# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_87 - 234 UPF0020 PF01170.13 180 4.2e-06 19.6 0.0 1 2 0.00015 0.0061 9.3 0.0 103 120 17 34 5 80 0.83 # 79004 # 79705 # 1 # ID=1_87;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.604 1_87 - 234 UPF0020 PF01170.13 180 4.2e-06 19.6 0.0 2 2 0.00028 0.011 8.4 0.0 28 51 170 193 165 227 0.75 # 79004 # 79705 # 1 # ID=1_87;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.604 1_99 - 188 UPF0020 PF01170.13 180 1.6e-05 17.7 0.0 1 2 2.8e-06 0.00011 14.9 0.0 19 54 41 78 39 110 0.68 # 86649 # 87212 # 1 # ID=1_99;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.594 1_99 - 188 UPF0020 PF01170.13 180 1.6e-05 17.7 0.0 2 2 0.035 1.4 1.6 0.0 91 116 98 122 87 138 0.82 # 86649 # 87212 # 1 # ID=1_99;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.594 1_76 - 676 UPF0020 PF01170.13 180 0.00028 13.6 0.1 1 2 0.00032 0.013 8.2 0.1 31 45 209 223 201 230 0.88 # 67614 # 69641 # -1 # ID=1_76;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.569 1_76 - 676 UPF0020 PF01170.13 180 0.00028 13.6 0.1 2 2 0.015 0.62 2.7 0.0 106 125 292 311 272 318 0.79 # 67614 # 69641 # -1 # ID=1_76;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.569 1_99 - 188 RrnaAD PF00398.15 262 3.4e-07 22.7 0.0 1 1 3.8e-09 4.5e-07 22.2 0.0 9 113 29 128 26 140 0.90 # 86649 # 87212 # 1 # ID=1_99;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.594 1_53 - 260 IstB_IS21 PF01695.12 178 1e-65 213.6 0.0 1 1 2.2e-67 2.6e-65 212.3 0.0 2 177 56 233 55 234 0.96 # 48364 # 49143 # 1 # ID=1_53;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.618 1_80 - 402 MipZ PF09140.6 261 1.1e-06 21.1 0.4 1 2 3.3e-05 0.0039 9.4 0.1 1 50 110 164 110 192 0.75 # 71873 # 73078 # -1 # ID=1_80;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.481 1_80 - 402 MipZ PF09140.6 261 1.1e-06 21.1 0.4 2 2 2.9e-05 0.0035 9.6 0.0 90 135 237 282 217 287 0.85 # 71873 # 73078 # -1 # ID=1_80;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.481 1_101 - 181 SSB PF00436.20 104 7.9e-41 131.4 0.2 1 1 8.1e-43 9.8e-41 131.1 0.2 1 99 6 105 6 113 0.97 # 87988 # 88530 # 1 # ID=1_101;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.622 1_99 - 188 Methyltransf_18 PF12847.2 112 7.2e-08 26.2 0.0 1 1 9.9e-10 1.2e-07 25.5 0.0 2 107 51 144 50 146 0.90 # 86649 # 87212 # 1 # ID=1_99;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.594 1_37 - 1754 UvrD_C_2 PF13538.1 104 1.1e-07 25.2 0.2 1 1 5.7e-09 6.8e-07 22.6 0.0 3 102 1340 1443 1336 1445 0.77 # 26715 # 31976 # 1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.620 1_74 - 1086 DEAD_2 PF06733.10 174 0.00098 11.7 0.2 1 1 2.2e-05 0.0026 10.3 0.0 122 156 412 444 402 454 0.86 # 63043 # 66300 # -1 # ID=1_74;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.553 1_17 - 880 DUF87 PF01935.12 229 5.5e-06 19.5 0.0 1 2 0.056 6.7 -0.4 0.2 113 171 312 362 304 396 0.60 # 7083 # 9722 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.546 1_17 - 880 DUF87 PF01935.12 229 5.5e-06 19.5 0.0 2 2 3e-07 3.7e-05 16.8 0.0 26 222 484 674 479 681 0.81 # 7083 # 9722 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.546 1_53 - 260 AAA_22 PF13401.1 131 1.5e-06 21.6 0.0 1 2 8.3e-06 0.0005 13.4 0.1 4 28 101 125 98 148 0.75 # 48364 # 49143 # 1 # ID=1_53;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.618 1_53 - 260 AAA_22 PF13401.1 131 1.5e-06 21.6 0.0 2 2 0.0016 0.098 6.0 0.0 77 101 151 178 124 201 0.64 # 48364 # 49143 # 1 # ID=1_53;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.618 1_37 - 1754 AAA_22 PF13401.1 131 0.00031 14.1 0.0 1 2 0.011 0.69 3.2 0.0 89 121 505 536 468 538 0.72 # 26715 # 31976 # 1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.620 1_37 - 1754 AAA_22 PF13401.1 131 0.00031 14.1 0.0 2 2 0.00079 0.047 7.0 0.0 3 28 986 1011 983 1065 0.79 # 26715 # 31976 # 1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.620 1_63 - 237 AAA_15 PF13175.1 415 6.6e-09 28.4 0.0 1 1 7.2e-11 8.7e-09 28.0 0.0 2 46 5 48 4 67 0.90 # 55421 # 56131 # -1 # ID=1_63;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.533 1_87 - 234 N6_N4_Mtase PF01555.13 231 1.4e-32 106.2 0.0 1 2 6.8e-13 8.1e-11 34.9 0.0 1 113 21 130 21 137 0.85 # 79004 # 79705 # 1 # ID=1_87;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.604 1_87 - 234 N6_N4_Mtase PF01555.13 231 1.4e-32 106.2 0.0 2 2 2e-23 2.4e-21 69.4 0.0 170 227 149 206 135 210 0.92 # 79004 # 79705 # 1 # ID=1_87;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.604 1_53 - 260 AAA_17 PF13207.1 121 0.00046 14.2 0.0 1 1 1.3e-05 0.00078 13.4 0.0 2 26 104 131 103 216 0.74 # 48364 # 49143 # 1 # ID=1_53;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.618 1_36 - 771 AAA_17 PF13207.1 121 0.002 12.2 0.7 1 1 8.7e-05 0.0052 10.8 0.1 3 37 189 221 187 355 0.74 # 24403 # 26715 # 1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.567 1_63 - 237 AAA_21 PF13304.1 303 1.6e-05 18.2 0.0 1 1 2.3e-07 2.8e-05 17.3 0.0 2 24 27 49 27 83 0.83 # 55421 # 56131 # -1 # ID=1_63;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.533 1_80 - 402 ArsA_ATPase PF02374.10 305 1.6e-05 17.2 0.0 1 1 3e-07 3.7e-05 16.0 0.0 4 136 113 255 110 257 0.75 # 71873 # 73078 # -1 # ID=1_80;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.481 1_53 - 260 PhoH PF02562.11 205 3.8e-07 22.7 0.1 1 1 5e-09 6e-07 22.0 0.1 14 56 96 138 84 163 0.80 # 48364 # 49143 # 1 # ID=1_53;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.618 1_53 - 260 AFG1_ATPase PF03969.11 362 0.00037 12.5 0.0 1 1 5.8e-06 0.0007 11.6 0.0 64 214 103 251 81 258 0.78 # 48364 # 49143 # 1 # ID=1_53;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.618 1_63 - 237 SMC_N PF02463.14 220 3.2e-10 32.7 0.0 1 1 3.9e-12 4.6e-10 32.2 0.0 2 71 4 69 3 79 0.85 # 55421 # 56131 # -1 # ID=1_63;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.533 1_80 - 402 VirC1 PF07015.6 231 0.00018 13.8 0.0 1 3 0.082 9.9 -1.7 0.0 71 86 57 72 49 82 0.87 # 71873 # 73078 # -1 # ID=1_80;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.481 1_80 - 402 VirC1 PF07015.6 231 0.00018 13.8 0.0 2 3 0.015 1.8 0.7 0.0 4 26 112 134 110 141 0.83 # 71873 # 73078 # -1 # ID=1_80;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.481 1_80 - 402 VirC1 PF07015.6 231 0.00018 13.8 0.0 3 3 3.1e-05 0.0038 9.5 0.0 82 136 244 298 221 316 0.86 # 71873 # 73078 # -1 # ID=1_80;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.481 1_80 - 402 Fer4_NifH PF00142.13 273 1.2e-05 17.7 0.0 1 1 2e-07 2.5e-05 16.7 0.0 7 72 117 187 112 198 0.80 # 71873 # 73078 # -1 # ID=1_80;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.481 1_36 - 771 AAA_16 PF13191.1 185 3.6e-06 20.2 0.0 1 1 2.8e-07 1.7e-05 18.0 0.0 20 56 181 218 179 254 0.78 # 24403 # 26715 # 1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.567 1_53 - 260 AAA_16 PF13191.1 185 1.8e-05 18.0 2.4 1 2 2.4e-06 0.00014 15.0 0.1 23 51 100 128 86 149 0.80 # 48364 # 49143 # 1 # ID=1_53;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.618 1_53 - 260 AAA_16 PF13191.1 185 1.8e-05 18.0 2.4 2 2 0.071 4.2 0.4 0.0 124 162 143 175 125 192 0.74 # 48364 # 49143 # 1 # ID=1_53;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.618 1_63 - 237 AAA_23 PF13476.1 202 1.9e-11 37.8 0.0 1 1 1.6e-13 1.9e-11 37.8 0.0 1 53 6 58 6 202 0.88 # 55421 # 56131 # -1 # ID=1_63;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.533 1_80 - 402 CbiA PF01656.18 195 1e-23 76.9 0.1 1 1 3.7e-25 2.2e-23 75.8 0.0 1 148 112 299 112 346 0.76 # 71873 # 73078 # -1 # ID=1_80;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.481 1_53 - 260 CbiA PF01656.18 195 0.0012 11.5 0.0 1 1 2.5e-05 0.0015 11.1 0.0 3 42 105 145 104 254 0.75 # 48364 # 49143 # 1 # ID=1_53;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.618 1_53 - 260 AAA_14 PF13173.1 128 4.3e-07 23.1 0.0 1 2 1.7e-08 2.1e-06 20.9 0.0 3 97 102 203 100 219 0.64 # 48364 # 49143 # 1 # ID=1_53;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.618 1_53 - 260 AAA_14 PF13173.1 128 4.3e-07 23.1 0.0 2 2 0.048 5.8 0.0 0.0 14 46 215 247 212 257 0.80 # 48364 # 49143 # 1 # ID=1_53;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.618 1_63 - 237 AAA_29 PF13555.1 62 6.5e-08 25.2 0.0 1 1 9.2e-10 1.1e-07 24.5 0.0 2 49 5 50 4 57 0.82 # 55421 # 56131 # -1 # ID=1_63;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.533 1_53 - 260 AAA PF00004.24 132 2.5e-08 27.3 0.0 1 1 4.1e-10 4.9e-08 26.4 0.0 1 70 104 175 104 207 0.82 # 48364 # 49143 # 1 # ID=1_53;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.618 1_53 - 260 Bac_DnaA PF00308.13 219 6.2e-09 28.9 0.0 1 1 7.8e-11 9.3e-09 28.4 0.0 36 136 103 201 90 209 0.84 # 48364 # 49143 # 1 # ID=1_53;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.618 1_76 - 676 N6_Mtase PF02384.11 311 1.7e-52 171.6 0.0 1 1 4.2e-54 2.5e-52 171.0 0.0 5 275 155 460 152 471 0.84 # 67614 # 69641 # -1 # ID=1_76;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.569 1_99 - 188 N6_Mtase PF02384.11 311 0.00045 12.5 0.0 1 2 5.3e-05 0.0032 9.7 0.0 28 71 32 75 21 93 0.82 # 86649 # 87212 # 1 # ID=1_99;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.594 1_99 - 188 N6_Mtase PF02384.11 311 0.00045 12.5 0.0 2 2 0.063 3.8 -0.4 0.0 124 137 111 124 97 132 0.81 # 86649 # 87212 # 1 # ID=1_99;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.594 1_53 - 260 DUF258 PF03193.11 161 0.00025 13.4 0.0 1 1 3.7e-06 0.00044 12.6 0.0 26 59 92 125 80 153 0.82 # 48364 # 49143 # 1 # ID=1_53;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.618 1_36 - 771 TraG-D_C PF12696.2 128 8.3e-20 64.1 0.0 1 1 1.6e-21 1.9e-19 63.0 0.0 1 127 419 541 419 542 0.88 # 24403 # 26715 # 1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.567 1_80 - 402 AAA_31 PF13614.1 157 1.7e-07 24.4 0.3 1 2 2.8e-05 0.0033 10.5 0.0 2 71 111 183 110 211 0.76 # 71873 # 73078 # -1 # ID=1_80;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.481 1_80 - 402 AAA_31 PF13614.1 157 1.7e-07 24.4 0.3 2 2 1.6e-05 0.002 11.3 0.1 110 148 238 275 233 280 0.89 # 71873 # 73078 # -1 # ID=1_80;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.481 1_53 - 260 NTPase_1 PF03266.10 168 0.00028 13.8 0.1 1 2 0.0015 0.18 4.6 0.1 2 30 104 132 103 143 0.82 # 48364 # 49143 # 1 # ID=1_53;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.618 1_53 - 260 NTPase_1 PF03266.10 168 0.00028 13.8 0.1 2 2 0.0003 0.036 6.9 0.0 87 108 155 176 141 202 0.77 # 48364 # 49143 # 1 # ID=1_53;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.618 1_99 - 188 Methyltransf_26 PF13659.1 117 8.2e-14 44.8 0.1 1 1 3.3e-15 1.3e-13 44.2 0.1 2 111 52 144 51 148 0.90 # 86649 # 87212 # 1 # ID=1_99;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.594 1_87 - 234 Methyltransf_26 PF13659.1 117 3.2e-11 36.5 0.2 1 2 9.6e-07 3.8e-05 16.9 0.0 63 113 13 70 3 86 0.72 # 79004 # 79705 # 1 # ID=1_87;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.604 1_87 - 234 Methyltransf_26 PF13659.1 117 3.2e-11 36.5 0.2 2 2 5.9e-07 2.4e-05 17.6 0.1 4 44 174 213 171 228 0.80 # 79004 # 79705 # 1 # ID=1_87;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.604 1_76 - 676 Methyltransf_26 PF13659.1 117 1.4e-08 28.0 0.0 1 1 8.4e-10 3.4e-08 26.7 0.0 4 88 210 310 208 391 0.75 # 67614 # 69641 # -1 # ID=1_76;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.569 1_37 - 1754 AAA_30 PF13604.1 196 1.8e-45 148.0 6.6 1 2 7.8e-07 9.3e-05 15.2 0.8 9 126 424 536 422 561 0.85 # 26715 # 31976 # 1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.620 1_37 - 1754 AAA_30 PF13604.1 196 1.8e-45 148.0 6.6 2 2 2.6e-43 3.1e-41 134.3 0.6 2 186 971 1158 970 1162 0.94 # 26715 # 31976 # 1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.620 1_17 - 880 FtsK_SpoIIIE PF01580.13 205 0.00013 14.6 0.0 1 1 2.7e-06 0.00032 13.3 0.0 39 63 480 506 466 508 0.85 # 7083 # 9722 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.546 1_99 - 188 MTS PF05175.9 170 5.7e-11 35.2 0.0 1 1 6.6e-13 7.9e-11 34.8 0.0 24 142 43 150 38 170 0.84 # 86649 # 87212 # 1 # ID=1_99;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.594 1_63 - 237 DUF2813 PF11398.3 373 7.5e-05 15.0 0.3 1 2 2e-06 0.00024 13.4 0.0 11 49 12 51 3 56 0.79 # 55421 # 56131 # -1 # ID=1_63;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.533 1_63 - 237 DUF2813 PF11398.3 373 7.5e-05 15.0 0.3 2 2 0.041 4.9 -0.8 0.1 94 148 126 180 118 226 0.52 # 55421 # 56131 # -1 # ID=1_63;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.533 1_63 - 237 ABC_tran PF00005.22 137 0.00011 15.7 0.0 1 1 2.8e-06 0.00017 15.1 0.0 15 113 28 155 18 173 0.74 # 55421 # 56131 # -1 # ID=1_63;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.533 1_53 - 260 ABC_tran PF00005.22 137 0.00063 13.2 0.2 1 1 4.1e-05 0.0024 11.3 0.1 8 31 98 121 95 132 0.86 # 48364 # 49143 # 1 # ID=1_53;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.618 1_87 - 234 Cons_hypoth95 PF03602.10 183 4.8e-06 19.2 0.0 1 2 0.00016 0.02 7.4 0.0 113 169 19 77 12 86 0.70 # 79004 # 79705 # 1 # ID=1_87;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.604 1_87 - 234 Cons_hypoth95 PF03602.10 183 4.8e-06 19.2 0.0 2 2 3.1e-05 0.0038 9.8 0.0 20 60 149 188 142 225 0.73 # 79004 # 79705 # 1 # ID=1_87;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.604 1_37 - 1754 AAA_19 PF13245.1 76 2.4e-06 20.4 0.4 1 1 4e-08 2.4e-06 20.4 0.4 8 74 984 1047 976 1051 0.71 # 26715 # 31976 # 1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.620 1_53 - 260 AAA_19 PF13245.1 76 0.00081 12.3 0.2 1 1 5.3e-05 0.0032 10.5 0.0 11 35 103 126 95 157 0.81 # 48364 # 49143 # 1 # ID=1_53;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.618 1_99 - 188 Methyltransf_2 PF00891.13 242 0.0012 11.1 0.0 1 1 1.5e-05 0.0018 10.6 0.0 111 159 60 110 40 126 0.84 # 86649 # 87212 # 1 # ID=1_99;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.594 1_17 - 880 AAA_10 PF12846.2 304 9.3e-46 149.7 0.0 1 1 3.7e-47 1.5e-45 149.1 0.0 1 294 481 773 481 779 0.85 # 7083 # 9722 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.546 1_36 - 771 AAA_10 PF12846.2 304 2.6e-09 30.1 0.0 1 1 1.9e-08 7.5e-07 22.0 0.0 3 296 187 494 186 499 0.63 # 24403 # 26715 # 1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.567 1_53 - 260 AAA_10 PF12846.2 304 4.4e-05 16.1 0.2 1 2 0.043 1.7 1.1 0.0 106 155 28 69 4 89 0.61 # 48364 # 49143 # 1 # ID=1_53;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.618 1_53 - 260 AAA_10 PF12846.2 304 4.4e-05 16.1 0.2 2 2 1.3e-05 0.00053 12.6 0.1 3 35 103 135 101 172 0.84 # 48364 # 49143 # 1 # ID=1_53;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.618 1_74 - 1086 ResIII PF04851.10 184 1.6e-14 47.3 1.7 1 2 4.8e-16 5.8e-14 45.5 0.1 3 183 295 498 293 499 0.78 # 63043 # 66300 # -1 # ID=1_74;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.553 1_74 - 1086 ResIII PF04851.10 184 1.6e-14 47.3 1.7 2 2 0.034 4 0.3 0.1 138 161 655 678 587 708 0.71 # 63043 # 66300 # -1 # ID=1_74;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.553 1_36 - 771 TrwB_AAD_bind PF10412.4 386 1.2e-148 488.0 0.0 1 1 2.5e-150 1.5e-148 487.6 0.0 2 386 172 561 171 561 0.99 # 24403 # 26715 # 1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.567 1_17 - 880 TrwB_AAD_bind PF10412.4 386 1.8e-05 16.6 0.2 1 1 8e-07 4.8e-05 15.2 0.0 16 91 482 553 474 569 0.71 # 7083 # 9722 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.546 1_37 - 1754 AAA_11 PF13086.1 236 1.3e-05 18.0 0.1 1 1 7.3e-07 8.8e-05 15.3 0.0 2 75 971 1041 970 1064 0.81 # 26715 # 31976 # 1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.620 1_53 - 260 Sigma54_activ_2 PF14532.1 138 0.00047 13.4 0.0 1 1 6.3e-06 0.00075 12.7 0.0 9 64 87 144 84 229 0.70 # 48364 # 49143 # 1 # ID=1_53;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.618 1_36 - 771 T4SS-DNA_transf PF02534.9 469 1.6e-08 26.6 0.0 1 2 0.08 9.6 -2.3 0.0 130 199 262 330 253 360 0.69 # 24403 # 26715 # 1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.567 1_36 - 771 T4SS-DNA_transf PF02534.9 469 1.6e-08 26.6 0.0 2 2 3.3e-10 4e-08 25.3 0.0 274 393 392 507 361 559 0.74 # 24403 # 26715 # 1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.567 1_99 - 188 TIGR00755 TIGR00755 256 1.2e-07 24.1 0.0 1 1 1.3e-09 1.6e-07 23.7 0.0 8 105 29 123 26 128 0.89 # 86649 # 87212 # 1 # ID=1_99;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.594 1_17 - 880 Pox_A32 PF04665.7 241 9e-05 15.0 0.0 1 1 1.5e-06 0.00018 14.0 0.0 6 40 474 508 470 523 0.82 # 7083 # 9722 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.546 1_53 - 260 AAA_24 PF13479.1 213 0.0016 11.2 0.1 1 1 3e-05 0.0037 10.0 0.1 5 23 103 121 99 127 0.85 # 48364 # 49143 # 1 # ID=1_53;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.618 1_74 - 1086 UvrD-helicase PF00580.16 315 5.9e-05 15.6 1.3 1 1 1.2e-06 0.00015 14.3 0.2 20 271 324 782 308 794 0.68 # 63043 # 66300 # -1 # ID=1_74;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.553 1_53 - 260 NACHT PF05729.7 166 0.00015 14.6 0.0 1 1 2.1e-06 0.00025 13.9 0.0 3 49 104 151 102 200 0.81 # 48364 # 49143 # 1 # ID=1_53;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.618 1_53 - 260 AAA_25 PF13481.1 194 8.6e-07 21.7 0.1 1 1 2.2e-08 2.7e-06 20.1 0.1 9 60 72 128 68 201 0.77 # 48364 # 49143 # 1 # ID=1_53;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.618 1_87 - 234 Methyltransf_15 PF09445.5 164 0.00089 12.0 0.0 1 2 0.023 2.8 0.6 0.0 53 80 4 30 2 38 0.91 # 79004 # 79705 # 1 # ID=1_87;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.604 1_87 - 234 Methyltransf_15 PF09445.5 164 0.00089 12.0 0.0 2 2 7e-05 0.0084 8.8 0.0 3 30 173 200 171 213 0.90 # 79004 # 79705 # 1 # ID=1_87;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.604 1_74 - 1086 SNF2_N PF00176.18 299 0.00028 12.9 0.2 1 1 5.3e-06 0.00064 11.7 0.2 1 159 299 459 299 469 0.71 # 63043 # 66300 # -1 # ID=1_74;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.553 1_53 - 260 AAA_28 PF13521.1 163 0.0003 13.9 0.0 1 1 5e-06 0.0006 13.0 0.0 1 49 103 156 103 171 0.73 # 48364 # 49143 # 1 # ID=1_53;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.618 1_53 - 260 AAA_5 PF07728.9 139 2.2e-05 17.4 0.0 1 1 4.6e-07 5.5e-05 16.1 0.0 1 74 103 172 103 177 0.80 # 48364 # 49143 # 1 # ID=1_53;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.618 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/cdb0e4e7-e71b-490d-96a4-6a2f81fc1024 # Target file: checkm_output/bins/pm56/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm56/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/cdb0e4e7-e71b-490d-96a4-6a2f81fc1024 checkm_output/bins/pm56/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 17:07:20 2020 # [ok]