 0.0017 10.4 0.0 28 64 32 68 21 83 0.87 # 25824 # 26387 # -1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.580 1_36 - 188 N6_Mtase PF02384.11 311 0.00016 13.8 0.0 2 2 0.018 1.9 0.4 0.0 127 137 114 124 103 134 0.82 # 25824 # 26387 # -1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.580 1_58 - 244 DUF258 PF03193.11 161 0.00013 14.2 0.1 1 1 2e-06 0.00022 13.5 0.1 23 67 20 65 4 84 0.78 # 45070 # 45801 # 1 # ID=1_58;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.357 1_99 - 745 TraG-D_C PF12696.2 128 8.2e-21 67.2 0.0 1 1 1.4e-22 1.5e-20 66.4 0.0 1 127 419 541 419 542 0.86 # 82828 # 85062 # -1 # ID=1_99;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.528 1_16 - 106 KTI12 PF08433.5 270 0.00061 12.0 0.0 1 1 8.4e-06 0.0009 11.5 0.0 5 30 76 101 75 104 0.90 # 11398 # 11715 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.409 1_36 - 188 Methyltransf_26 PF13659.1 117 2.7e-14 46.2 0.0 1 1 9e-16 4.8e-14 45.4 0.0 2 114 52 147 51 150 0.91 # 25824 # 26387 # -1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.580 1_45 - 228 Methyltransf_26 PF13659.1 117 1.5e-13 43.8 0.1 1 2 6.9e-09 3.7e-07 23.2 0.0 53 114 3 71 2 74 0.78 # 32103 # 32786 # -1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.573 1_45 - 228 Methyltransf_26 PF13659.1 117 1.5e-13 43.8 0.1 2 2 1.9e-07 1e-05 18.6 0.0 4 44 167 206 164 222 0.82 # 32103 # 32786 # -1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.573 1_98 - 1757 AAA_30 PF13604.1 196 1.7e-44 144.7 14.6 1 3 0.095 5.1 -0.4 0.0 41 86 223 269 219 280 0.82 # 77558 # 82828 # -1 # ID=1_98;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.599 1_98 - 1757 AAA_30 PF13604.1 196 1.7e-44 144.7 14.6 2 3 1.1e-05 0.00058 12.5 3.3 7 148 420 553 416 562 0.83 # 77558 # 82828 # -1 # ID=1_98;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.599 1_98 - 1757 AAA_30 PF13604.1 196 1.7e-44 144.7 14.6 3 3 9.9e-44 5.3e-42 136.6 1.9 1 186 968 1156 968 1162 0.94 # 77558 # 82828 # -1 # ID=1_98;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.599 1_99 - 745 AAA_30 PF13604.1 196 0.00064 12.3 0.0 1 1 2.6e-05 0.0014 11.2 0.0 21 57 188 224 180 230 0.85 # 82828 # 85062 # -1 # ID=1_99;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.528 1_10 - 877 FtsK_SpoIIIE PF01580.13 205 1.6e-05 17.5 0.1 1 2 2e-06 0.00022 13.7 0.0 39 63 477 505 464 508 0.84 # 6225 # 8855 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.545 1_10 - 877 FtsK_SpoIIIE PF01580.13 205 1.6e-05 17.5 0.1 2 2 0.015 1.6 1.1 0.0 75 166 531 626 530 669 0.82 # 6225 # 8855 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.545 1_36 - 188 MTS PF05175.9 170 9.3e-10 31.1 0.0 1 1 1.2e-11 1.3e-09 30.7 0.0 31 141 50 149 41 166 0.84 # 25824 # 26387 # -1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.580 1_36 - 188 Methyltrans_SAM PF10672.4 286 0.00098 11.0 0.0 1 1 1.3e-05 0.0014 10.5 0.0 196 261 113 173 100 180 0.78 # 25824 # 26387 # -1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.580 1_36 - 188 Met_10 PF02475.11 200 0.00055 12.5 0.0 1 1 7e-06 0.00075 12.1 0.0 99 189 48 132 38 145 0.78 # 25824 # 26387 # -1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.580 1_58 - 244 ABC_tran PF00005.22 137 5.7e-24 78.0 0.0 1 1 7.6e-26 8.1e-24 77.5 0.0 2 136 24 162 23 163 0.93 # 45070 # 45801 # 1 # ID=1_58;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.357 1_71 - 565 K_oxygenase PF13434.1 341 6.1e-06 18.3 0.0 1 3 0.0039 0.42 2.4 0.0 187 220 94 125 59 130 0.79 # 53795 # 55489 # 1 # ID=1_71;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.652 1_71 - 565 K_oxygenase PF13434.1 341 6.1e-06 18.3 0.0 2 3 3.3e-06 0.00036 12.5 0.0 132 231 218 308 202 332 0.82 # 53795 # 55489 # 1 # ID=1_71;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.652 1_71 - 565 K_oxygenase PF13434.1 341 6.1e-06 18.3 0.0 3 3 0.057 6.1 -1.4 0.0 132 160 346 369 314 377 0.67 # 53795 # 55489 # 1 # ID=1_71;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.652 1_45 - 228 Cons_hypoth95 PF03602.10 183 4.6e-06 19.1 0.0 1 2 0.00022 0.023 7.0 0.0 112 146 18 54 2 82 0.64 # 32103 # 32786 # -1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.573 1_45 - 228 Cons_hypoth95 PF03602.10 183 4.6e-06 19.1 0.0 2 2 2.4e-05 0.0025 10.2 0.0 41 76 162 199 145 220 0.73 # 32103 # 32786 # -1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.573 1_98 - 1757 AAA_19 PF13245.1 76 2.1e-07 23.7 2.2 1 1 1.1e-08 6e-07 22.2 0.5 7 76 981 1047 974 1047 0.74 # 77558 # 82828 # -1 # ID=1_98;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.599 1_16 - 106 AAA_19 PF13245.1 76 0.00023 13.9 0.0 1 1 7.1e-06 0.00038 13.2 0.0 13 38 75 100 66 105 0.79 # 11398 # 11715 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.409 1_10 - 877 AAA_10 PF12846.2 304 4.6e-49 160.4 0.0 1 1 1.5e-50 7.9e-49 159.6 0.0 1 294 480 769 480 775 0.89 # 6225 # 8855 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.545 1_99 - 745 AAA_10 PF12846.2 304 1.6e-10 33.9 0.0 1 1 5.1e-11 2.7e-09 29.8 0.0 3 296 187 494 186 500 0.68 # 82828 # 85062 # -1 # ID=1_99;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.528 1_71 - 565 FAD_oxidored PF12831.2 428 3.1e-06 19.4 3.6 1 1 2.9e-08 3.1e-06 19.4 3.6 2 41 100 138 99 167 0.83 # 53795 # 55489 # 1 # ID=1_71;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.652 1_71 - 565 DAO PF01266.19 358 4.5e-09 28.6 11.7 1 3 1.4e-08 1.5e-06 20.3 0.7 1 38 99 134 99 190 0.84 # 53795 # 55489 # 1 # ID=1_71;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.652 1_71 - 565 DAO PF01266.19 358 4.5e-09 28.6 11.7 2 3 0.032 3.4 -0.6 0.1 3 31 273 301 271 307 0.75 # 53795 # 55489 # 1 # ID=1_71;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.652 1_71 - 565 DAO PF01266.19 358 4.5e-09 28.6 11.7 3 3 9.4e-07 0.0001 14.3 0.5 152 208 314 372 307 433 0.74 # 53795 # 55489 # 1 # ID=1_71;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.652 1_36 - 188 Methyltransf_31 PF13847.1 152 6.6e-07 22.0 0.0 1 1 1.5e-08 8.2e-07 21.7 0.0 5 119 52 162 48 183 0.83 # 25824 # 26387 # -1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.580 1_59 - 188 Methyltransf_31 PF13847.1 152 0.0021 10.7 2.1 1 2 8.7e-05 0.0047 9.5 0.9 39 88 29 78 24 102 0.83 # 45805 # 46368 # 1 # ID=1_59;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.319 1_59 - 188 Methyltransf_31 PF13847.1 152 0.0021 10.7 2.1 2 2 0.08 4.3 -0.1 0.0 52 67 133 148 124 172 0.79 # 45805 # 46368 # 1 # ID=1_59;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.319 1_98 - 1757 Viral_helicase1 PF01443.13 234 0.00035 13.1 0.0 1 2 0.00014 0.015 7.8 0.0 1 118 988 1121 988 1212 0.52 # 77558 # 82828 # -1 # ID=1_98;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.599 1_98 - 1757 Viral_helicase1 PF01443.13 234 0.00035 13.1 0.0 2 2 0.0066 0.7 2.3 0.0 171 234 1387 1447 1342 1447 0.63 # 77558 # 82828 # -1 # ID=1_98;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.599 1_71 - 565 NAD_binding_9 PF13454.1 156 3.1e-05 16.8 2.8 1 3 0.0081 0.87 2.3 0.1 1 41 101 135 101 162 0.81 # 53795 # 55489 # 1 # ID=1_71;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.652 1_71 - 565 NAD_binding_9 PF13454.1 156 3.1e-05 16.8 2.8 2 3 0.034 3.6 0.3 0.0 134 155 218 241 202 242 0.72 # 53795 # 55489 # 1 # ID=1_71;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.652 1_71 - 565 NAD_binding_9 PF13454.1 156 3.1e-05 16.8 2.8 3 3 6.6e-06 0.00071 12.4 0.1 112 155 321 366 311 367 0.85 # 53795 # 55489 # 1 # ID=1_71;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.652 1_71 - 565 Pyr_redox PF00070.22 80 3.9e-20 65.1 6.0 1 2 1.4e-06 0.00015 15.2 1.5 1 31 99 129 99 131 0.96 # 53795 # 55489 # 1 # ID=1_71;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.652 1_71 - 565 Pyr_redox PF00070.22 80 3.9e-20 65.1 6.0 2 2 6.2e-18 6.7e-16 51.6 0.2 1 74 271 345 271 354 0.90 # 53795 # 55489 # 1 # ID=1_71;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.652 1_99 - 745 TrwB_AAD_bind PF10412.4 386 2.8e-150 493.1 0.0 1 1 6.6e-152 3.5e-150 492.8 0.0 2 386 172 561 171 561 0.99 # 82828 # 85062 # -1 # ID=1_99;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.528 1_10 - 877 TrwB_AAD_bind PF10412.4 386 5.8e-07 21.4 0.2 1 2 4.8e-08 2.6e-06 19.2 0.0 15 53 480 518 471 548 0.80 # 6225 # 8855 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.545 1_10 - 877 TrwB_AAD_bind PF10412.4 386 5.8e-07 21.4 0.2 2 2 0.054 2.9 -0.7 0.1 261 317 714 770 706 773 0.92 # 6225 # 8855 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.545 1_98 - 1757 AAA_11 PF13086.1 236 0.00019 14.0 3.2 1 1 2.1e-06 0.00022 13.8 0.0 2 75 969 1039 968 1059 0.81 # 77558 # 82828 # -1 # ID=1_98;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.599 1_99 - 745 T4SS-DNA_transf PF02534.9 469 4.8e-10 31.5 0.0 1 1 2.1e-11 1.1e-09 30.3 0.0 250 361 362 476 198 500 0.76 # 82828 # 85062 # -1 # ID=1_99;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.528 1_10 - 877 T4SS-DNA_transf PF02534.9 469 0.00035 12.2 0.0 1 2 0.0047 0.25 2.8 0.0 105 182 534 605 471 624 0.82 # 6225 # 8855 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.545 1_10 - 877 T4SS-DNA_transf PF02534.9 469 0.00035 12.2 0.0 2 2 0.00023 0.012 7.1 0.0 319 378 712 770 663 772 0.91 # 6225 # 8855 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.545 1_36 - 188 TIGR00755 TIGR00755 256 2.7e-09 29.3 0.0 1 1 3.4e-11 3.6e-09 28.9 0.0 8 105 29 123 25 134 0.90 # 25824 # 26387 # -1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.580 1_45 - 228 MethyltransfD12 PF02086.10 260 0.00058 12.3 0.0 1 2 0.023 2.5 0.4 0.0 178 188 21 31 13 86 0.85 # 32103 # 32786 # -1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.573 1_45 - 228 MethyltransfD12 PF02086.10 260 0.00058 12.3 0.0 2 2 3.7e-05 0.004 9.6 0.0 20 46 163 189 148 198 0.78 # 32103 # 32786 # -1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.573 1_10 - 877 Pox_A32 PF04665.7 241 0.0009 11.5 0.0 1 1 2.3e-05 0.0025 10.1 0.0 7 38 474 505 470 520 0.85 # 6225 # 8855 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.545 1_58 - 244 UPF0079 PF02367.12 123 0.00021 13.9 0.2 1 1 4.5e-06 0.00049 12.8 0.2 9 37 27 55 22 65 0.81 # 45070 # 45801 # 1 # ID=1_58;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.357 1_71 - 565 AlaDh_PNT_C PF01262.16 168 2.5e-05 16.9 3.1 1 2 0.00051 0.055 6.0 0.8 15 50 92 127 89 130 0.90 # 53795 # 55489 # 1 # ID=1_71;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.652 1_71 - 565 AlaDh_PNT_C PF01262.16 168 2.5e-05 16.9 3.1 2 2 2.1e-05 0.0023 10.5 0.1 16 58 265 307 257 339 0.84 # 53795 # 55489 # 1 # ID=1_71;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.652 1_45 - 228 Methyltransf_15 PF09445.5 164 0.00048 12.7 0.0 1 2 0.012 1.3 1.5 0.0 53 80 4 30 2 34 0.91 # 32103 # 32786 # -1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.573 1_45 - 228 Methyltransf_15 PF09445.5 164 0.00048 12.7 0.0 2 2 7e-05 0.0075 8.8 0.0 3 31 166 194 164 208 0.86 # 32103 # 32786 # -1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.573 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/5c2a1773-567a-41b9-85fd-ba0d47b39e88 # Target file: checkm_output/bins/pm583/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm583/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/5c2a1773-567a-41b9-85fd-ba0d47b39e88 checkm_output/bins/pm583/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 17:07:36 2020 # [ok]