# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_101 - 1096 UPF0020 PF01170.13 180 0.00022 13.9 0.0 1 2 0.0046 0.54 2.9 0.0 28 50 851 873 848 910 0.87 # 79584 # 82871 # -1 # ID=1_101;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.471 1_101 - 1096 UPF0020 PF01170.13 180 0.00022 13.9 0.0 2 2 0.00012 0.015 8.0 0.0 86 116 978 1008 973 1014 0.91 # 79584 # 82871 # -1 # ID=1_101;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.471 1_51 - 495 Terminase_6 PF03237.10 384 2.1e-06 19.8 0.1 1 1 3.9e-08 4.6e-06 18.7 0.1 6 317 58 380 55 426 0.74 # 47245 # 48729 # -1 # ID=1_51;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.479 1_109 - 399 MipZ PF09140.6 261 7.2e-09 28.2 0.1 1 2 4.6e-05 0.0054 8.9 0.0 1 51 109 164 109 187 0.77 # 88822 # 90018 # 1 # ID=1_109;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.456 1_109 - 399 MipZ PF09140.6 261 7.2e-09 28.2 0.1 2 2 1.4e-07 1.7e-05 17.2 0.0 82 135 228 281 213 289 0.86 # 88822 # 90018 # 1 # ID=1_109;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.456 1_29 - 163 SSB PF00436.20 104 4.1e-43 138.7 0.3 1 1 4.6e-45 5.5e-43 138.3 0.3 1 100 6 109 6 113 0.96 # 27560 # 28048 # -1 # ID=1_29;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.491 1_101 - 1096 DNA_methylase PF00145.12 335 9.9e-32 103.4 0.0 1 3 3.5e-10 4.2e-08 25.8 0.0 5 71 8 78 6 81 0.94 # 79584 # 82871 # -1 # ID=1_101;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.471 1_101 - 1096 DNA_methylase PF00145.12 335 9.9e-32 103.4 0.0 2 3 2.1e-10 2.4e-08 26.5 0.0 71 119 419 476 415 486 0.90 # 79584 # 82871 # -1 # ID=1_101;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.471 1_101 - 1096 DNA_methylase PF00145.12 335 9.9e-32 103.4 0.0 3 3 3.4e-15 4e-13 42.2 0.0 136 304 533 753 528 805 0.55 # 79584 # 82871 # -1 # ID=1_101;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.471 1_37 - 1315 Helicase_C PF00271.26 78 1.8e-09 30.5 0.3 1 1 7e-11 8.3e-09 28.4 0.0 16 78 1169 1232 1150 1232 0.85 # 34422 # 38366 # 1 # ID=1_37;partial=00;start_type=GTG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.529 1_109 - 399 ArsA_ATPase PF02374.10 305 0.00052 12.2 0.0 1 1 1.2e-05 0.0014 10.8 0.0 4 52 111 166 108 255 0.74 # 88822 # 90018 # 1 # ID=1_109;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.456 1_22 - 640 AAA_13 PF13166.1 712 0.0057 8.2 9.1 1 2 1.1e-05 0.0014 10.3 5.4 378 465 199 281 158 284 0.62 # 19198 # 21117 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.521 1_22 - 640 AAA_13 PF13166.1 712 0.0057 8.2 9.1 2 2 0.05 5.9 -1.8 0.1 368 398 563 593 514 634 0.53 # 19198 # 21117 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.521 1_109 - 399 CbiA PF01656.18 195 1.2e-20 66.8 0.0 1 1 1.8e-22 2.2e-20 66.0 0.0 1 144 111 294 111 322 0.75 # 88822 # 90018 # 1 # ID=1_109;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.456 1_97 - 455 KaiC PF06745.8 227 1.4e-06 20.7 0.0 1 1 2.9e-08 3.5e-06 19.4 0.0 4 66 185 253 183 277 0.87 # 74999 # 76363 # -1 # ID=1_97;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.483 1_13 - 279 HI0933_like PF03486.9 409 0.0012 10.4 0.0 1 1 1.5e-05 0.0018 9.9 0.0 60 124 27 90 19 109 0.80 # 11678 # 12514 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.460 1_36 - 288 N6_Mtase PF02384.11 311 1e-10 34.3 0.0 1 1 2.5e-11 2.9e-09 29.5 0.0 93 240 145 282 67 284 0.73 # 33566 # 34429 # 1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.524 1_109 - 399 AAA_31 PF13614.1 157 6.3e-07 22.6 0.0 1 2 0.0009 0.053 6.6 0.0 2 63 110 176 109 222 0.75 # 88822 # 90018 # 1 # ID=1_109;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.456 1_109 - 399 AAA_31 PF13614.1 157 6.3e-07 22.6 0.0 2 2 6e-06 0.00035 13.7 0.0 108 138 235 265 231 277 0.85 # 88822 # 90018 # 1 # ID=1_109;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.456 1_97 - 455 AAA_31 PF13614.1 157 7.3e-05 15.9 0.0 1 1 2.9e-06 0.00017 14.7 0.0 5 43 210 249 208 260 0.89 # 74999 # 76363 # -1 # ID=1_97;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.483 1_97 - 455 AAA_33 PF13671.1 143 0.00023 14.2 0.2 1 3 0.088 10 -0.9 0.0 46 79 134 172 102 181 0.69 # 74999 # 76363 # -1 # ID=1_97;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.483 1_97 - 455 AAA_33 PF13671.1 143 0.00023 14.2 0.2 2 3 3.9e-05 0.0047 10.0 0.0 2 42 209 248 208 327 0.60 # 74999 # 76363 # -1 # ID=1_97;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.483 1_97 - 455 AAA_33 PF13671.1 143 0.00023 14.2 0.2 3 3 0.036 4.2 0.4 0.1 88 123 350 383 331 394 0.72 # 74999 # 76363 # -1 # ID=1_97;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.483 1_97 - 455 DnaB_C PF03796.10 259 1.6e-109 357.8 0.3 1 1 2e-111 2.4e-109 357.3 0.3 1 257 188 445 188 447 0.98 # 74999 # 76363 # -1 # ID=1_97;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.483 1_36 - 288 Methyltransf_26 PF13659.1 117 2.5e-10 33.6 0.0 1 1 9.4e-12 5.6e-10 32.5 0.0 5 116 116 225 72 226 0.83 # 33566 # 34429 # 1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.524 1_101 - 1096 Methyltransf_26 PF13659.1 117 2.2e-05 17.6 0.0 1 1 9e-07 5.3e-05 16.4 0.0 1 83 852 1011 852 1061 0.69 # 79584 # 82871 # -1 # ID=1_101;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.471 1_51 - 495 AAA_30 PF13604.1 196 4.4e-05 16.3 0.0 1 1 3.7e-06 0.00044 13.0 0.0 5 127 37 189 35 194 0.70 # 47245 # 48729 # -1 # ID=1_51;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.479 1_97 - 455 FtsK_SpoIIIE PF01580.13 205 0.00037 13.1 0.2 1 2 8.6e-05 0.01 8.4 0.0 40 66 208 234 184 242 0.82 # 74999 # 76363 # -1 # ID=1_97;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.483 1_97 - 455 FtsK_SpoIIIE PF01580.13 205 0.00037 13.1 0.2 2 2 0.012 1.4 1.4 0.1 71 124 319 366 313 400 0.74 # 74999 # 76363 # -1 # ID=1_97;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.483 1_36 - 288 Eco57I PF07669.6 106 5.3e-06 19.9 0.0 1 1 7.8e-08 9.2e-06 19.2 0.0 3 101 174 271 172 276 0.88 # 33566 # 34429 # 1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.524 1_97 - 455 AAA_19 PF13245.1 76 0.001 12.0 0.0 1 1 2.5e-05 0.0029 10.5 0.0 10 48 206 241 199 264 0.82 # 74999 # 76363 # -1 # ID=1_97;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.483 1_37 - 1315 ResIII PF04851.10 184 2.1e-05 17.6 0.0 1 2 2.8e-05 0.0033 10.4 0.0 5 75 549 616 513 636 0.76 # 34422 # 38366 # 1 # ID=1_37;partial=00;start_type=GTG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.529 1_37 - 1315 ResIII PF04851.10 184 2.1e-05 17.6 0.0 2 2 0.0025 0.29 4.0 0.0 137 182 746 823 689 825 0.67 # 34422 # 38366 # 1 # ID=1_37;partial=00;start_type=GTG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.529 1_45 - 132 Methyltransf_21 PF05050.7 167 0.0004 13.5 0.0 1 1 3.4e-06 0.0004 13.5 0.0 112 161 62 115 4 125 0.72 # 43125 # 43520 # -1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.407 1_22 - 640 Kinesin-relat_1 PF12711.2 86 0.0022 11.5 4.6 1 2 0.004 0.48 4.1 0.5 8 42 196 230 191 236 0.81 # 19198 # 21117 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.521 1_22 - 640 Kinesin-relat_1 PF12711.2 86 0.0022 11.5 4.6 2 2 0.00024 0.029 8.0 0.3 7 37 251 281 246 284 0.90 # 19198 # 21117 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.521 1_101 - 1096 MethyltransfD12 PF02086.10 260 3.6e-56 183.6 0.0 1 1 4.8e-58 5.6e-56 182.9 0.0 1 245 834 1063 834 1076 0.94 # 79584 # 82871 # -1 # ID=1_101;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.471 1_28 - 226 EFP PF01132.15 55 0.00057 12.7 0.0 1 1 1e-05 0.0012 11.7 0.0 23 53 133 163 133 164 0.90 # 26685 # 27362 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.459 1_29 - 163 tRNA_anti-codon PF01336.20 75 0.00071 12.6 0.0 1 1 9.8e-06 0.0012 11.9 0.0 31 61 58 92 53 113 0.81 # 27560 # 28048 # -1 # ID=1_29;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.491 1_97 - 455 AAA_25 PF13481.1 194 9.4e-15 47.6 0.1 1 1 1.5e-16 1.8e-14 46.7 0.1 14 190 188 368 174 372 0.82 # 74999 # 76363 # -1 # ID=1_97;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.483 1_37 - 1315 SNF2_N PF00176.18 299 6.7e-18 57.6 0.0 1 1 1.5e-19 1.8e-17 56.1 0.0 27 293 564 977 551 983 0.85 # 34422 # 38366 # 1 # ID=1_37;partial=00;start_type=GTG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.529 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/b3d01b9f-4b6a-4347-853d-d8f7bbae3691 # Target file: checkm_output/bins/pm540/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm540/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/b3d01b9f-4b6a-4347-853d-d8f7bbae3691 checkm_output/bins/pm540/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 17:07:09 2020 # [ok]