# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_31 - 72 cobW PF02492.14 178 0.00023 14.2 0.0 1 1 3.8e-06 0.00031 13.8 0.0 5 25 42 66 39 71 0.77 # 21851 # 22066 # 1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.394 3_5 - 181 cobW PF02492.14 178 0.0013 11.7 0.0 1 1 2.6e-05 0.0021 11.1 0.0 2 22 2 22 1 30 0.79 # 2203 # 2745 # -1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.567 1_10 - 402 MipZ PF09140.6 261 9.1e-06 18.4 0.0 1 2 0.0025 0.4 3.2 0.0 3 50 111 163 109 201 0.73 # 6928 # 8133 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.470 1_10 - 402 MipZ PF09140.6 261 9.1e-06 18.4 0.0 2 2 2.8e-06 0.00045 12.9 0.0 87 136 233 282 220 305 0.87 # 6928 # 8133 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.470 2_6 - 565 3HCDH_N PF02737.13 180 0.0051 10.0 6.4 1 2 0.0047 0.76 2.9 2.4 1 30 99 128 99 134 0.93 # 2771 # 4465 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 2_6 - 565 3HCDH_N PF02737.13 180 0.0051 10.0 6.4 2 2 9e-05 0.014 8.6 0.1 2 39 272 309 271 348 0.73 # 2771 # 4465 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 2_6 - 565 GIDA PF01134.17 392 4.1e-08 26.0 6.6 1 3 3.5e-10 5.5e-08 25.5 3.3 2 187 100 279 99 302 0.72 # 2771 # 4465 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 2_6 - 565 GIDA PF01134.17 392 4.1e-08 26.0 6.6 2 3 0.038 6.1 -0.9 0.0 3 31 273 301 271 315 0.84 # 2771 # 4465 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 2_6 - 565 GIDA PF01134.17 392 4.1e-08 26.0 6.6 3 3 0.018 2.9 0.1 0.1 349 385 393 429 387 433 0.77 # 2771 # 4465 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 2_53 - 680 UvrD_C_2 PF13538.1 104 4.2e-11 36.5 0.0 1 1 8.4e-13 1.4e-10 34.9 0.0 40 104 520 607 486 607 0.81 # 34551 # 36590 # 1 # ID=2_53;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.502 2_6 - 565 Pyr_redox_2 PF07992.9 201 1.3e-43 142.7 0.0 1 1 3.2e-45 5.2e-43 140.8 0.0 2 199 100 410 99 412 0.96 # 2771 # 4465 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_78 - 323 DUF87 PF01935.12 229 0.00095 12.6 0.2 1 3 5.2e-05 0.0084 9.5 0.0 26 52 43 69 40 73 0.85 # 56635 # 57603 # -1 # ID=1_78;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 1_78 - 323 DUF87 PF01935.12 229 0.00095 12.6 0.2 2 3 0.083 13 -1.0 0.0 135 194 79 139 68 151 0.68 # 56635 # 57603 # -1 # ID=1_78;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 1_78 - 323 DUF87 PF01935.12 229 0.00095 12.6 0.2 3 3 0.067 11 -0.7 0.0 121 195 198 299 171 308 0.59 # 56635 # 57603 # -1 # ID=1_78;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 1_78 - 323 NB-ARC PF00931.17 287 0.00064 12.2 0.3 1 1 5.9e-06 0.00095 11.6 0.3 8 104 29 126 22 144 0.74 # 56635 # 57603 # -1 # ID=1_78;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 1_78 - 323 AAA_22 PF13401.1 131 7.9e-16 52.0 0.3 1 1 4.5e-17 1.8e-15 50.8 0.3 3 129 39 170 36 172 0.77 # 56635 # 57603 # -1 # ID=1_78;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 2_53 - 680 AAA_22 PF13401.1 131 1.2e-05 19.0 0.1 1 2 0.00028 0.011 9.4 0.0 4 65 17 75 13 100 0.79 # 34551 # 36590 # 1 # ID=2_53;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.502 2_53 - 680 AAA_22 PF13401.1 131 1.2e-05 19.0 0.1 2 2 0.0019 0.077 6.7 0.0 41 108 152 232 117 246 0.67 # 34551 # 36590 # 1 # ID=2_53;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.502 3_5 - 181 AAA_22 PF13401.1 131 2.7e-05 17.9 0.0 1 1 1.3e-06 5.3e-05 17.0 0.0 6 37 2 34 1 177 0.84 # 2203 # 2745 # -1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.567 1_31 - 72 AAA_22 PF13401.1 131 0.0014 12.4 0.0 1 1 6.8e-05 0.0027 11.4 0.0 7 31 40 64 31 69 0.84 # 21851 # 22066 # 1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.394 2_6 - 565 DFP PF04127.10 185 0.0013 12.0 2.4 1 2 0.00039 0.063 6.4 0.4 28 51 105 128 99 156 0.83 # 2771 # 4465 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 2_6 - 565 DFP PF04127.10 185 0.0013 12.0 2.4 2 2 0.0014 0.22 4.7 0.1 32 53 281 302 276 336 0.77 # 2771 # 4465 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_78 - 323 PRK PF00485.13 194 0.00054 13.1 0.0 1 1 7e-06 0.0011 12.1 0.0 1 38 42 81 42 132 0.66 # 56635 # 57603 # -1 # ID=1_78;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 2_34 - 476 DNA_methylase PF00145.12 335 5.2e-76 249.4 0.0 1 1 4.2e-78 6.7e-76 249.0 0.0 1 333 92 455 92 457 0.87 # 20809 # 22236 # 1 # ID=2_34;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.468 2_6 - 565 NAD_binding_7 PF13241.1 103 5.5e-07 23.4 1.2 1 2 5.4e-05 0.0086 9.9 0.2 9 38 99 128 96 184 0.89 # 2771 # 4465 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 2_6 - 565 NAD_binding_7 PF13241.1 103 5.5e-07 23.4 1.2 2 2 1.4e-05 0.0023 11.8 0.1 8 41 270 306 264 380 0.74 # 2771 # 4465 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 3_5 - 181 AAA_17 PF13207.1 121 9.8e-07 23.2 0.1 1 1 2.3e-08 1.9e-06 22.3 0.1 1 77 2 94 2 173 0.54 # 2203 # 2745 # -1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.567 1_78 - 323 AAA_17 PF13207.1 121 0.00024 15.5 0.1 1 1 6.8e-06 0.00054 14.4 0.0 1 40 42 89 42 186 0.63 # 56635 # 57603 # -1 # ID=1_78;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 1_78 - 323 MobB PF03205.9 140 0.00051 13.3 0.1 1 1 1.1e-05 0.0018 11.6 0.0 2 31 42 70 41 86 0.78 # 56635 # 57603 # -1 # ID=1_78;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 1_78 - 323 T2SE PF00437.15 272 4.3e-06 19.3 0.7 1 1 1.3e-07 2.1e-05 17.1 0.7 110 161 22 72 6 137 0.81 # 56635 # 57603 # -1 # ID=1_78;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 3_5 - 181 Cytidylate_kin2 PF13189.1 179 0.00074 13.0 0.0 1 2 6.6e-05 0.011 9.3 0.0 1 23 2 24 2 46 0.78 # 2203 # 2745 # -1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.567 3_5 - 181 Cytidylate_kin2 PF13189.1 179 0.00074 13.0 0.0 2 2 0.015 2.4 1.6 0.0 112 135 99 122 91 136 0.77 # 2203 # 2745 # -1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.567 3_5 - 181 Zeta_toxin PF06414.7 201 7.2e-05 15.5 0.0 1 2 4.7e-06 0.00075 12.2 0.0 19 53 3 35 1 120 0.83 # 2203 # 2745 # -1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.567 3_5 - 181 Zeta_toxin PF06414.7 201 7.2e-05 15.5 0.0 2 2 0.024 3.8 0.1 0.0 45 74 106 133 95 150 0.73 # 2203 # 2745 # -1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.567 2_6 - 565 NAD_binding_8 PF13450.1 68 5.6e-05 16.7 1.2 1 2 3.5e-07 5.6e-05 16.7 1.2 1 35 102 135 102 155 0.90 # 2771 # 4465 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 2_6 - 565 NAD_binding_8 PF13450.1 68 5.6e-05 16.7 1.2 2 2 0.041 6.6 0.5 0.2 1 25 274 298 274 303 0.81 # 2771 # 4465 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 2_6 - 565 F420_oxidored PF03807.12 96 0.011 9.7 4.1 1 2 0.0023 0.37 4.9 1.2 2 31 100 126 99 131 0.87 # 2771 # 4465 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 2_6 - 565 F420_oxidored PF03807.12 96 0.011 9.7 4.1 2 2 0.0075 1.2 3.3 0.1 1 34 271 300 271 323 0.87 # 2771 # 4465 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_78 - 323 Arch_ATPase PF01637.13 234 5.8e-05 16.4 0.2 1 1 8.6e-07 0.00014 15.2 0.2 8 135 30 142 27 164 0.68 # 56635 # 57603 # -1 # ID=1_78;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 1_78 - 323 AAA_16 PF13191.1 185 5.8e-11 36.3 1.2 1 1 9.1e-12 7.2e-10 32.7 0.3 22 179 38 153 24 162 0.76 # 56635 # 57603 # -1 # ID=1_78;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 1_31 - 72 AAA_16 PF13191.1 185 0.00047 13.7 0.1 1 1 6.3e-06 0.0005 13.6 0.1 26 51 39 64 27 71 0.85 # 21851 # 22066 # 1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.394 3_5 - 181 AAA_18 PF13238.1 129 1.1e-10 35.5 0.0 1 1 2.4e-12 1.9e-10 34.7 0.0 1 126 3 134 3 137 0.71 # 2203 # 2745 # -1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.567 1_78 - 323 AAA_18 PF13238.1 129 0.00015 15.7 0.0 1 1 3.3e-06 0.00027 14.8 0.0 1 23 43 90 43 138 0.67 # 56635 # 57603 # -1 # ID=1_78;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 2_37 - 512 AAA_13 PF13166.1 712 0.00071 11.6 0.2 1 1 6.9e-06 0.0011 11.0 0.2 360 440 4 84 2 102 0.90 # 23397 # 24932 # -1 # ID=2_37;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.604 1_10 - 402 CbiA PF01656.18 195 3.6e-18 59.2 0.0 1 1 4.6e-20 7.4e-18 58.2 0.0 1 141 111 291 111 328 0.75 # 6928 # 8133 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.470 1_78 - 323 KaiC PF06745.8 227 0.00031 13.4 0.1 1 1 4.3e-06 0.00069 12.3 0.1 12 43 33 63 27 149 0.80 # 56635 # 57603 # -1 # ID=1_78;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 1_78 - 323 AAA_14 PF13173.1 128 6.6e-06 19.6 0.0 1 1 3.5e-07 2.8e-05 17.6 0.0 2 96 40 164 39 193 0.62 # 56635 # 57603 # -1 # ID=1_78;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 3_5 - 181 AAA_14 PF13173.1 128 0.00095 12.7 0.0 1 1 2.3e-05 0.0018 11.7 0.0 4 27 2 25 1 54 0.79 # 2203 # 2745 # -1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.567 2_6 - 565 HI0933_like PF03486.9 409 3.5e-08 25.8 3.7 1 2 1.2e-06 0.00019 13.5 2.5 2 33 99 130 98 138 0.91 # 2771 # 4465 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 2_6 - 565 HI0933_like PF03486.9 409 3.5e-08 25.8 3.7 2 2 7.2e-06 0.0012 10.9 0.0 82 164 284 366 276 385 0.83 # 2771 # 4465 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 2_6 - 565 FAD_binding_2 PF00890.19 417 6.8e-06 18.6 4.7 1 3 4.3e-08 6.8e-06 18.6 4.7 2 32 100 130 99 137 0.90 # 2771 # 4465 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 2_6 - 565 FAD_binding_2 PF00890.19 417 6.8e-06 18.6 4.7 2 3 0.033 5.3 -0.7 0.2 143 204 311 369 294 389 0.73 # 2771 # 4465 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 2_6 - 565 FAD_binding_2 PF00890.19 417 6.8e-06 18.6 4.7 3 3 0.073 12 -1.9 0.0 376 402 388 408 377 425 0.82 # 2771 # 4465 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_78 - 323 AAA PF00004.24 132 2.4e-06 21.3 0.0 1 1 3.5e-08 5.7e-06 20.2 0.0 3 97 45 152 43 181 0.68 # 56635 # 57603 # -1 # ID=1_78;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 2_53 - 680 UvrD_C PF13361.1 351 2.5e-22 73.3 0.0 1 3 0.1 16 -1.7 0.0 61 100 32 71 21 90 0.80 # 34551 # 36590 # 1 # ID=2_53;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.502 2_53 - 680 UvrD_C PF13361.1 351 2.5e-22 73.3 0.0 2 3 0.0019 0.31 3.9 0.0 74 118 332 377 287 388 0.79 # 34551 # 36590 # 1 # ID=2_53;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.502 2_53 - 680 UvrD_C PF13361.1 351 2.5e-22 73.3 0.0 3 3 2.6e-22 4.1e-20 66.0 0.0 290 347 538 607 517 611 0.91 # 34551 # 36590 # 1 # ID=2_53;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.502 2_6 - 565 Pyr_redox_3 PF13738.1 203 2e-17 57.4 0.1 1 2 4.4e-14 7.1e-12 39.3 0.1 1 201 101 303 101 305 0.75 # 2771 # 4465 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 2_6 - 565 Pyr_redox_3 PF13738.1 203 2e-17 57.4 0.1 2 2 9e-07 0.00014 15.5 0.0 93 147 320 375 309 430 0.76 # 2771 # 4465 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_10 - 402 AAA_31 PF13614.1 157 0.00072 13.1 0.1 1 2 0.071 11 -0.6 0.0 12 61 120 174 110 209 0.55 # 6928 # 8133 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.470 1_10 - 402 AAA_31 PF13614.1 157 0.00072 13.1 0.1 2 2 3.1e-05 0.005 10.3 0.0 108 147 235 273 231 279 0.86 # 6928 # 8133 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.470 3_5 - 181 AAA_33 PF13671.1 143 9.2e-11 35.4 0.0 1 1 1.5e-12 1.2e-10 35.0 0.0 2 127 3 130 2 151 0.75 # 2203 # 2745 # -1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.567 1_78 - 323 AAA_33 PF13671.1 143 0.00026 14.5 0.0 1 1 7.3e-06 0.00059 13.3 0.0 1 45 42 100 42 132 0.60 # 56635 # 57603 # -1 # ID=1_78;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 1_78 - 323 AAA_30 PF13604.1 196 0.00026 14.2 0.3 1 1 9.7e-06 0.00078 12.6 0.3 15 128 38 164 27 170 0.55 # 56635 # 57603 # -1 # ID=1_78;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 2_53 - 680 AAA_30 PF13604.1 196 0.00045 13.4 0.0 1 2 0.00018 0.014 8.5 0.0 7 40 10 39 4 84 0.71 # 34551 # 36590 # 1 # ID=2_53;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.502 2_53 - 680 AAA_30 PF13604.1 196 0.00045 13.4 0.0 2 2 0.013 1 2.4 0.0 97 133 213 248 195 301 0.82 # 34551 # 36590 # 1 # ID=2_53;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.502 1_78 - 323 ABC_tran PF00005.22 137 1.1e-05 19.3 0.1 1 1 1.4e-07 2.2e-05 18.4 0.1 2 90 31 120 30 159 0.75 # 56635 # 57603 # -1 # ID=1_78;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 2_6 - 565 K_oxygenase PF13434.1 341 9.1e-06 18.3 0.0 1 3 0.0039 0.63 2.4 0.0 187 220 94 125 59 130 0.79 # 2771 # 4465 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 2_6 - 565 K_oxygenase PF13434.1 341 9.1e-06 18.3 0.0 2 3 3.3e-06 0.00054 12.5 0.0 132 231 218 308 202 332 0.82 # 2771 # 4465 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 2_6 - 565 K_oxygenase PF13434.1 341 9.1e-06 18.3 0.0 3 3 0.057 9.1 -1.4 0.0 132 160 346 369 314 377 0.67 # 2771 # 4465 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 3_5 - 181 TIGR03263 TIGR03263 180 0.0012 11.8 0.0 1 1 1.6e-05 0.0026 10.7 0.0 3 26 2 25 1 31 0.81 # 2203 # 2745 # -1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.567 2_53 - 680 AAA_19 PF13245.1 76 6e-10 32.4 0.1 1 1 3.9e-11 1.6e-09 31.0 0.1 14 75 21 86 11 87 0.88 # 34551 # 36590 # 1 # ID=2_53;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.502 1_78 - 323 AAA_19 PF13245.1 76 0.0001 15.6 0.2 1 1 1.3e-05 0.00052 13.3 0.1 6 37 36 67 32 119 0.75 # 56635 # 57603 # -1 # ID=1_78;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 1_31 - 72 AAA_19 PF13245.1 76 0.00026 14.3 0.0 1 1 7.5e-06 0.0003 14.1 0.0 15 42 42 68 29 71 0.79 # 21851 # 22066 # 1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.394 3_5 - 181 AAA_19 PF13245.1 76 0.00037 13.8 0.0 1 1 3.3e-05 0.0013 12.1 0.0 15 33 5 22 2 38 0.84 # 2203 # 2745 # -1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.567 1_31 - 72 DUF463 PF04317.7 443 0.0015 10.7 0.0 1 1 1.1e-05 0.0017 10.5 0.0 4 30 41 67 38 71 0.88 # 21851 # 22066 # 1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.394 1_78 - 323 AAA_10 PF12846.2 304 1.6e-06 21.3 0.1 1 3 8.4e-06 0.00067 12.7 0.0 3 34 42 73 40 106 0.73 # 56635 # 57603 # -1 # ID=1_78;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 1_78 - 323 AAA_10 PF12846.2 304 1.6e-06 21.3 0.1 2 3 0.0013 0.1 5.5 0.0 216 245 120 150 79 207 0.83 # 56635 # 57603 # -1 # ID=1_78;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 1_78 - 323 AAA_10 PF12846.2 304 1.6e-06 21.3 0.1 3 3 0.072 5.8 -0.3 0.0 106 170 239 301 179 314 0.57 # 56635 # 57603 # -1 # ID=1_78;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 1_31 - 72 AAA_10 PF12846.2 304 0.00066 12.7 0.1 1 2 0.0013 0.1 5.5 0.0 272 285 15 32 2 34 0.75 # 21851 # 22066 # 1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.394 1_31 - 72 AAA_10 PF12846.2 304 0.00066 12.7 0.1 2 2 0.0011 0.086 5.8 0.0 2 29 38 65 37 69 0.87 # 21851 # 22066 # 1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.394 2_6 - 565 FAD_oxidored PF12831.2 428 4.7e-06 19.4 3.6 1 1 2.9e-08 4.7e-06 19.4 3.6 2 41 100 138 99 167 0.83 # 2771 # 4465 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 2_6 - 565 DAO PF01266.19 358 5.7e-09 28.8 11.4 1 3 1.4e-08 2.2e-06 20.3 0.7 1 38 99 134 99 190 0.84 # 2771 # 4465 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 2_6 - 565 DAO PF01266.19 358 5.7e-09 28.8 11.4 2 3 0.032 5 -0.6 0.1 3 31 273 301 271 307 0.75 # 2771 # 4465 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 2_6 - 565 DAO PF01266.19 358 5.7e-09 28.8 11.4 3 3 7.6e-07 0.00012 14.6 0.6 152 228 314 392 307 470 0.74 # 2771 # 4465 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_78 - 323 ResIII PF04851.10 184 1.6e-05 18.4 0.2 1 2 1.7e-05 0.0028 11.1 0.3 29 101 44 110 20 121 0.72 # 56635 # 57603 # -1 # ID=1_78;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 1_78 - 323 ResIII PF04851.10 184 1.6e-05 18.4 0.2 2 2 0.00058 0.093 6.1 0.0 131 162 109 140 96 153 0.63 # 56635 # 57603 # -1 # ID=1_78;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 2_37 - 512 DUF3584 PF12128.3 1201 0.0017 9.2 3.3 1 1 3.2e-05 0.0026 8.6 3.3 304 377 12 86 3 100 0.88 # 23397 # 24932 # -1 # ID=2_37;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.604 1_5 - 372 DUF3584 PF12128.3 1201 0.07 3.9 61.1 1 1 0.0084 0.67 0.6 61.0 261 533 79 352 68 366 0.56 # 2777 # 3892 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.584 2_53 - 680 Viral_helicase1 PF01443.13 234 1.1e-11 38.3 0.1 1 3 7.8e-07 6.3e-05 16.1 0.0 2 59 21 77 20 88 0.79 # 34551 # 36590 # 1 # ID=2_53;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.502 2_53 - 680 Viral_helicase1 PF01443.13 234 1.1e-11 38.3 0.1 2 3 0.00024 0.02 8.0 0.0 61 118 208 263 179 348 0.74 # 34551 # 36590 # 1 # ID=2_53;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.502 2_53 - 680 Viral_helicase1 PF01443.13 234 1.1e-11 38.3 0.1 3 3 0.0006 0.048 6.7 0.0 187 232 540 606 528 608 0.61 # 34551 # 36590 # 1 # ID=2_53;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.502 1_31 - 72 Viral_helicase1 PF01443.13 234 0.001 12.1 0.1 1 1 1.7e-05 0.0014 11.7 0.1 3 29 42 66 40 70 0.83 # 21851 # 22066 # 1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.394 2_43 - 273 ThiS-like PF14453.1 57 0.0012 12.3 0.0 1 1 1.7e-05 0.0027 11.2 0.0 25 54 165 194 146 196 0.94 # 27733 # 28551 # -1 # ID=2_43;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.492 1_78 - 323 DUF2075 PF09848.4 352 2.9e-06 20.0 0.1 1 1 5.2e-08 4.1e-06 19.5 0.1 2 97 41 138 40 165 0.71 # 56635 # 57603 # -1 # ID=1_78;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 1_31 - 72 DUF2075 PF09848.4 352 3.8e-05 16.3 0.0 1 1 5.4e-07 4.3e-05 16.1 0.0 4 30 40 66 37 71 0.78 # 21851 # 22066 # 1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.394 2_6 - 565 NAD_binding_9 PF13454.1 156 4.6e-05 16.8 2.8 1 3 0.0081 1.3 2.3 0.1 1 41 101 135 101 162 0.81 # 2771 # 4465 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 2_6 - 565 NAD_binding_9 PF13454.1 156 4.6e-05 16.8 2.8 2 3 0.034 5.4 0.3 0.0 134 155 218 241 202 242 0.72 # 2771 # 4465 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 2_6 - 565 NAD_binding_9 PF13454.1 156 4.6e-05 16.8 2.8 3 3 6.6e-06 0.0011 12.4 0.1 112 155 321 366 311 367 0.85 # 2771 # 4465 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 2_6 - 565 Pyr_redox PF00070.22 80 5.7e-20 65.1 6.0 1 2 1.4e-06 0.00023 15.2 1.5 1 31 99 129 99 131 0.96 # 2771 # 4465 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 2_6 - 565 Pyr_redox PF00070.22 80 5.7e-20 65.1 6.0 2 2 6.2e-18 1e-15 51.6 0.2 1 74 271 345 271 354 0.90 # 2771 # 4465 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 2_43 - 273 Methyltransf_27 PF13708.1 194 9e-47 152.7 0.0 1 1 6.8e-49 1.1e-46 152.4 0.0 3 194 72 266 70 266 0.95 # 27733 # 28551 # -1 # ID=2_43;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.492 1_78 - 323 TrwB_AAD_bind PF10412.4 386 0.00023 13.4 0.5 1 3 1.7e-05 0.0027 9.9 0.0 14 44 39 69 35 76 0.83 # 56635 # 57603 # -1 # ID=1_78;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 1_78 - 323 TrwB_AAD_bind PF10412.4 386 0.00023 13.4 0.5 2 3 0.021 3.4 -0.3 0.0 234 275 115 158 112 169 0.78 # 56635 # 57603 # -1 # ID=1_78;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 1_78 - 323 TrwB_AAD_bind PF10412.4 386 0.00023 13.4 0.5 3 3 0.037 5.9 -1.1 0.0 128 182 251 306 240 311 0.71 # 56635 # 57603 # -1 # ID=1_78;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 1_31 - 72 AAA_11 PF13086.1 236 0.0004 13.5 0.0 1 1 2.5e-06 0.0004 13.5 0.0 11 43 32 63 17 71 0.78 # 21851 # 22066 # 1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.394 1_31 - 72 ArgK PF03308.11 267 8.2e-05 15.0 0.0 1 1 5.2e-07 8.3e-05 15.0 0.0 28 59 36 67 17 70 0.83 # 21851 # 22066 # 1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.394 1_78 - 323 PIF1 PF05970.9 364 4.6e-05 16.0 0.0 1 1 6.3e-07 0.0001 14.9 0.0 7 127 27 149 23 167 0.68 # 56635 # 57603 # -1 # ID=1_78;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 3_5 - 181 RNA_helicase PF00910.17 107 0.00092 13.0 0.0 1 1 9.1e-06 0.0015 12.3 0.0 1 26 3 28 3 47 0.84 # 2203 # 2745 # -1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.567 2_53 - 680 Herpes_ori_bp PF02399.10 824 0.00082 10.9 0.0 1 1 8.6e-06 0.0014 10.2 0.0 52 108 20 82 9 218 0.83 # 34551 # 36590 # 1 # ID=2_53;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.502 1_78 - 323 UPF0079 PF02367.12 123 0.00019 14.7 0.0 1 1 4.3e-06 0.00035 13.8 0.0 3 45 28 70 26 114 0.84 # 56635 # 57603 # -1 # ID=1_78;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 3_5 - 181 UPF0079 PF02367.12 123 0.00033 13.9 0.0 1 1 6.6e-06 0.00053 13.2 0.0 17 36 2 21 1 30 0.88 # 2203 # 2745 # -1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.567 2_6 - 565 AlaDh_PNT_C PF01262.16 168 3.8e-05 16.9 3.1 1 2 0.00051 0.082 6.0 0.8 15 50 92 127 89 130 0.90 # 2771 # 4465 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 2_6 - 565 AlaDh_PNT_C PF01262.16 168 3.8e-05 16.9 3.1 2 2 2.1e-05 0.0034 10.5 0.1 16 58 265 307 257 339 0.84 # 2771 # 4465 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 3_5 - 181 AAA_24 PF13479.1 213 0.00011 15.3 0.0 1 1 1.4e-06 0.00022 14.4 0.0 6 33 3 34 1 73 0.90 # 2203 # 2745 # -1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.567 1_54 - 129 BOF PF04076.8 103 1.1e-43 140.9 0.7 1 1 7.9e-46 1.3e-43 140.7 0.7 2 102 25 125 24 126 0.98 # 38196 # 38582 # 1 # ID=1_54;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.460 2_53 - 680 UvrD-helicase PF00580.16 315 6.5e-39 127.6 0.1 1 1 5.6e-40 9e-38 123.8 0.1 2 307 6 260 5 268 0.91 # 34551 # 36590 # 1 # ID=2_53;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.502 3_5 - 181 NACHT PF05729.7 166 2.5e-05 17.6 0.0 1 2 1.5e-06 0.00012 15.3 0.0 2 22 2 22 1 37 0.89 # 2203 # 2745 # -1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.567 3_5 - 181 NACHT PF05729.7 166 2.5e-05 17.6 0.0 2 2 0.091 7.3 -0.2 0.0 77 91 151 177 95 179 0.61 # 2203 # 2745 # -1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.567 1_78 - 323 NACHT PF05729.7 166 0.00077 12.7 0.2 1 1 2.3e-05 0.0018 11.5 0.2 1 28 41 68 41 140 0.77 # 56635 # 57603 # -1 # ID=1_78;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 5_1 - 236 AAA_25 PF13481.1 194 8.4e-25 80.8 0.0 1 1 7.1e-27 1.1e-24 80.4 0.0 48 193 1 140 1 141 0.86 # 137 # 844 # 1 # ID=5_1;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.679 3_5 - 181 AAA_28 PF13521.1 163 0.00022 14.8 0.0 1 1 2.9e-06 0.00047 13.7 0.0 2 30 3 34 2 165 0.89 # 2203 # 2745 # -1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.567 1_78 - 323 AAA_5 PF07728.9 139 0.00013 15.3 0.1 1 1 7e-06 0.0011 12.2 0.2 5 90 46 149 43 152 0.85 # 56635 # 57603 # -1 # ID=1_78;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 3_5 - 181 APS_kinase PF01583.15 157 2.2e-05 17.7 0.0 1 2 7.3e-06 0.0012 12.1 0.0 4 24 2 22 1 35 0.87 # 2203 # 2745 # -1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.567 3_5 - 181 APS_kinase PF01583.15 157 2.2e-05 17.7 0.0 2 2 0.0032 0.52 3.5 0.1 34 73 107 148 95 160 0.86 # 2203 # 2745 # -1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.567 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/fa24c0aa-b335-41e7-a607-9ca09cacdd71 # Target file: checkm_output/bins/pm53/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm53/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/fa24c0aa-b335-41e7-a607-9ca09cacdd71 checkm_output/bins/pm53/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 17:07:01 2020 # [ok]