# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_45 - 471 Methyltransf_12 PF08242.7 99 0.0002 15.0 0.0 1 1 4.2e-06 0.0005 13.7 0.0 1 99 55 144 55 144 0.84 # 46189 # 47601 # -1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.590 1_45 - 471 RrnaAD PF00398.15 262 1.2e-07 24.1 0.0 1 1 1.4e-09 1.7e-07 23.7 0.0 9 113 29 128 24 147 0.89 # 46189 # 47601 # -1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.590 1_57 - 389 MipZ PF09140.6 261 5.1e-06 18.8 0.4 1 2 3.5e-06 0.00042 12.6 0.0 2 47 108 153 107 157 0.87 # 55935 # 57101 # -1 # ID=1_57;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.470 1_57 - 389 MipZ PF09140.6 261 5.1e-06 18.8 0.4 2 2 0.0011 0.13 4.4 0.0 88 134 224 270 197 292 0.84 # 55935 # 57101 # -1 # ID=1_57;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.470 1_44 - 186 SSB PF00436.20 104 4.6e-41 132.1 0.3 1 1 4.9e-43 5.8e-41 131.8 0.3 1 101 6 109 6 112 0.96 # 45668 # 46225 # -1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.593 1_45 - 471 Methyltransf_18 PF12847.2 112 5.2e-09 29.9 0.0 1 1 9e-11 1.1e-08 28.9 0.0 4 109 53 146 50 148 0.88 # 46189 # 47601 # -1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.590 1_14 - 1700 UvrD_C_2 PF13538.1 104 3.3e-07 23.6 0.7 1 2 0.013 1.5 2.2 0.0 6 44 1159 1197 1155 1226 0.75 # 8360 # 13459 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.596 1_14 - 1700 UvrD_C_2 PF13538.1 104 3.3e-07 23.6 0.7 2 2 1e-07 1.2e-05 18.5 0.1 3 102 1273 1376 1271 1378 0.77 # 8360 # 13459 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.596 1_28 - 1062 DUF87 PF01935.12 229 2.1e-07 24.1 0.0 1 1 4.5e-09 5.3e-07 22.8 0.0 26 222 482 669 468 676 0.77 # 28110 # 31295 # -1 # ID=1_28;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.551 4_4 - 318 AAA_22 PF13401.1 131 7.7e-05 16.0 0.0 1 1 1.1e-06 0.00013 15.2 0.0 6 34 2 30 1 177 0.85 # 1994 # 2947 # 1 # ID=4_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.583 2_13 - 311 AAA_15 PF13175.1 415 3.3e-07 22.7 0.0 1 2 1.8e-05 0.0021 10.2 0.0 23 42 34 53 19 85 0.82 # 13615 # 14547 # -1 # ID=2_13;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.517 2_13 - 311 AAA_15 PF13175.1 415 3.3e-07 22.7 0.0 2 2 1.5e-05 0.0017 10.5 0.0 370 410 160 200 151 202 0.91 # 13615 # 14547 # -1 # ID=2_13;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.517 4_4 - 318 AAA_17 PF13207.1 121 2.9e-06 21.2 0.0 1 1 1e-07 5.9e-06 20.3 0.0 1 32 2 34 2 172 0.58 # 1994 # 2947 # 1 # ID=4_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.583 1_15 - 814 AAA_17 PF13207.1 121 0.00044 14.2 0.0 1 1 1.6e-05 0.00097 13.1 0.0 3 28 189 218 187 353 0.74 # 13465 # 15906 # -1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.532 2_13 - 311 AAA_21 PF13304.1 303 1.3e-17 57.8 0.0 1 2 1.5e-09 1.8e-07 24.5 0.0 1 25 35 63 35 100 0.78 # 13615 # 14547 # -1 # ID=2_13;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.517 2_13 - 311 AAA_21 PF13304.1 303 1.3e-17 57.8 0.0 2 2 1.1e-11 1.3e-09 31.6 0.0 232 298 138 201 108 203 0.84 # 13615 # 14547 # -1 # ID=2_13;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.517 1_28 - 1062 MobB PF03205.9 140 0.00047 13.0 0.2 1 2 3.4e-05 0.004 10.0 0.0 4 37 483 515 481 523 0.79 # 28110 # 31295 # -1 # ID=1_28;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.551 1_28 - 1062 MobB PF03205.9 140 0.00047 13.0 0.2 2 2 0.043 5.1 -0.0 0.0 25 64 695 732 690 744 0.86 # 28110 # 31295 # -1 # ID=1_28;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.551 1_57 - 389 ArsA_ATPase PF02374.10 305 2.1e-06 20.1 0.4 1 2 1.7e-06 0.00019 13.6 0.1 9 36 115 142 109 151 0.89 # 55935 # 57101 # -1 # ID=1_57;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.470 1_57 - 389 ArsA_ATPase PF02374.10 305 2.1e-06 20.1 0.4 2 2 0.0011 0.13 4.3 0.0 123 136 231 244 221 251 0.84 # 55935 # 57101 # -1 # ID=1_57;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.470 4_4 - 318 Zeta_toxin PF06414.7 201 0.00029 13.1 0.0 1 2 1.3e-05 0.0016 10.7 0.0 19 53 3 35 1 120 0.85 # 1994 # 2947 # 1 # ID=4_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.583 4_4 - 318 Zeta_toxin PF06414.7 201 0.00029 13.1 0.0 2 2 0.059 6.9 -1.2 0.0 45 74 106 133 95 148 0.73 # 1994 # 2947 # 1 # ID=4_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.583 2_13 - 311 SMC_N PF02463.14 220 3.6e-08 26.0 0.2 1 1 8.8e-10 1e-07 24.5 0.2 25 198 34 201 25 217 0.75 # 13615 # 14547 # -1 # ID=2_13;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.517 1_57 - 389 VirC1 PF07015.6 231 7.8e-05 14.9 0.1 1 2 0.00028 0.033 6.3 0.0 4 42 109 147 107 154 0.91 # 55935 # 57101 # -1 # ID=1_57;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.470 1_57 - 389 VirC1 PF07015.6 231 7.8e-05 14.9 0.1 2 2 0.0003 0.035 6.2 0.1 84 139 235 290 222 312 0.77 # 55935 # 57101 # -1 # ID=1_57;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.470 1_15 - 814 AAA_16 PF13191.1 185 6.3e-06 19.4 0.0 1 1 4.6e-07 2.7e-05 17.3 0.0 21 60 182 222 179 263 0.81 # 13465 # 15906 # -1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.532 2_13 - 311 AAA_16 PF13191.1 185 0.00033 13.8 0.2 1 1 1.3e-05 0.00076 12.6 0.0 12 63 23 74 16 91 0.71 # 13615 # 14547 # -1 # ID=2_13;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.517 2_13 - 311 AAA_23 PF13476.1 202 1.5e-05 18.5 0.2 1 1 2.2e-07 2.6e-05 17.7 0.2 21 40 35 54 22 64 0.86 # 13615 # 14547 # -1 # ID=2_13;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.517 4_4 - 318 AAA_18 PF13238.1 129 3.8e-10 33.3 0.0 1 1 5.5e-12 6.5e-10 32.6 0.0 1 126 3 134 3 137 0.71 # 1994 # 2947 # 1 # ID=4_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.583 3_8 - 370 adh_short PF00106.20 167 0.0008 12.5 0.1 1 1 2.4e-05 0.0029 10.7 0.1 3 49 4 48 2 175 0.83 # 5821 # 6930 # -1 # ID=3_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.384 2_13 - 311 AAA_13 PF13166.1 712 0.0019 9.8 0.0 1 2 0.00088 0.1 4.0 0.2 23 36 40 53 29 66 0.83 # 13615 # 14547 # -1 # ID=2_13;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.517 2_13 - 311 AAA_13 PF13166.1 712 0.0019 9.8 0.0 2 2 0.0013 0.15 3.5 0.0 529 572 162 203 152 209 0.90 # 13615 # 14547 # -1 # ID=2_13;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.517 1_57 - 389 CbiA PF01656.18 195 1.2e-36 119.1 0.0 1 1 1.3e-38 1.6e-36 118.7 0.0 2 194 110 339 109 340 0.80 # 55935 # 57101 # -1 # ID=1_57;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.470 2_13 - 311 AAA_29 PF13555.1 62 1e-06 21.4 0.2 1 1 2e-08 2.4e-06 20.2 0.2 18 44 29 54 14 63 0.83 # 13615 # 14547 # -1 # ID=2_13;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.517 3_8 - 370 KR PF08659.5 181 0.00082 12.2 0.0 1 1 1.3e-05 0.0015 11.3 0.0 4 49 5 51 3 101 0.75 # 5821 # 6930 # -1 # ID=3_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.384 2_4 - 426 Pyr_redox_3 PF13738.1 203 2.6e-18 59.9 0.0 1 2 2e-16 2.3e-14 47.0 0.0 78 200 93 218 64 221 0.87 # 2992 # 4269 # -1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.471 2_4 - 426 Pyr_redox_3 PF13738.1 203 2.6e-18 59.9 0.0 2 2 2.2e-05 0.0026 10.9 0.0 48 172 234 375 225 381 0.65 # 2992 # 4269 # -1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.471 2_13 - 311 MMR_HSR1 PF01926.18 116 0.00052 13.1 0.4 1 1 7.5e-06 0.00089 12.4 0.4 2 21 36 55 35 200 0.76 # 13615 # 14547 # -1 # ID=2_13;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.517 2_13 - 311 DUF258 PF03193.11 161 0.00035 12.9 0.1 1 1 5.3e-06 0.00062 12.1 0.1 25 67 22 65 2 70 0.78 # 13615 # 14547 # -1 # ID=2_13;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.517 1_15 - 814 TraG-D_C PF12696.2 128 1.1e-20 67.0 0.0 1 1 1.6e-22 1.9e-20 66.2 0.0 1 127 419 541 419 542 0.86 # 13465 # 15906 # -1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.532 1_57 - 389 AAA_31 PF13614.1 157 1.2e-09 31.5 0.0 1 2 1.4e-08 1.6e-06 21.3 0.0 2 49 108 155 107 195 0.91 # 55935 # 57101 # -1 # ID=1_57;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.470 1_57 - 389 AAA_31 PF13614.1 157 1.2e-09 31.5 0.0 2 2 0.00018 0.021 7.9 0.1 110 152 227 268 223 272 0.84 # 55935 # 57101 # -1 # ID=1_57;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.470 4_4 - 318 AAA_33 PF13671.1 143 2.9e-10 33.3 0.0 1 1 7.1e-12 4.2e-10 32.8 0.0 2 127 3 130 2 151 0.75 # 1994 # 2947 # 1 # ID=4_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.583 2_13 - 311 AAA_33 PF13671.1 143 1.3e-05 18.3 0.1 1 1 9.2e-07 5.4e-05 16.2 0.1 3 33 37 75 35 201 0.63 # 13615 # 14547 # -1 # ID=2_13;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.517 1_45 - 471 Methyltransf_26 PF13659.1 117 5.8e-13 42.1 0.1 1 1 9.8e-15 1.2e-12 41.1 0.1 2 114 52 147 51 150 0.90 # 46189 # 47601 # -1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.590 1_14 - 1700 AAA_30 PF13604.1 196 1.1e-43 142.2 15.5 1 2 0.00015 0.0058 9.3 4.5 7 147 352 484 348 494 0.84 # 8360 # 13459 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.596 1_14 - 1700 AAA_30 PF13604.1 196 1.1e-43 142.2 15.5 2 2 1.1e-43 4.2e-42 137.0 1.5 1 186 900 1088 900 1092 0.93 # 8360 # 13459 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.596 1_15 - 814 AAA_30 PF13604.1 196 0.00081 12.1 0.0 1 1 4.4e-05 0.0017 11.0 0.0 21 57 188 224 180 230 0.85 # 13465 # 15906 # -1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.532 2_13 - 311 AAA_30 PF13604.1 196 0.00085 12.1 0.1 1 1 5.3e-05 0.0021 10.8 0.1 15 53 30 68 21 83 0.74 # 13615 # 14547 # -1 # ID=2_13;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.517 1_28 - 1062 FtsK_SpoIIIE PF01580.13 205 7.9e-06 18.6 0.2 1 2 2.6e-06 0.0003 13.4 0.0 39 63 476 504 464 507 0.84 # 28110 # 31295 # -1 # ID=1_28;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.551 1_28 - 1062 FtsK_SpoIIIE PF01580.13 205 7.9e-06 18.6 0.2 2 2 0.005 0.58 2.7 0.1 75 167 530 626 529 632 0.85 # 28110 # 31295 # -1 # ID=1_28;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.551 1_45 - 471 MTS PF05175.9 170 9e-08 24.8 0.0 1 1 1.2e-09 1.4e-07 24.1 0.0 32 141 51 149 42 165 0.85 # 46189 # 47601 # -1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.590 2_4 - 426 Lycopene_cycl PF05834.7 374 3.3e-05 16.0 0.0 1 1 4.5e-07 5.3e-05 15.3 0.0 1 144 6 157 6 182 0.73 # 2992 # 4269 # -1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.471 2_13 - 311 ABC_tran PF00005.22 137 6e-30 97.5 0.0 1 1 7.5e-32 8.9e-30 96.9 0.0 1 136 23 170 23 171 0.89 # 13615 # 14547 # -1 # ID=2_13;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.517 2_4 - 426 K_oxygenase PF13434.1 341 3.6e-118 387.5 0.0 1 1 3.6e-120 4.3e-118 387.2 0.0 2 340 4 333 3 334 0.96 # 2992 # 4269 # -1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.471 3_8 - 370 NAD_binding_4 PF07993.7 249 1.1e-53 174.8 0.0 1 1 1.1e-55 1.4e-53 174.5 0.0 1 248 6 237 6 238 0.94 # 5821 # 6930 # -1 # ID=3_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.384 1_14 - 1700 AAA_19 PF13245.1 76 1.2e-07 24.6 1.4 1 1 8.6e-09 5.1e-07 22.6 0.3 7 76 913 979 906 979 0.74 # 8360 # 13459 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.596 4_4 - 318 AAA_19 PF13245.1 76 0.00073 12.5 0.0 1 1 3.6e-05 0.0021 11.0 0.0 15 33 5 22 2 38 0.84 # 1994 # 2947 # 1 # ID=4_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.583 3_8 - 370 NAD_binding_10 PF13460.1 183 1.6e-06 21.3 0.0 1 1 1.6e-06 0.00019 14.6 0.0 2 148 5 193 4 204 0.70 # 5821 # 6930 # -1 # ID=3_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.384 1_28 - 1062 AAA_10 PF12846.2 304 6.9e-49 160.0 0.0 1 1 2.9e-50 1.1e-48 159.3 0.0 1 294 479 768 479 774 0.88 # 28110 # 31295 # -1 # ID=1_28;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.551 1_15 - 814 AAA_10 PF12846.2 304 2.2e-10 33.6 0.0 1 1 9.3e-11 3.7e-09 29.5 0.0 3 296 187 494 186 500 0.68 # 13465 # 15906 # -1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.532 2_13 - 311 AAA_10 PF12846.2 304 0.00024 13.7 1.1 1 2 4.4e-05 0.0017 10.9 0.7 4 34 36 66 33 83 0.84 # 13615 # 14547 # -1 # ID=2_13;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.517 2_13 - 311 AAA_10 PF12846.2 304 0.00024 13.7 1.1 2 2 0.062 2.4 0.6 0.0 242 266 181 205 156 210 0.87 # 13615 # 14547 # -1 # ID=2_13;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.517 2_13 - 311 SbcCD_C PF13558.1 90 1e-06 21.7 0.0 1 1 5.8e-08 6.9e-06 19.1 0.0 26 89 136 186 119 187 0.80 # 13615 # 14547 # -1 # ID=2_13;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.517 3_8 - 370 3Beta_HSD PF01073.14 280 6.5e-09 28.0 0.0 1 1 8.7e-11 1e-08 27.3 0.0 1 158 5 175 5 196 0.75 # 5821 # 6930 # -1 # ID=3_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.384 1_14 - 1700 Viral_helicase1 PF01443.13 234 0.00081 12.0 0.1 1 2 0.00031 0.037 6.6 0.0 1 23 920 943 920 1091 0.77 # 8360 # 13459 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.596 1_14 - 1700 Viral_helicase1 PF01443.13 234 0.00081 12.0 0.1 2 2 0.0067 0.79 2.3 0.0 171 234 1319 1379 1274 1379 0.63 # 8360 # 13459 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.596 2_4 - 426 FMO-like PF00743.14 532 3.3e-06 18.6 0.0 1 2 3.9e-06 0.00046 11.5 0.0 142 200 143 198 95 219 0.87 # 2992 # 4269 # -1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.471 2_4 - 426 FMO-like PF00743.14 532 3.3e-06 18.6 0.0 2 2 0.00035 0.041 5.1 0.0 317 342 319 344 311 377 0.81 # 2992 # 4269 # -1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.471 2_4 - 426 NAD_binding_9 PF13454.1 156 4.1e-09 29.5 0.0 1 3 5.8e-08 6.8e-06 19.1 0.0 3 155 10 151 7 152 0.68 # 2992 # 4269 # -1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.471 2_4 - 426 NAD_binding_9 PF13454.1 156 4.1e-09 29.5 0.0 2 3 0.02 2.4 1.1 0.0 2 31 186 214 185 229 0.79 # 2992 # 4269 # -1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.471 2_4 - 426 NAD_binding_9 PF13454.1 156 4.1e-09 29.5 0.0 3 3 0.00086 0.1 5.5 0.0 116 155 287 332 254 333 0.73 # 2992 # 4269 # -1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.471 3_8 - 370 Epimerase PF01370.16 236 2.1e-12 40.1 0.0 1 1 2.7e-14 3.2e-12 39.5 0.0 2 174 5 195 4 255 0.70 # 5821 # 6930 # -1 # ID=3_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.384 1_15 - 814 TrwB_AAD_bind PF10412.4 386 3.9e-150 492.8 0.0 1 1 8.2e-152 4.9e-150 492.5 0.0 2 386 172 561 171 561 0.99 # 13465 # 15906 # -1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.532 1_28 - 1062 TrwB_AAD_bind PF10412.4 386 7.2e-07 21.2 0.1 1 2 6e-08 3.6e-06 18.9 0.0 15 53 479 517 470 547 0.80 # 28110 # 31295 # -1 # ID=1_28;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.551 1_28 - 1062 TrwB_AAD_bind PF10412.4 386 7.2e-07 21.2 0.1 2 2 0.057 3.3 -0.7 0.0 261 317 713 769 689 771 0.92 # 28110 # 31295 # -1 # ID=1_28;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.551 1_14 - 1700 AAA_11 PF13086.1 236 0.00015 14.5 2.0 1 1 2.6e-06 0.00031 13.5 0.0 2 75 901 971 900 992 0.80 # 8360 # 13459 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.596 1_15 - 814 T4SS-DNA_transf PF02534.9 469 6.7e-10 31.2 0.0 1 1 2.5e-11 1.5e-09 30.1 0.0 250 361 362 476 198 500 0.77 # 13465 # 15906 # -1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.532 1_28 - 1062 T4SS-DNA_transf PF02534.9 469 0.0004 12.1 0.0 1 2 0.0041 0.24 3.0 0.0 105 184 533 606 471 625 0.83 # 28110 # 31295 # -1 # ID=1_28;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.551 1_28 - 1062 T4SS-DNA_transf PF02534.9 469 0.0004 12.1 0.0 2 2 0.00027 0.016 6.8 0.0 319 378 711 769 662 771 0.90 # 28110 # 31295 # -1 # ID=1_28;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.551 1_45 - 471 TIGR00755 TIGR00755 256 6.6e-08 24.9 0.0 1 1 8.1e-10 9.6e-08 24.4 0.0 8 105 29 123 25 133 0.90 # 46189 # 47601 # -1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.590 2_3 - 757 Plug PF07715.10 108 4.4e-20 65.2 1.9 1 1 5e-22 5.9e-20 64.8 0.6 3 107 44 145 42 146 0.94 # 637 # 2907 # -1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.543 4_4 - 318 RNA_helicase PF00910.17 107 0.0014 12.0 0.0 1 1 2.1e-05 0.0025 11.2 0.0 1 26 3 28 3 45 0.83 # 1994 # 2947 # 1 # ID=4_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.583 4_4 - 318 UPF0079 PF02367.12 123 0.00052 12.8 0.0 1 1 7.2e-06 0.00085 12.1 0.0 17 36 2 21 1 29 0.88 # 1994 # 2947 # 1 # ID=4_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.583 4_4 - 318 AAA_24 PF13479.1 213 0.00024 13.8 0.0 1 1 3.8e-06 0.00045 13.0 0.0 6 33 3 34 1 56 0.90 # 1994 # 2947 # 1 # ID=4_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.583 4_4 - 318 NACHT PF05729.7 166 3e-05 16.8 0.0 1 2 1.7e-06 0.0002 14.2 0.0 2 22 2 22 1 34 0.89 # 1994 # 2947 # 1 # ID=4_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.583 4_4 - 318 NACHT PF05729.7 166 3e-05 16.8 0.0 2 2 0.034 4.1 0.2 0.0 80 98 154 184 94 202 0.67 # 1994 # 2947 # 1 # ID=4_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.583 4_4 - 318 AAA_28 PF13521.1 163 0.00058 13.0 0.0 1 1 1.3e-05 0.0015 11.7 0.0 2 29 3 33 2 75 0.79 # 1994 # 2947 # 1 # ID=4_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.583 4_4 - 318 APS_kinase PF01583.15 157 8.3e-05 15.4 0.0 1 2 1.6e-05 0.0019 11.0 0.0 4 24 2 22 1 34 0.88 # 1994 # 2947 # 1 # ID=4_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.583 4_4 - 318 APS_kinase PF01583.15 157 8.3e-05 15.4 0.0 2 2 0.0088 1 2.1 0.1 34 73 107 148 96 159 0.86 # 1994 # 2947 # 1 # ID=4_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.583 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/bfcb901e-6761-4035-833e-eda850e91961 # Target file: checkm_output/bins/pm562/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm562/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/bfcb901e-6761-4035-833e-eda850e91961 checkm_output/bins/pm562/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 17:07:21 2020 # [ok]