# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_4 - 234 UPF0020 PF01170.13 180 6e-05 15.5 0.0 1 2 3.5e-05 0.0033 9.8 0.0 103 123 17 37 5 85 0.75 # 2234 # 2935 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.617 1_4 - 234 UPF0020 PF01170.13 180 6e-05 15.5 0.0 2 2 0.0026 0.24 3.7 0.0 28 44 170 186 165 227 0.77 # 2234 # 2935 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.617 2_14 - 214 MipZ PF09140.6 261 1.3e-07 23.7 3.9 1 2 0.00026 0.024 6.4 0.4 5 23 6 24 2 37 0.75 # 15035 # 15676 # 1 # ID=2_14;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.450 2_14 - 214 MipZ PF09140.6 261 1.3e-07 23.7 3.9 2 2 4.9e-08 4.6e-06 18.6 0.1 82 133 57 108 26 125 0.83 # 15035 # 15676 # 1 # ID=2_14;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.450 1_13 - 186 SSB PF00436.20 104 3.4e-41 132.2 0.2 1 1 4.5e-43 4.2e-41 131.9 0.2 1 99 6 105 6 113 0.95 # 7724 # 8281 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.625 1_65 - 1753 UvrD_C_2 PF13538.1 104 7.2e-08 25.4 0.2 1 1 5.1e-09 4.7e-07 22.8 0.1 3 102 1339 1442 1335 1444 0.76 # 47219 # 52477 # 1 # ID=1_65;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.620 1_45 - 880 DUF87 PF01935.12 229 4.2e-06 19.5 0.0 1 2 0.091 8.5 -1.1 0.2 114 170 313 364 304 395 0.60 # 28286 # 30925 # 1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.546 1_45 - 880 DUF87 PF01935.12 229 4.2e-06 19.5 0.0 2 2 2.2e-07 2e-05 17.3 0.0 26 222 484 674 479 681 0.82 # 28286 # 30925 # 1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.546 1_65 - 1753 AAA_22 PF13401.1 131 0.00034 13.6 0.1 1 2 0.0053 0.49 3.4 0.0 88 121 499 535 463 537 0.71 # 47219 # 52477 # 1 # ID=1_65;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.620 1_65 - 1753 AAA_22 PF13401.1 131 0.00034 13.6 0.1 2 2 0.0009 0.084 5.8 0.0 5 28 987 1010 983 1062 0.79 # 47219 # 52477 # 1 # ID=1_65;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.620 1_4 - 234 N6_N4_Mtase PF01555.13 231 1.2e-31 102.7 0.0 1 2 1.3e-14 1.2e-12 40.6 0.0 1 113 21 130 21 140 0.87 # 2234 # 2935 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.617 1_4 - 234 N6_N4_Mtase PF01555.13 231 1.2e-31 102.7 0.0 2 2 1.2e-20 1.1e-18 60.3 0.0 171 227 150 206 138 210 0.93 # 2234 # 2935 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.617 2_14 - 214 VirC1 PF07015.6 231 0.00068 11.5 0.0 1 2 0.00069 0.065 5.1 0.0 1 29 1 29 1 36 0.83 # 15035 # 15676 # 1 # ID=2_14;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.450 2_14 - 214 VirC1 PF07015.6 231 0.00068 11.5 0.0 2 2 0.00092 0.086 4.6 0.0 89 190 79 181 59 208 0.72 # 15035 # 15676 # 1 # ID=2_14;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.450 1_64 - 771 AAA_16 PF13191.1 185 5.1e-06 19.4 0.0 1 1 2.6e-07 2.4e-05 17.2 0.0 21 56 182 218 179 253 0.78 # 44907 # 47219 # 1 # ID=1_64;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.571 2_14 - 214 CbiA PF01656.18 195 5.9e-11 34.9 0.2 1 1 1.1e-12 1e-10 34.1 0.2 1 161 4 143 4 175 0.74 # 15035 # 15676 # 1 # ID=2_14;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.450 1_26 - 278 N6_Mtase PF02384.11 311 1.7e-12 39.7 0.0 1 1 3.5e-14 3.2e-12 38.9 0.0 25 117 139 237 132 265 0.85 # 16390 # 17223 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.566 1_64 - 771 TraG-D_C PF12696.2 128 6.5e-20 64.1 0.0 1 1 1.6e-21 1.4e-19 63.0 0.0 1 127 419 541 419 542 0.88 # 44907 # 47219 # 1 # ID=1_64;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.571 1_4 - 234 Methyltransf_26 PF13659.1 117 2.6e-10 33.2 0.2 1 2 2.1e-07 9.9e-06 18.4 0.0 63 114 13 71 3 74 0.73 # 2234 # 2935 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.617 1_4 - 234 Methyltransf_26 PF13659.1 117 2.6e-10 33.2 0.2 2 2 1.3e-05 0.00058 12.7 0.1 4 46 174 215 171 228 0.83 # 2234 # 2935 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.617 1_26 - 278 Methyltransf_26 PF13659.1 117 4.2e-05 16.4 0.2 1 1 2.8e-06 0.00013 14.8 0.1 3 68 171 241 170 271 0.83 # 16390 # 17223 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.566 1_65 - 1753 AAA_30 PF13604.1 196 8e-46 148.9 8.7 1 2 1.5e-06 0.00014 14.3 1.7 9 126 423 535 421 559 0.86 # 47219 # 52477 # 1 # ID=1_65;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.620 1_65 - 1753 AAA_30 PF13604.1 196 8e-46 148.9 8.7 2 2 3.8e-44 3.6e-42 136.9 0.8 2 186 970 1157 969 1161 0.94 # 47219 # 52477 # 1 # ID=1_65;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.620 1_45 - 880 FtsK_SpoIIIE PF01580.13 205 0.0001 14.6 0.0 1 1 2.7e-06 0.00025 13.3 0.0 39 63 480 506 466 508 0.85 # 28286 # 30925 # 1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.546 1_4 - 234 Cons_hypoth95 PF03602.10 183 0.00025 13.2 0.0 1 2 0.00032 0.03 6.5 0.0 113 166 19 74 12 84 0.63 # 2234 # 2935 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.617 1_4 - 234 Cons_hypoth95 PF03602.10 183 0.00025 13.2 0.0 2 2 0.0011 0.1 4.7 0.0 41 60 169 188 157 225 0.73 # 2234 # 2935 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.617 1_65 - 1753 AAA_19 PF13245.1 76 1.5e-06 20.7 2.9 1 1 2e-08 1.8e-06 20.5 0.3 5 75 980 1047 975 1048 0.72 # 47219 # 52477 # 1 # ID=1_65;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.620 1_45 - 880 AAA_10 PF12846.2 304 9.1e-46 149.4 0.0 1 1 3.1e-47 1.4e-45 148.7 0.0 1 294 481 773 481 779 0.85 # 28286 # 30925 # 1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.546 1_64 - 771 AAA_10 PF12846.2 304 2e-09 30.1 0.0 1 2 1e-05 0.00048 12.4 0.0 3 43 187 227 186 256 0.92 # 44907 # 47219 # 1 # ID=1_64;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.571 1_64 - 771 AAA_10 PF12846.2 304 2e-09 30.1 0.0 2 2 1.1e-06 5.3e-05 15.5 0.0 201 296 398 494 284 499 0.85 # 44907 # 47219 # 1 # ID=1_64;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.571 1_21 - 292 Methyltransf_27 PF13708.1 194 5.3e-63 204.8 0.0 1 1 7e-65 6.5e-63 204.5 0.0 6 194 96 287 91 287 0.94 # 13584 # 14459 # 1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.578 1_64 - 771 TrwB_AAD_bind PF10412.4 386 3.6e-148 486.0 0.0 1 1 9.5e-150 4.4e-148 485.7 0.0 2 385 172 560 171 561 0.99 # 44907 # 47219 # 1 # ID=1_64;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.571 1_45 - 880 TrwB_AAD_bind PF10412.4 386 1.4e-05 16.6 0.2 1 1 8e-07 3.7e-05 15.2 0.0 16 91 482 553 474 569 0.71 # 28286 # 30925 # 1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.546 1_65 - 1753 AAA_11 PF13086.1 236 6.5e-07 21.9 0.2 1 3 6.8e-06 0.00064 12.1 0.0 2 75 970 1040 969 1060 0.76 # 47219 # 52477 # 1 # ID=1_65;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.620 1_65 - 1753 AAA_11 PF13086.1 236 6.5e-07 21.9 0.2 2 3 0.0013 0.12 4.7 0.0 194 231 1066 1106 1042 1108 0.73 # 47219 # 52477 # 1 # ID=1_65;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.620 1_65 - 1753 AAA_11 PF13086.1 236 6.5e-07 21.9 0.2 3 3 0.021 2 0.7 0.0 2 35 1180 1212 1179 1336 0.70 # 47219 # 52477 # 1 # ID=1_65;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.620 1_64 - 771 T4SS-DNA_transf PF02534.9 469 9.1e-09 27.1 0.0 1 2 0.035 3.3 -1.1 0.0 128 199 260 330 249 356 0.72 # 44907 # 47219 # 1 # ID=1_64;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.571 1_64 - 771 T4SS-DNA_transf PF02534.9 469 9.1e-09 27.1 0.0 2 2 3.5e-10 3.2e-08 25.3 0.0 278 393 396 507 364 559 0.74 # 44907 # 47219 # 1 # ID=1_64;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.571 1_45 - 880 Pox_A32 PF04665.7 241 7e-05 15.0 0.0 1 1 1.5e-06 0.00014 14.0 0.0 6 40 474 508 470 523 0.82 # 28286 # 30925 # 1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.546 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/596a07e2-0a07-4c14-b9eb-66d574632814 # Target file: checkm_output/bins/pm574/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm574/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/596a07e2-0a07-4c14-b9eb-66d574632814 checkm_output/bins/pm574/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 17:07:30 2020 # [ok]