# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 2_19 - 396 ABC_ATPase PF09818.4 448 0.00033 12.6 0.0 1 1 4e-06 0.00054 11.9 0.0 244 274 165 195 159 206 0.93 # 10312 # 11499 # 1 # ID=2_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.567 1_1 - 193 DUF1776 PF08643.5 299 5.7e-05 15.7 0.0 1 1 5.8e-07 7.9e-05 15.2 0.0 107 196 42 125 36 129 0.85 # 277 # 855 # 1 # ID=1_1;partial=00;start_type=TTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.522 1_58 - 189 SRP_SPB PF02978.14 104 0.0019 11.8 0.0 1 2 0.00061 0.082 6.6 0.0 73 99 16 42 1 45 0.81 # 55431 # 55997 # 1 # ID=1_58;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.545 1_58 - 189 SRP_SPB PF02978.14 104 0.0019 11.8 0.0 2 2 0.0066 0.9 3.2 0.0 76 101 112 137 97 140 0.89 # 55431 # 55997 # 1 # ID=1_58;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.545 1_35 - 261 IstB_IS21 PF01695.12 178 1.9e-72 235.7 0.1 1 2 0.099 6.7 -0.6 0.0 64 97 26 58 25 62 0.64 # 34791 # 35573 # 1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=3-4bp;gc_cont=0.557 1_35 - 261 IstB_IS21 PF01695.12 178 1.9e-72 235.7 0.1 2 2 6e-74 4.1e-72 234.6 0.0 1 178 57 236 57 236 0.98 # 34791 # 35573 # 1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=3-4bp;gc_cont=0.557 1_70 - 252 IstB_IS21 PF01695.12 178 3.3e-55 179.6 0.0 1 1 6.1e-57 4.2e-55 179.2 0.0 3 176 56 230 54 232 0.98 # 63778 # 64533 # 1 # ID=1_70;partial=00;start_type=GTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.571 1_49 - 209 MipZ PF09140.6 261 2.3e-21 69.3 0.5 1 2 1.2e-12 1.6e-10 33.8 0.0 2 53 2 52 1 60 0.89 # 47974 # 48600 # -1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.448 1_49 - 209 MipZ PF09140.6 261 2.3e-21 69.3 0.5 2 2 1.6e-12 2.2e-10 33.4 0.0 87 140 65 118 58 128 0.92 # 47974 # 48600 # -1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.448 1_49 - 209 YhjQ PF06564.7 244 3.2e-05 16.7 0.3 1 2 1.8e-06 0.00024 13.8 0.3 4 38 3 37 1 50 0.89 # 47974 # 48600 # -1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.448 1_49 - 209 YhjQ PF06564.7 244 3.2e-05 16.7 0.3 2 2 0.029 4 0.0 0.0 108 144 69 103 44 113 0.78 # 47974 # 48600 # -1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.448 1_88 - 731 DUF87 PF01935.12 229 0.00043 13.4 0.2 1 1 9.9e-06 0.0013 11.8 0.0 13 38 127 151 120 159 0.85 # 74688 # 76880 # -1 # ID=1_88;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.546 1_35 - 261 AAA_22 PF13401.1 131 3.2e-06 20.7 0.2 1 2 8.2e-05 0.0028 11.2 0.0 5 22 104 121 100 138 0.83 # 34791 # 35573 # 1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=3-4bp;gc_cont=0.557 1_35 - 261 AAA_22 PF13401.1 131 3.2e-06 20.7 0.2 2 2 0.0022 0.075 6.5 0.0 88 103 156 182 127 204 0.67 # 34791 # 35573 # 1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=3-4bp;gc_cont=0.557 2_19 - 396 AAA_22 PF13401.1 131 4.3e-06 20.2 0.0 1 1 2.5e-07 8.5e-06 19.3 0.0 3 28 164 189 159 296 0.60 # 10312 # 11499 # 1 # ID=2_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.567 1_70 - 252 AAA_22 PF13401.1 131 0.00011 15.8 0.8 1 2 0.00043 0.015 8.8 0.0 7 25 104 122 98 127 0.86 # 63778 # 64533 # 1 # ID=1_70;partial=00;start_type=GTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.571 1_70 - 252 AAA_22 PF13401.1 131 0.00011 15.8 0.8 2 2 0.0057 0.19 5.2 0.2 75 113 149 193 127 206 0.62 # 63778 # 64533 # 1 # ID=1_70;partial=00;start_type=GTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.571 2_30 - 1016 AAA_22 PF13401.1 131 0.00049 13.6 0.0 1 1 0.00014 0.0047 10.4 0.0 8 27 497 516 490 566 0.87 # 21028 # 24075 # 1 # ID=2_30;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.552 2_19 - 396 ATP_bind_1 PF03029.12 238 0.0014 11.5 0.0 1 1 2e-05 0.0028 10.5 0.0 1 22 170 191 170 198 0.91 # 10312 # 11499 # 1 # ID=2_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.567 3_2 - 478 DNA_methylase PF00145.12 335 3e-79 259.8 0.0 1 1 4.4e-81 6e-79 258.8 0.0 1 331 96 457 96 460 0.86 # 393 # 1826 # 1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=3-4bp;gc_cont=0.482 1_49 - 209 SRP54 PF00448.17 196 3.4e-07 23.2 0.1 1 1 1.5e-08 2e-06 20.7 0.1 4 98 2 91 1 134 0.80 # 47974 # 48600 # -1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.448 1_31 - 576 AAA_15 PF13175.1 415 7.9e-12 38.2 0.0 1 2 1.2e-07 1.6e-05 17.4 0.0 1 45 4 47 4 93 0.87 # 31015 # 32742 # 1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.494 1_31 - 576 AAA_15 PF13175.1 415 7.9e-12 38.2 0.0 2 2 4.2e-08 5.7e-06 18.9 0.0 318 414 232 320 176 321 0.80 # 31015 # 32742 # 1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.494 1_49 - 209 AAA_17 PF13207.1 121 3e-05 18.2 0.0 1 1 8.5e-07 5.8e-05 17.3 0.0 9 77 11 84 9 205 0.76 # 47974 # 48600 # -1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.448 1_70 - 252 AAA_17 PF13207.1 121 0.00021 15.4 0.1 1 1 8.8e-06 0.0006 14.0 0.0 2 78 104 175 103 231 0.63 # 63778 # 64533 # 1 # ID=1_70;partial=00;start_type=GTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.571 1_31 - 576 AAA_21 PF13304.1 303 1.8e-22 73.9 0.0 1 1 5.8e-24 2.6e-22 73.4 0.0 1 302 26 321 26 322 0.91 # 31015 # 32742 # 1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.494 1_41 - 935 AAA_21 PF13304.1 303 1.4e-06 21.7 0.6 1 1 8.9e-08 4e-06 20.3 0.1 219 302 734 858 608 859 0.65 # 39249 # 42053 # 1 # ID=1_41;partial=00;start_type=GTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.503 2_19 - 396 AAA_21 PF13304.1 303 0.00065 13.0 0.0 1 1 2.2e-05 0.00098 12.4 0.0 3 24 169 190 167 219 0.75 # 10312 # 11499 # 1 # ID=2_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.567 2_19 - 396 Miro PF08477.8 119 0.00077 13.3 0.0 1 1 1.3e-05 0.0018 12.2 0.0 4 35 170 200 169 256 0.76 # 10312 # 11499 # 1 # ID=2_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.567 1_49 - 209 MobB PF03205.9 140 8e-05 15.7 0.1 1 1 3.2e-06 0.00022 14.3 0.0 10 42 11 41 1 46 0.79 # 47974 # 48600 # -1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.448 2_19 - 396 MobB PF03205.9 140 0.001 12.2 0.0 1 1 2.6e-05 0.0018 11.3 0.0 4 25 169 190 167 196 0.89 # 10312 # 11499 # 1 # ID=2_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.567 1_49 - 209 ArsA_ATPase PF02374.10 305 4.2e-08 25.8 0.4 1 2 1.2e-09 1.6e-07 24.0 0.1 3 48 3 48 1 69 0.85 # 47974 # 48600 # -1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.448 1_49 - 209 ArsA_ATPase PF02374.10 305 4.2e-08 25.8 0.4 2 2 0.053 7.3 -1.2 0.0 121 135 69 85 47 86 0.75 # 47974 # 48600 # -1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.448 1_35 - 261 PhoH PF02562.11 205 2.2e-08 26.9 0.4 1 2 0.005 0.68 2.4 0.1 47 112 5 69 1 78 0.79 # 34791 # 35573 # 1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=3-4bp;gc_cont=0.557 1_35 - 261 PhoH PF02562.11 205 2.2e-08 26.9 0.4 2 2 4.6e-09 6.3e-07 22.1 0.0 11 48 95 132 85 146 0.81 # 34791 # 35573 # 1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=3-4bp;gc_cont=0.557 1_70 - 252 AFG1_ATPase PF03969.11 362 1.8e-05 17.0 0.0 1 1 1.6e-07 2.1e-05 16.8 0.0 35 168 74 204 47 248 0.84 # 63778 # 64533 # 1 # ID=1_70;partial=00;start_type=GTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.571 2_19 - 396 T2SE PF00437.15 272 3.5e-35 114.5 0.0 1 1 3.4e-37 4.6e-35 114.1 0.0 9 270 35 315 28 317 0.86 # 10312 # 11499 # 1 # ID=2_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.567 2_32 - 194 TIGR00810 TIGR00810 73 0.0078 9.4 9.9 1 2 3.9e-05 0.0054 9.9 0.8 49 70 96 117 95 120 0.87 # 25279 # 25860 # 1 # ID=2_32;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.582 2_32 - 194 TIGR00810 TIGR00810 73 0.0078 9.4 9.9 2 2 0.0034 0.46 3.7 2.6 48 71 124 147 122 149 0.85 # 25279 # 25860 # 1 # ID=2_32;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.582 1_31 - 576 SMC_N PF02463.14 220 3.2e-12 39.4 0.0 1 2 2.6e-11 1.8e-09 30.5 0.0 2 55 4 55 3 64 0.89 # 31015 # 32742 # 1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.494 1_31 - 576 SMC_N PF02463.14 220 3.2e-12 39.4 0.0 2 2 0.00049 0.033 6.7 0.0 161 205 278 324 256 336 0.84 # 31015 # 32742 # 1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.494 1_41 - 935 SMC_N PF02463.14 220 1.2e-08 27.8 0.6 1 2 0.0029 0.19 4.2 0.0 20 42 324 346 318 364 0.85 # 39249 # 42053 # 1 # ID=1_41;partial=00;start_type=GTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.503 1_41 - 935 SMC_N PF02463.14 220 1.2e-08 27.8 0.6 2 2 1.2e-08 8.2e-07 21.8 0.2 74 215 441 871 409 876 0.84 # 39249 # 42053 # 1 # ID=1_41;partial=00;start_type=GTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.503 1_49 - 209 VirC1 PF07015.6 231 3.7e-09 29.3 0.0 1 1 5.9e-11 8.1e-09 28.2 0.0 3 172 2 164 1 206 0.75 # 47974 # 48600 # -1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.448 1_49 - 209 Fer4_NifH PF00142.13 273 0.0001 14.9 0.0 1 1 2.3e-06 0.00031 13.3 0.0 8 38 9 39 2 46 0.89 # 47974 # 48600 # -1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.448 1_70 - 252 Arch_ATPase PF01637.13 234 0.00017 14.7 0.2 1 2 0.00039 0.026 7.5 0.0 22 59 103 140 89 150 0.82 # 63778 # 64533 # 1 # ID=1_70;partial=00;start_type=GTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.571 1_70 - 252 Arch_ATPase PF01637.13 234 0.00017 14.7 0.2 2 2 0.0011 0.072 6.1 0.1 99 153 146 193 137 203 0.71 # 63778 # 64533 # 1 # ID=1_70;partial=00;start_type=GTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.571 1_35 - 261 Arch_ATPase PF01637.13 234 0.0012 11.9 0.1 1 1 5e-05 0.0034 10.4 0.1 8 38 91 121 88 202 0.81 # 34791 # 35573 # 1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=3-4bp;gc_cont=0.557 1_88 - 731 tRNA_U5-meth_tr PF05958.6 352 0.00088 11.3 0.3 1 1 1e-05 0.0014 10.6 0.3 108 171 237 300 208 303 0.84 # 74688 # 76880 # -1 # ID=1_88;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.546 1_70 - 252 AAA_16 PF13191.1 185 1.8e-05 18.1 0.8 1 2 2.3e-05 0.001 12.4 0.1 24 46 101 123 83 135 0.85 # 63778 # 64533 # 1 # ID=1_70;partial=00;start_type=GTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.571 1_70 - 252 AAA_16 PF13191.1 185 1.8e-05 18.1 0.8 2 2 0.0092 0.42 3.9 0.1 132 165 142 177 133 199 0.56 # 63778 # 64533 # 1 # ID=1_70;partial=00;start_type=GTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.571 2_19 - 396 AAA_16 PF13191.1 185 7.9e-05 16.0 0.0 1 1 3.9e-06 0.00018 14.9 0.0 27 81 168 240 156 322 0.69 # 10312 # 11499 # 1 # ID=2_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.567 1_35 - 261 AAA_16 PF13191.1 185 0.00011 15.6 0.9 1 1 7e-06 0.00032 14.1 0.1 9 41 91 120 88 163 0.79 # 34791 # 35573 # 1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=3-4bp;gc_cont=0.557 1_31 - 576 AAA_23 PF13476.1 202 4e-13 43.5 0.0 1 1 1.2e-14 5.6e-13 43.0 0.0 2 104 7 99 6 222 0.76 # 31015 # 32742 # 1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.494 2_19 - 396 AAA_23 PF13476.1 202 6.3e-07 23.2 0.0 1 1 2.5e-08 1.1e-06 22.4 0.0 18 40 164 186 149 226 0.86 # 10312 # 11499 # 1 # ID=2_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.567 1_41 - 935 AAA_23 PF13476.1 202 2.6e-06 21.2 3.6 1 1 5.6e-08 2.6e-06 21.2 3.6 10 195 319 578 315 584 0.69 # 39249 # 42053 # 1 # ID=1_41;partial=00;start_type=GTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.503 1_1 - 193 adh_short PF00106.20 167 4.4e-21 68.8 0.0 1 1 4e-23 5.4e-21 68.5 0.0 57 166 3 115 1 116 0.97 # 277 # 855 # 1 # ID=1_1;partial=00;start_type=TTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.522 1_49 - 209 CbiA PF01656.18 195 3.3e-22 72.2 0.0 1 1 4.7e-24 6.4e-22 71.2 0.0 1 154 3 137 3 178 0.78 # 47974 # 48600 # -1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.448 1_35 - 261 AAA_14 PF13173.1 128 9.1e-07 22.2 0.0 1 1 1.2e-08 1.7e-06 21.3 0.0 2 96 103 204 102 222 0.67 # 34791 # 35573 # 1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=3-4bp;gc_cont=0.557 1_31 - 576 AAA_29 PF13555.1 62 1e-07 24.8 0.0 1 1 6.1e-09 2.1e-07 23.8 0.0 23 55 25 56 4 60 0.73 # 31015 # 32742 # 1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.494 2_19 - 396 AAA_29 PF13555.1 62 2e-06 20.6 0.0 1 1 1.5e-07 5.1e-06 19.3 0.0 23 43 166 185 158 193 0.86 # 10312 # 11499 # 1 # ID=2_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.567 1_70 - 252 AAA_29 PF13555.1 62 3.5e-05 16.7 0.0 1 1 2.1e-06 7.3e-05 15.6 0.0 18 47 96 125 82 139 0.76 # 63778 # 64533 # 1 # ID=1_70;partial=00;start_type=GTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.571 1_35 - 261 AAA_29 PF13555.1 62 0.001 11.9 0.0 1 1 5.8e-05 0.002 11.0 0.0 19 59 99 140 90 142 0.72 # 34791 # 35573 # 1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=3-4bp;gc_cont=0.557 1_35 - 261 AAA PF00004.24 132 2e-07 24.6 0.0 1 1 5.3e-09 3.6e-07 23.8 0.0 1 74 106 181 106 215 0.77 # 34791 # 35573 # 1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=3-4bp;gc_cont=0.557 1_70 - 252 AAA PF00004.24 132 4.6e-05 17.0 0.0 1 1 1.3e-06 8.8e-05 16.1 0.0 1 74 104 178 104 208 0.78 # 63778 # 64533 # 1 # ID=1_70;partial=00;start_type=GTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.571 1_70 - 252 Bac_DnaA PF00308.13 219 1.6e-09 31.1 0.0 1 1 3.3e-11 2.3e-09 30.5 0.0 36 138 103 202 81 210 0.89 # 63778 # 64533 # 1 # ID=1_70;partial=00;start_type=GTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.571 1_35 - 261 Bac_DnaA PF00308.13 219 1.7e-09 30.9 0.0 1 1 3.8e-11 2.6e-09 30.3 0.0 36 136 105 203 76 208 0.85 # 34791 # 35573 # 1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=3-4bp;gc_cont=0.557 1_35 - 261 Sigma54_activat PF00158.21 168 0.00011 15.1 0.1 1 1 4.8e-06 0.00066 12.5 0.1 18 68 99 149 83 200 0.69 # 34791 # 35573 # 1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=3-4bp;gc_cont=0.557 2_30 - 1016 MMR_HSR1 PF01926.18 116 0.0007 12.9 0.0 1 1 1.3e-05 0.0018 11.6 0.0 3 27 497 518 495 535 0.83 # 21028 # 24075 # 1 # ID=2_30;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.552 1_35 - 261 DUF258 PF03193.11 161 1.3e-05 17.8 0.0 1 1 1.4e-07 2e-05 17.2 0.0 22 80 90 160 71 195 0.71 # 34791 # 35573 # 1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=3-4bp;gc_cont=0.557 1_49 - 209 AAA_31 PF13614.1 157 5.8e-06 19.7 0.0 1 2 2.5e-07 3.4e-05 17.1 0.0 2 42 2 42 1 55 0.88 # 47974 # 48600 # -1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.448 1_49 - 209 AAA_31 PF13614.1 157 5.8e-06 19.7 0.0 2 2 0.055 7.4 -0.2 0.0 109 127 68 86 62 113 0.68 # 47974 # 48600 # -1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.448 1_35 - 261 NTPase_1 PF03266.10 168 0.00021 14.4 0.2 1 2 0.002 0.27 4.2 0.1 2 30 106 134 105 139 0.77 # 34791 # 35573 # 1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=3-4bp;gc_cont=0.557 1_35 - 261 NTPase_1 PF03266.10 168 0.00021 14.4 0.2 2 2 0.00016 0.021 7.8 0.0 88 112 158 182 144 204 0.73 # 34791 # 35573 # 1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=3-4bp;gc_cont=0.557 2_19 - 396 FtsK_SpoIIIE PF01580.13 205 4.4e-05 16.3 0.0 1 1 1.3e-06 9.1e-05 15.3 0.0 41 66 168 192 145 197 0.83 # 10312 # 11499 # 1 # ID=2_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.567 2_30 - 1016 FtsK_SpoIIIE PF01580.13 205 0.0013 11.6 0.0 1 1 3.6e-05 0.0025 10.6 0.0 18 59 474 514 456 530 0.67 # 21028 # 24075 # 1 # ID=2_30;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.552 1_31 - 576 DUF2813 PF11398.3 373 1.1e-05 17.9 0.0 1 1 1.6e-07 2.1e-05 17.0 0.0 3 65 4 66 2 100 0.87 # 31015 # 32742 # 1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.494 1_3 - 129 AAA_35 PF14516.1 331 0.0002 13.4 0.7 1 2 2.7e-06 0.00037 12.5 0.5 186 226 70 112 61 118 0.75 # 1685 # 2071 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.506 1_3 - 129 AAA_35 PF14516.1 331 0.0002 13.4 0.7 2 2 0.0024 0.33 2.8 0.1 180 214 93 127 90 128 0.90 # 1685 # 2071 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.506 2_19 - 396 ABC_tran PF00005.22 137 4.2e-05 17.2 0.0 1 1 2.4e-06 8.2e-05 16.3 0.0 16 34 170 188 162 221 0.87 # 10312 # 11499 # 1 # ID=2_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.567 1_35 - 261 ABC_tran PF00005.22 137 0.00016 15.3 0.3 1 1 5.4e-05 0.0018 11.9 0.0 8 30 100 122 94 131 0.86 # 34791 # 35573 # 1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=3-4bp;gc_cont=0.557 1_70 - 252 ABC_tran PF00005.22 137 0.00027 14.6 0.0 1 1 1.7e-05 0.00057 13.5 0.0 8 32 98 122 95 127 0.91 # 63778 # 64533 # 1 # ID=1_70;partial=00;start_type=GTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.571 2_30 - 1016 ABC_tran PF00005.22 137 0.0008 13.1 0.0 1 1 8.1e-05 0.0028 11.3 0.0 13 33 495 515 487 525 0.85 # 21028 # 24075 # 1 # ID=2_30;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.552 1_35 - 261 RuvB_N PF05496.7 234 0.00034 13.0 0.0 1 1 1.1e-05 0.00074 11.9 0.0 50 119 103 183 90 191 0.68 # 34791 # 35573 # 1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=3-4bp;gc_cont=0.557 1_70 - 252 RuvB_N PF05496.7 234 0.00057 12.3 0.0 1 1 1.3e-05 0.00087 11.7 0.0 50 115 101 176 88 188 0.70 # 63778 # 64533 # 1 # ID=1_70;partial=00;start_type=GTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.571 1_35 - 261 AAA_19 PF13245.1 76 0.00056 13.0 0.0 1 1 3e-05 0.0014 11.8 0.0 10 37 104 130 97 155 0.79 # 34791 # 35573 # 1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=3-4bp;gc_cont=0.557 1_49 - 209 AAA_19 PF13245.1 76 0.00077 12.6 0.1 1 2 0.00029 0.013 8.6 0.0 20 48 11 35 9 44 0.84 # 47974 # 48600 # -1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.448 1_49 - 209 AAA_19 PF13245.1 76 0.00077 12.6 0.1 2 2 0.067 3 1.1 0.0 42 62 135 155 118 180 0.75 # 47974 # 48600 # -1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.448 2_19 - 396 AAA_19 PF13245.1 76 0.00081 12.5 0.3 1 1 5.1e-05 0.0023 11.1 0.3 10 37 165 192 156 260 0.79 # 10312 # 11499 # 1 # ID=2_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.567 1_63 - 327 Methyltransf_2 PF00891.13 242 0.00014 14.4 0.0 1 1 2.2e-06 0.00029 13.4 0.0 69 112 241 284 222 297 0.86 # 58469 # 59449 # 1 # ID=1_63;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.499 2_30 - 1016 AAA_10 PF12846.2 304 1.6e-35 116.3 0.0 1 1 9.9e-37 2.3e-35 115.8 0.0 5 301 497 894 493 897 0.93 # 21028 # 24075 # 1 # ID=2_30;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.552 1_88 - 731 AAA_10 PF12846.2 304 8.4e-11 35.1 0.6 1 1 1.2e-11 2.7e-10 33.4 0.6 60 294 217 508 136 518 0.67 # 74688 # 76880 # -1 # ID=1_88;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.546 1_35 - 261 AAA_10 PF12846.2 304 8.2e-06 18.7 0.6 1 1 5.9e-06 0.00013 14.7 0.0 1 33 103 135 103 172 0.90 # 34791 # 35573 # 1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=3-4bp;gc_cont=0.557 1_70 - 252 AAA_10 PF12846.2 304 3.4e-05 16.7 0.0 1 1 2e-06 4.5e-05 16.3 0.0 3 32 103 132 101 185 0.80 # 63778 # 64533 # 1 # ID=1_70;partial=00;start_type=GTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.571 2_19 - 396 AAA_10 PF12846.2 304 6.3e-05 15.8 0.0 1 1 6.6e-06 0.00015 14.6 0.0 3 28 167 192 165 207 0.86 # 10312 # 11499 # 1 # ID=2_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.567 1_49 - 209 AAA_10 PF12846.2 304 0.00021 14.1 0.0 1 1 1.5e-05 0.00034 13.4 0.0 11 39 11 39 3 67 0.90 # 47974 # 48600 # -1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.448 1_29 - 190 NodS PF05401.6 201 0.0007 12.3 0.0 1 2 0.054 7.4 -0.8 0.0 42 154 33 58 19 66 0.62 # 29752 # 30321 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.674 1_29 - 190 NodS PF05401.6 201 0.0007 12.3 0.0 2 2 1.8e-05 0.0025 10.5 0.0 26 86 99 159 85 172 0.82 # 29752 # 30321 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.674 1_1 - 193 adh_short_C2 PF13561.1 241 4.8e-22 72.2 0.0 1 1 3.9e-24 5.2e-22 72.1 0.0 49 239 3 188 1 190 0.95 # 277 # 855 # 1 # ID=1_1;partial=00;start_type=TTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.522 1_35 - 261 ResIII PF04851.10 184 0.00055 13.1 0.0 1 2 4.2e-05 0.0058 9.8 0.0 7 51 89 129 73 141 0.77 # 34791 # 35573 # 1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=3-4bp;gc_cont=0.557 1_35 - 261 ResIII PF04851.10 184 0.00055 13.1 0.0 2 2 0.017 2.3 1.3 0.0 113 163 133 182 129 205 0.67 # 34791 # 35573 # 1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=3-4bp;gc_cont=0.557 2_30 - 1016 DUF2075 PF09848.4 352 0.0016 10.7 0.0 1 1 2.1e-05 0.0029 9.9 0.0 3 32 495 524 493 558 0.74 # 21028 # 24075 # 1 # ID=2_30;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.552 1_70 - 252 DUF815 PF05673.8 250 1.3e-06 20.8 0.0 1 1 1.4e-08 1.9e-06 20.3 0.0 44 124 94 179 53 202 0.68 # 63778 # 64533 # 1 # ID=1_70;partial=00;start_type=GTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.571 1_73 - 287 Methyltransf_27 PF13708.1 194 2.8e-69 225.8 0.0 1 1 2.7e-71 3.7e-69 225.5 0.0 2 194 89 282 88 282 0.98 # 65298 # 66158 # 1 # ID=1_73;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.499 1_88 - 731 TrwB_AAD_bind PF10412.4 386 6.3e-11 34.8 1.1 1 3 3.2e-05 0.0044 9.0 0.0 11 37 132 158 126 175 0.81 # 74688 # 76880 # -1 # ID=1_88;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.546 1_88 - 731 TrwB_AAD_bind PF10412.4 386 6.3e-11 34.8 1.1 2 3 0.0012 0.16 3.8 0.2 90 170 235 307 219 323 0.67 # 74688 # 76880 # -1 # ID=1_88;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.546 1_88 - 731 TrwB_AAD_bind PF10412.4 386 6.3e-11 34.8 1.1 3 3 2.8e-08 3.9e-06 19.0 0.0 259 338 452 532 425 571 0.73 # 74688 # 76880 # -1 # ID=1_88;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.546 1_70 - 252 RNA_helicase PF00910.17 107 0.00014 15.4 0.0 1 1 1.3e-05 0.00086 12.9 0.0 1 74 104 188 104 191 0.73 # 63778 # 64533 # 1 # ID=1_70;partial=00;start_type=GTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.571 2_30 - 1016 RNA_helicase PF00910.17 107 0.00097 12.7 0.0 1 1 6.6e-05 0.0045 10.6 0.0 2 25 497 520 497 537 0.85 # 21028 # 24075 # 1 # ID=2_30;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.552 1_58 - 189 Terminase_GpA PF05876.7 557 0.00026 12.7 0.3 1 2 0.069 9.4 -2.3 0.3 230 243 50 63 31 83 0.65 # 55431 # 55997 # 1 # ID=1_58;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.545 1_58 - 189 Terminase_GpA PF05876.7 557 0.00026 12.7 0.3 2 2 1.9e-06 0.00026 12.7 0.3 165 241 107 174 99 180 0.87 # 55431 # 55997 # 1 # ID=1_58;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.545 1_35 - 261 AAA_24 PF13479.1 213 0.0013 11.6 0.0 1 2 3.5e-05 0.0048 9.8 0.0 3 21 103 121 101 128 0.84 # 34791 # 35573 # 1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=3-4bp;gc_cont=0.557 1_35 - 261 AAA_24 PF13479.1 213 0.0013 11.6 0.0 2 2 0.09 12 -1.3 0.0 12 30 152 172 133 176 0.88 # 34791 # 35573 # 1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=3-4bp;gc_cont=0.557 2_12 - 178 TIGR00922 TIGR00922 172 6.4e-06 19.1 0.0 1 1 8.7e-08 1.2e-05 18.3 0.0 34 96 28 92 4 106 0.75 # 6753 # 7286 # 1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.470 2_30 - 1016 NACHT PF05729.7 166 0.00011 15.3 0.0 1 2 8.5e-05 0.0038 10.2 0.0 3 38 496 527 494 562 0.79 # 21028 # 24075 # 1 # ID=2_30;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.552 2_30 - 1016 NACHT PF05729.7 166 0.00011 15.3 0.0 2 2 0.026 1.2 2.1 0.0 33 62 830 860 815 878 0.83 # 21028 # 24075 # 1 # ID=2_30;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.552 1_70 - 252 NACHT PF05729.7 166 0.00012 15.1 0.3 1 2 0.00023 0.01 8.8 0.1 3 23 104 124 102 135 0.90 # 63778 # 64533 # 1 # ID=1_70;partial=00;start_type=GTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.571 1_70 - 252 NACHT PF05729.7 166 0.00012 15.1 0.3 2 2 0.0055 0.25 4.3 0.0 72 126 153 201 130 219 0.75 # 63778 # 64533 # 1 # ID=1_70;partial=00;start_type=GTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.571 2_19 - 396 NACHT PF05729.7 166 0.00027 14.0 0.0 1 1 1.6e-05 0.00071 12.6 0.0 4 30 169 195 167 200 0.87 # 10312 # 11499 # 1 # ID=2_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.567 2_19 - 396 AAA_25 PF13481.1 194 9.1e-06 18.5 0.0 1 1 4.4e-07 1.5e-05 17.8 0.0 24 58 156 190 128 267 0.85 # 10312 # 11499 # 1 # ID=2_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.567 1_70 - 252 AAA_25 PF13481.1 194 1.3e-05 18.0 0.2 1 1 1.1e-06 3.8e-05 16.5 0.1 25 57 91 125 70 149 0.83 # 63778 # 64533 # 1 # ID=1_70;partial=00;start_type=GTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.571 1_35 - 261 AAA_25 PF13481.1 194 5.5e-05 16.0 0.0 1 1 2.5e-06 8.6e-05 15.3 0.0 28 58 98 128 72 174 0.81 # 34791 # 35573 # 1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=3-4bp;gc_cont=0.557 1_49 - 209 AAA_25 PF13481.1 194 0.00018 14.3 0.1 1 1 1.2e-05 0.00042 13.1 0.0 42 87 10 44 3 90 0.78 # 47974 # 48600 # -1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.448 1_35 - 261 AAA_28 PF13521.1 163 0.0023 11.3 1.3 1 2 0.069 9.4 -0.5 0.1 85 110 37 64 5 84 0.69 # 34791 # 35573 # 1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=3-4bp;gc_cont=0.557 1_35 - 261 AAA_28 PF13521.1 163 0.0023 11.3 1.3 2 2 5e-05 0.0068 9.7 0.1 1 27 105 135 105 170 0.71 # 34791 # 35573 # 1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=3-4bp;gc_cont=0.557 1_35 - 261 AAA_5 PF07728.9 139 5.1e-05 16.4 0.2 1 2 3.9e-06 0.00053 13.1 0.1 1 74 105 174 105 182 0.73 # 34791 # 35573 # 1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=3-4bp;gc_cont=0.557 1_35 - 261 AAA_5 PF07728.9 139 5.1e-05 16.4 0.2 2 2 0.063 8.5 -0.6 0.0 87 123 228 259 219 260 0.56 # 34791 # 35573 # 1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=3-4bp;gc_cont=0.557 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/f9c71611-0e60-450e-b6d0-83b6d6a9ff00 # Target file: checkm_output/bins/pm536/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm536/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/f9c71611-0e60-450e-b6d0-83b6d6a9ff00 checkm_output/bins/pm536/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 17:07:03 2020 # [ok]