# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 3_7 - 228 UPF0020 PF01170.13 180 1.3e-05 17.4 0.0 1 2 0.0005 0.04 6.1 0.0 103 117 17 31 4 71 0.83 # 2330 # 3013 # -1 # ID=3_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.579 3_7 - 228 UPF0020 PF01170.13 180 1.3e-05 17.4 0.0 2 2 4.7e-05 0.0038 9.4 0.0 28 54 163 189 158 223 0.65 # 2330 # 3013 # -1 # ID=3_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.579 2_3 - 707 ABC_ATPase PF09818.4 448 0.00016 12.9 0.2 1 2 0.00092 0.075 4.1 0.0 241 265 491 516 477 523 0.90 # 2200 # 4320 # -1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.372 2_3 - 707 ABC_ATPase PF09818.4 448 0.00016 12.9 0.2 2 2 0.00018 0.014 6.5 0.0 304 366 586 652 574 681 0.71 # 2200 # 4320 # -1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.372 1_6 - 1110 UvrD_C_2 PF13538.1 104 4.4e-05 16.2 0.3 1 2 0.0075 0.61 2.9 0.0 6 44 912 950 908 980 0.74 # 4305 # 7634 # 1 # ID=1_6;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.598 1_6 - 1110 UvrD_C_2 PF13538.1 104 4.4e-05 16.2 0.3 2 2 3.9e-05 0.0031 10.3 0.1 3 67 1026 1093 1024 1095 0.71 # 4305 # 7634 # 1 # ID=1_6;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.598 2_3 - 707 DUF87 PF01935.12 229 0.00021 13.8 0.1 1 1 2.6e-06 0.00021 13.8 0.1 26 61 498 531 481 532 0.80 # 2200 # 4320 # -1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.372 2_3 - 707 AAA_22 PF13401.1 131 2.8e-05 16.9 0.3 1 1 2.3e-06 0.00018 14.2 0.3 7 106 498 642 492 667 0.66 # 2200 # 4320 # -1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.372 3_7 - 228 Methyltransf_11 PF08241.7 95 0.00043 13.4 0.0 1 2 0.0055 0.45 3.7 0.0 79 93 54 68 46 70 0.83 # 2330 # 3013 # -1 # ID=3_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.579 3_7 - 228 Methyltransf_11 PF08241.7 95 0.00043 13.4 0.0 2 2 0.00048 0.039 7.1 0.0 5 58 172 224 168 227 0.86 # 2330 # 3013 # -1 # ID=3_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.579 2_3 - 707 PRK PF00485.13 194 0.0006 12.0 0.0 1 1 1.4e-05 0.0012 11.0 0.0 1 22 497 518 497 537 0.84 # 2200 # 4320 # -1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.372 3_7 - 228 N6_N4_Mtase PF01555.13 231 3.7e-35 114.0 0.0 1 2 2.8e-13 2.3e-11 36.2 0.0 1 113 21 123 21 129 0.84 # 2330 # 3013 # -1 # ID=3_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.579 3_7 - 228 N6_N4_Mtase PF01555.13 231 3.7e-35 114.0 0.0 2 2 1.9e-25 1.5e-23 76.0 0.0 169 228 141 200 125 203 0.90 # 2330 # 3013 # -1 # ID=3_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.579 2_3 - 707 AAA_17 PF13207.1 121 4.5e-08 26.6 0.0 1 1 2.8e-09 1.1e-07 25.3 0.0 1 53 497 552 497 601 0.70 # 2200 # 4320 # -1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.372 1_4 - 610 AAA_17 PF13207.1 121 0.00021 14.8 0.0 1 1 1.7e-05 0.0007 13.1 0.0 3 27 69 97 67 148 0.68 # 1553 # 3382 # 1 # ID=1_4;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.537 2_3 - 707 AAA_21 PF13304.1 303 1e-09 31.3 0.1 1 1 6.9e-09 5.6e-07 22.3 0.1 2 297 498 662 497 667 0.87 # 2200 # 4320 # -1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.372 2_3 - 707 MobB PF03205.9 140 0.00065 12.0 0.4 1 1 4.5e-05 0.0018 10.6 0.1 2 21 497 516 496 524 0.87 # 2200 # 4320 # -1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.372 1_4 - 610 MobB PF03205.9 140 0.00075 11.8 0.0 1 1 4.2e-05 0.0017 10.7 0.0 7 34 72 99 68 105 0.89 # 1553 # 3382 # 1 # ID=1_4;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.537 1_4 - 610 Zeta_toxin PF06414.7 201 0.00047 11.9 0.0 1 1 2.8e-05 0.0023 9.6 0.0 21 49 70 99 62 116 0.85 # 1553 # 3382 # 1 # ID=1_4;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.537 2_3 - 707 SMC_N PF02463.14 220 4.1e-09 28.5 1.5 1 2 0.0011 0.089 4.6 0.3 26 42 497 513 485 526 0.83 # 2200 # 4320 # -1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.372 2_3 - 707 SMC_N PF02463.14 220 4.1e-09 28.5 1.5 2 2 3.1e-09 2.5e-07 22.7 0.0 136 210 605 675 516 682 0.74 # 2200 # 4320 # -1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.372 1_4 - 610 AAA_16 PF13191.1 185 3.2e-06 19.8 0.0 1 1 3.1e-07 1.3e-05 17.9 0.0 21 61 62 103 59 145 0.80 # 1553 # 3382 # 1 # ID=1_4;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.537 2_3 - 707 AAA_16 PF13191.1 185 0.00019 14.0 0.0 1 1 1e-05 0.00042 12.9 0.0 24 106 495 587 489 660 0.57 # 2200 # 4320 # -1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.372 2_3 - 707 AAA_18 PF13238.1 129 4.8e-06 19.5 1.9 1 3 9.2e-07 7.4e-05 15.7 0.5 1 20 498 517 498 534 0.77 # 2200 # 4320 # -1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.372 2_3 - 707 AAA_18 PF13238.1 129 4.8e-06 19.5 1.9 2 3 0.094 7.6 -0.5 0.0 73 100 523 549 519 580 0.79 # 2200 # 4320 # -1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.372 2_3 - 707 AAA_18 PF13238.1 129 4.8e-06 19.5 1.9 3 3 0.046 3.7 0.5 0.0 47 91 632 672 614 682 0.79 # 2200 # 4320 # -1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.372 2_3 - 707 AAA_29 PF13555.1 62 3.8e-05 15.8 0.4 1 1 1.5e-06 0.00012 14.2 0.1 22 40 494 512 486 525 0.83 # 2200 # 4320 # -1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.372 2_3 - 707 DUF258 PF03193.11 161 1.9e-05 16.5 0.7 1 2 2.2e-06 0.00018 13.3 0.0 26 66 485 526 467 531 0.79 # 2200 # 4320 # -1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.372 2_3 - 707 DUF258 PF03193.11 161 1.9e-05 16.5 0.7 2 2 0.019 1.6 0.5 0.0 23 49 581 607 561 608 0.81 # 2200 # 4320 # -1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.372 1_4 - 610 TraG-D_C PF12696.2 128 4.6e-21 67.7 0.0 1 1 1e-22 8.4e-21 66.8 0.0 1 127 299 421 299 422 0.86 # 1553 # 3382 # 1 # ID=1_4;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.537 3_7 - 228 Methyltransf_26 PF13659.1 117 1.8e-11 36.7 0.1 1 2 6.7e-07 5.4e-05 15.8 0.0 57 114 7 71 2 74 0.68 # 2330 # 3013 # -1 # ID=3_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.579 3_7 - 228 Methyltransf_26 PF13659.1 117 1.8e-11 36.7 0.1 2 2 8.3e-08 6.7e-06 18.8 0.0 4 45 167 207 164 224 0.81 # 2330 # 3013 # -1 # ID=3_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.579 1_6 - 1110 AAA_30 PF13604.1 196 3.5e-44 143.3 10.2 1 2 6e-06 0.00024 13.3 2.4 7 132 105 224 101 244 0.86 # 4305 # 7634 # 1 # ID=1_6;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.598 1_6 - 1110 AAA_30 PF13604.1 196 3.5e-44 143.3 10.2 2 2 5.9e-43 2.4e-41 134.1 1.0 1 186 653 841 653 855 0.94 # 4305 # 7634 # 1 # ID=1_6;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.598 1_4 - 610 AAA_30 PF13604.1 196 0.00044 12.5 0.0 1 1 2.1e-05 0.00084 11.5 0.0 21 57 68 104 60 110 0.85 # 1553 # 3382 # 1 # ID=1_4;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.537 2_3 - 707 ABC_tran PF00005.22 137 2.5e-37 120.9 0.1 1 1 6.8e-39 5.5e-37 119.7 0.1 1 137 485 634 485 634 0.89 # 2200 # 4320 # -1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.372 3_7 - 228 Cons_hypoth95 PF03602.10 183 2.2e-05 16.5 0.0 1 2 0.00059 0.047 5.6 0.0 112 127 18 33 9 81 0.68 # 2330 # 3013 # -1 # ID=3_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.579 3_7 - 228 Cons_hypoth95 PF03602.10 183 2.2e-05 16.5 0.0 2 2 5.6e-05 0.0045 9.0 0.0 42 63 163 184 145 221 0.76 # 2330 # 3013 # -1 # ID=3_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.579 1_6 - 1110 AAA_19 PF13245.1 76 3.9e-07 22.4 1.3 1 1 1.4e-08 1.1e-06 21.0 0.3 7 76 666 732 659 732 0.75 # 4305 # 7634 # 1 # ID=1_6;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.598 1_4 - 610 AAA_10 PF12846.2 304 7.9e-11 34.5 0.0 1 1 6e-11 2.4e-09 29.6 0.0 3 296 67 374 66 380 0.67 # 1553 # 3382 # 1 # ID=1_4;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.537 2_3 - 707 AAA_10 PF12846.2 304 0.00015 13.8 0.1 1 2 2.7e-05 0.0011 11.0 0.0 6 25 500 519 497 532 0.79 # 2200 # 4320 # -1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.372 2_3 - 707 AAA_10 PF12846.2 304 0.00015 13.8 0.1 2 2 0.06 2.4 0.0 0.0 217 257 620 659 594 674 0.70 # 2200 # 4320 # -1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.372 2_3 - 707 SbcCD_C PF13558.1 90 0.00044 12.8 0.1 1 1 5.2e-05 0.0042 9.7 0.1 61 86 621 646 592 650 0.81 # 2200 # 4320 # -1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.372 1_4 - 610 TrwB_AAD_bind PF10412.4 386 3.1e-149 489.3 0.0 1 1 4.6e-151 3.7e-149 489.0 0.0 2 386 52 441 51 441 0.99 # 1553 # 3382 # 1 # ID=1_4;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.537 1_6 - 1110 AAA_11 PF13086.1 236 0.00014 14.1 0.0 1 1 5.6e-06 0.00045 12.4 0.0 2 75 654 724 653 746 0.80 # 4305 # 7634 # 1 # ID=1_6;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.598 1_4 - 610 T4SS-DNA_transf PF02534.9 469 1.8e-10 32.5 0.0 1 1 5.3e-12 4.3e-10 31.3 0.0 250 361 242 356 78 380 0.77 # 1553 # 3382 # 1 # ID=1_4;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.537 3_7 - 228 MethyltransfD12 PF02086.10 260 0.00037 12.6 0.0 1 2 0.027 2.2 0.2 0.1 175 188 18 31 8 38 0.80 # 2330 # 3013 # -1 # ID=3_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.579 3_7 - 228 MethyltransfD12 PF02086.10 260 0.00037 12.6 0.0 2 2 3.3e-05 0.0027 9.8 0.0 20 46 163 189 148 198 0.78 # 2330 # 3013 # -1 # ID=3_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.579 2_3 - 707 ArgK PF03308.11 267 0.00019 12.8 0.0 1 1 4.4e-06 0.00036 11.9 0.0 15 52 481 518 473 528 0.84 # 2200 # 4320 # -1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.372 2_3 - 707 RNA_helicase PF00910.17 107 0.00097 12.0 0.8 1 2 0.00027 0.022 7.6 0.0 3 19 500 516 498 530 0.86 # 2200 # 4320 # -1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.372 2_3 - 707 RNA_helicase PF00910.17 107 0.00097 12.0 0.8 2 2 0.018 1.5 1.7 0.1 48 104 622 676 618 678 0.77 # 2200 # 4320 # -1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.372 2_3 - 707 AAA_25 PF13481.1 194 0.00018 13.5 0.0 1 2 2.3e-05 0.0019 10.2 0.0 29 50 491 512 482 532 0.88 # 2200 # 4320 # -1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.372 2_3 - 707 AAA_25 PF13481.1 194 0.00018 13.5 0.0 2 2 0.031 2.5 0.0 0.0 134 188 617 662 586 663 0.76 # 2200 # 4320 # -1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.372 3_7 - 228 Methyltransf_15 PF09445.5 164 0.00054 12.1 0.0 1 2 0.042 3.4 -0.2 0.0 53 79 4 29 2 33 0.90 # 2330 # 3013 # -1 # ID=3_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.579 3_7 - 228 Methyltransf_15 PF09445.5 164 0.00054 12.1 0.0 2 2 3.7e-05 0.003 9.7 0.0 2 31 165 194 164 208 0.86 # 2330 # 3013 # -1 # ID=3_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.579 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/cbd6b348-ae8a-4ecf-b08f-4fc08f050a6b # Target file: checkm_output/bins/pm541/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm541/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/cbd6b348-ae8a-4ecf-b08f-4fc08f050a6b checkm_output/bins/pm541/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 17:07:08 2020 # [ok]