# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_2 - 188 Methyltransf_12 PF08242.7 99 3.8e-05 16.8 0.0 1 1 6.8e-07 5.7e-05 16.3 0.0 1 99 55 144 55 144 0.82 # 478 # 1041 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.576 1_11 - 228 UPF0020 PF01170.13 180 5.6e-06 18.7 0.0 1 2 0.00016 0.014 7.6 0.0 104 119 18 33 7 88 0.73 # 6681 # 7364 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.579 1_11 - 228 UPF0020 PF01170.13 180 5.6e-06 18.7 0.0 2 2 5.9e-05 0.005 9.1 0.0 28 54 163 188 158 220 0.66 # 6681 # 7364 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.579 1_2 - 188 RrnaAD PF00398.15 262 1.8e-09 29.6 0.0 1 1 2.7e-11 2.2e-09 29.3 0.0 9 113 29 128 24 150 0.89 # 478 # 1041 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.576 1_21 - 244 FeoB_N PF02421.13 156 0.00051 12.0 0.1 1 1 1.1e-05 0.00091 11.2 0.1 3 33 36 63 34 95 0.86 # 15734 # 16465 # 1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.357 3_9 - 176 SSB PF00436.20 104 2e-41 132.8 0.4 1 1 3.4e-43 2.8e-41 132.3 0.4 1 101 6 109 6 112 0.96 # 7217 # 7744 # -1 # ID=3_9;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.576 1_2 - 188 Methyltransf_18 PF12847.2 112 3.9e-10 33.0 0.0 1 1 9.6e-12 8.1e-10 32.0 0.0 4 109 53 146 50 148 0.88 # 478 # 1041 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.576 1_37 - 1757 UvrD_C_2 PF13538.1 104 1.1e-07 24.6 0.7 1 2 0.013 1.1 2.2 0.0 6 44 1227 1265 1223 1295 0.74 # 25966 # 31236 # -1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.599 1_37 - 1757 UvrD_C_2 PF13538.1 104 1.1e-07 24.6 0.7 2 2 5.2e-08 4.4e-06 19.5 0.2 3 102 1341 1444 1339 1446 0.77 # 25966 # 31236 # -1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.599 1_11 - 228 Methyltransf_11 PF08241.7 95 0.00059 13.0 0.0 1 2 0.0024 0.21 4.9 0.0 78 93 53 68 48 70 0.84 # 6681 # 7364 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.579 1_11 - 228 Methyltransf_11 PF08241.7 95 0.00059 13.0 0.0 2 2 0.0014 0.12 5.7 0.0 5 54 172 220 168 226 0.82 # 6681 # 7364 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.579 1_21 - 244 AAA_15 PF13175.1 415 1.5e-05 16.8 8.5 1 2 5.1e-05 0.0043 8.7 2.1 12 53 23 65 7 144 0.62 # 15734 # 16465 # 1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.357 1_21 - 244 AAA_15 PF13175.1 415 1.5e-05 16.8 8.5 2 2 3.2e-06 0.00027 12.7 0.2 342 411 133 193 98 194 0.76 # 15734 # 16465 # 1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.357 1_11 - 228 N6_N4_Mtase PF01555.13 231 1.7e-36 118.4 0.0 1 2 1.9e-15 1.6e-13 43.3 0.0 1 114 21 124 21 133 0.89 # 6681 # 7364 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.579 1_11 - 228 N6_N4_Mtase PF01555.13 231 1.7e-36 118.4 0.0 2 2 1.2e-24 9.8e-23 73.4 0.0 169 228 141 200 126 203 0.90 # 6681 # 7364 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.579 1_38 - 742 AAA_17 PF13207.1 121 0.00027 14.4 0.0 1 1 8.7e-06 0.00073 13.0 0.0 3 28 189 218 187 303 0.70 # 31236 # 33461 # -1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.525 1_21 - 244 AAA_21 PF13304.1 303 4.7e-15 48.9 3.6 1 2 1.6e-06 0.00014 14.6 1.7 2 26 36 61 35 131 0.65 # 15734 # 16465 # 1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.357 1_21 - 244 AAA_21 PF13304.1 303 4.7e-15 48.9 3.6 2 2 1.4e-12 1.2e-10 34.5 0.0 189 297 120 192 97 197 0.80 # 15734 # 16465 # 1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.357 1_38 - 742 MobB PF03205.9 140 0.00088 11.7 0.0 1 1 2.7e-05 0.0022 10.4 0.0 7 34 192 219 188 225 0.89 # 31236 # 33461 # -1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.525 1_38 - 742 Zeta_toxin PF06414.7 201 0.00071 11.3 0.0 1 1 3.5e-05 0.003 9.3 0.0 21 49 190 219 182 236 0.85 # 31236 # 33461 # -1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.525 1_21 - 244 SMC_N PF02463.14 220 9.5e-06 17.6 0.3 1 3 0.00059 0.049 5.4 0.1 26 44 35 53 23 67 0.83 # 15734 # 16465 # 1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.357 1_21 - 244 SMC_N PF02463.14 220 9.5e-06 17.6 0.3 2 3 7.5e-05 0.0063 8.4 0.0 137 188 133 182 87 198 0.87 # 15734 # 16465 # 1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.357 1_21 - 244 SMC_N PF02463.14 220 9.5e-06 17.6 0.3 3 3 0.031 2.6 -0.2 0.0 46 81 204 237 198 242 0.73 # 15734 # 16465 # 1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.357 1_38 - 742 AAA_16 PF13191.1 185 3.3e-06 19.9 0.0 1 1 4.1e-07 1.7e-05 17.5 0.0 21 60 182 222 179 263 0.81 # 31236 # 33461 # -1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.525 2_14 - 107 AAA_16 PF13191.1 185 0.00086 12.0 0.1 1 1 3.2e-05 0.0013 11.3 0.1 22 48 70 96 61 103 0.88 # 8172 # 8492 # 1 # ID=2_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.424 1_21 - 244 AAA_23 PF13476.1 202 9e-08 25.3 1.7 1 1 1.6e-09 1.3e-07 24.7 1.7 13 113 26 142 21 237 0.67 # 15734 # 16465 # 1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.357 1_21 - 244 AAA_29 PF13555.1 62 0.00015 14.0 0.0 1 1 4e-06 0.00034 12.8 0.0 15 40 26 50 22 53 0.78 # 15734 # 16465 # 1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.357 1_21 - 244 MMR_HSR1 PF01926.18 116 0.00014 14.5 0.7 1 1 3e-06 0.00025 13.7 0.7 2 38 36 68 35 237 0.87 # 15734 # 16465 # 1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.357 1_2 - 188 N6_Mtase PF02384.11 311 0.00015 13.5 0.0 1 2 1.5e-05 0.0013 10.5 0.0 28 63 32 67 21 80 0.87 # 478 # 1041 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.576 1_2 - 188 N6_Mtase PF02384.11 311 0.00015 13.5 0.0 2 2 0.018 1.5 0.4 0.0 127 137 114 124 102 134 0.82 # 478 # 1041 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.576 1_21 - 244 DUF258 PF03193.11 161 0.0001 14.2 0.1 1 1 2e-06 0.00017 13.5 0.1 23 67 20 65 4 84 0.78 # 15734 # 16465 # 1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.357 1_38 - 742 TraG-D_C PF12696.2 128 6.5e-21 67.2 0.0 1 1 1.4e-22 1.2e-20 66.4 0.0 1 127 419 541 419 542 0.86 # 31236 # 33461 # -1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.525 2_14 - 107 KTI12 PF08433.5 270 0.00064 11.6 0.1 1 1 1.1e-05 0.00095 11.0 0.1 5 30 76 101 75 104 0.87 # 8172 # 8492 # 1 # ID=2_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.424 1_2 - 188 Methyltransf_26 PF13659.1 117 3.4e-14 45.6 0.1 1 1 1.4e-15 6e-14 44.8 0.1 2 114 52 147 51 150 0.90 # 478 # 1041 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.576 1_11 - 228 Methyltransf_26 PF13659.1 117 1.2e-12 40.6 0.1 1 2 7e-08 3e-06 20.0 0.0 54 114 4 71 2 74 0.73 # 6681 # 7364 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.579 1_11 - 228 Methyltransf_26 PF13659.1 117 1.2e-12 40.6 0.1 2 2 1.9e-07 8.1e-06 18.6 0.0 4 44 167 206 164 222 0.82 # 6681 # 7364 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.579 1_37 - 1757 AAA_30 PF13604.1 196 1.3e-44 144.8 15.4 1 3 0.047 2 0.6 0.0 41 86 223 269 218 280 0.84 # 25966 # 31236 # -1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.599 1_37 - 1757 AAA_30 PF13604.1 196 1.3e-44 144.8 15.4 2 3 1.9e-05 0.0008 11.6 3.9 7 146 420 551 416 561 0.81 # 25966 # 31236 # -1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.599 1_37 - 1757 AAA_30 PF13604.1 196 1.3e-44 144.8 15.4 3 3 9.9e-44 4.1e-42 136.6 1.9 1 186 968 1156 968 1162 0.94 # 25966 # 31236 # -1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.599 1_38 - 742 AAA_30 PF13604.1 196 0.00052 12.3 0.0 1 1 2.6e-05 0.0011 11.2 0.0 21 57 188 224 180 230 0.85 # 31236 # 33461 # -1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.525 1_2 - 188 MTS PF05175.9 170 6.6e-09 28.0 0.0 1 1 1.1e-10 9.2e-09 27.5 0.0 31 142 50 150 41 167 0.84 # 478 # 1041 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.576 1_2 - 188 Met_10 PF02475.11 200 0.00077 11.7 0.0 1 1 1.3e-05 0.0011 11.2 0.0 99 189 48 132 38 145 0.79 # 478 # 1041 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.576 1_21 - 244 ABC_tran PF00005.22 137 4.5e-24 78.0 0.0 1 1 7.6e-26 6.4e-24 77.5 0.0 2 136 24 162 23 163 0.93 # 15734 # 16465 # 1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.357 1_11 - 228 Cons_hypoth95 PF03602.10 183 5.2e-06 18.6 0.0 1 2 0.00031 0.026 6.6 0.0 113 146 19 54 5 82 0.66 # 6681 # 7364 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.579 1_11 - 228 Cons_hypoth95 PF03602.10 183 5.2e-06 18.6 0.0 2 2 2.4e-05 0.002 10.2 0.0 41 76 162 199 145 220 0.73 # 6681 # 7364 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.579 1_37 - 1757 AAA_19 PF13245.1 76 1.5e-07 23.8 2.0 1 1 1.1e-08 4.7e-07 22.2 0.5 7 76 981 1047 974 1047 0.74 # 25966 # 31236 # -1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.599 2_14 - 107 AAA_19 PF13245.1 76 0.00046 12.6 0.0 1 1 1.6e-05 0.00069 12.1 0.0 13 37 75 99 66 106 0.78 # 8172 # 8492 # 1 # ID=2_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.424 1_38 - 742 AAA_10 PF12846.2 304 1.2e-10 33.9 0.0 1 1 3.1e-11 2.6e-09 29.5 0.0 3 296 187 494 186 500 0.68 # 31236 # 33461 # -1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.525 1_2 - 188 Methyltransf_31 PF13847.1 152 8.8e-07 21.3 0.0 1 1 1.3e-08 1.1e-06 21.0 0.0 5 118 52 156 48 183 0.86 # 478 # 1041 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.576 1_37 - 1757 Viral_helicase1 PF01443.13 234 0.00032 12.9 0.0 1 2 0.00014 0.012 7.8 0.0 1 118 988 1121 988 1212 0.52 # 25966 # 31236 # -1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.599 1_37 - 1757 Viral_helicase1 PF01443.13 234 0.00032 12.9 0.0 2 2 0.0066 0.55 2.3 0.0 171 234 1387 1447 1342 1447 0.63 # 25966 # 31236 # -1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.599 1_38 - 742 TrwB_AAD_bind PF10412.4 386 3.1e-150 492.7 0.0 1 1 4.6e-152 3.8e-150 492.4 0.0 2 386 172 561 171 561 0.99 # 31236 # 33461 # -1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.525 1_37 - 1757 AAA_11 PF13086.1 236 0.00018 13.8 0.0 1 1 2.1e-06 0.00018 13.8 0.0 2 75 969 1039 968 1059 0.81 # 25966 # 31236 # -1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.599 1_38 - 742 T4SS-DNA_transf PF02534.9 469 6.2e-10 30.8 0.0 1 1 1.9e-11 1.6e-09 29.4 0.0 264 361 382 476 198 500 0.82 # 31236 # 33461 # -1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.525 1_2 - 188 TIGR00755 TIGR00755 256 1.5e-08 26.5 0.0 1 1 2.4e-10 2e-08 26.1 0.0 8 105 29 123 25 134 0.89 # 478 # 1041 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.576 1_11 - 228 MethyltransfD12 PF02086.10 260 0.00045 12.4 0.0 1 2 0.022 1.9 0.5 0.0 178 188 21 31 14 89 0.83 # 6681 # 7364 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.579 1_11 - 228 MethyltransfD12 PF02086.10 260 0.00045 12.4 0.0 2 2 3.7e-05 0.0031 9.6 0.0 20 46 163 189 148 198 0.78 # 6681 # 7364 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.579 1_2 - 188 Methyltransf_23 PF13489.1 161 4.2e-05 16.0 0.0 1 1 6.5e-07 5.4e-05 15.6 0.0 9 119 38 152 27 166 0.78 # 478 # 1041 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.576 1_21 - 244 UPF0079 PF02367.12 123 0.00017 13.9 0.2 1 1 4.5e-06 0.00038 12.8 0.2 9 37 27 55 22 65 0.81 # 15734 # 16465 # 1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.357 1_11 - 228 Methyltransf_15 PF09445.5 164 0.00038 12.7 0.0 1 2 0.012 1 1.5 0.0 53 79 4 29 2 33 0.91 # 6681 # 7364 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.579 1_11 - 228 Methyltransf_15 PF09445.5 164 0.00038 12.7 0.0 2 2 7e-05 0.0058 8.8 0.0 3 31 166 194 164 208 0.86 # 6681 # 7364 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.579 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/6433fc26-4865-4178-b3f7-df33e3debbf0 # Target file: checkm_output/bins/pm546/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm546/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/6433fc26-4865-4178-b3f7-df33e3debbf0 checkm_output/bins/pm546/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 17:07:10 2020 # [ok]