# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_29 - 374 UPF0020 PF01170.13 180 0.00026 12.8 0.0 1 2 0.00019 0.012 7.4 0.0 95 140 30 78 17 109 0.70 # 17112 # 18233 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.416 1_29 - 374 UPF0020 PF01170.13 180 0.00026 12.8 0.0 2 2 0.0038 0.24 3.2 0.0 24 48 322 345 304 369 0.76 # 17112 # 18233 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.416 1_37 - 642 Terminase_6 PF03237.10 384 1.3e-05 16.4 0.0 1 1 3.9e-07 2.4e-05 15.4 0.0 3 116 75 190 73 215 0.86 # 22668 # 24593 # 1 # ID=1_37;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.543 1_63 - 389 MipZ PF09140.6 261 0.00033 12.0 0.1 1 2 0.0001 0.0063 7.8 0.0 4 47 110 153 107 164 0.86 # 46756 # 47922 # -1 # ID=1_63;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.426 1_63 - 389 MipZ PF09140.6 261 0.00033 12.0 0.1 2 2 0.0055 0.35 2.1 0.0 87 126 223 262 198 347 0.76 # 46756 # 47922 # -1 # ID=1_63;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.426 1_29 - 374 N6_N4_Mtase PF01555.13 231 2.4e-49 160.1 0.0 1 1 4e-50 2.5e-48 156.8 0.0 1 228 44 363 44 366 0.88 # 17112 # 18233 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.416 1_63 - 389 ArsA_ATPase PF02374.10 305 2e-07 22.5 0.4 1 2 3.6e-07 2.3e-05 15.8 0.0 5 36 111 142 107 151 0.88 # 46756 # 47922 # -1 # ID=1_63;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.426 1_63 - 389 ArsA_ATPase PF02374.10 305 2e-07 22.5 0.4 2 2 0.0011 0.072 4.3 0.0 125 136 233 244 223 254 0.84 # 46756 # 47922 # -1 # ID=1_63;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.426 1_63 - 389 VirC1 PF07015.6 231 1.6e-05 16.3 1.1 1 3 1.1e-05 0.00068 11.0 0.0 4 42 109 147 107 153 0.91 # 46756 # 47922 # -1 # ID=1_63;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.426 1_63 - 389 VirC1 PF07015.6 231 1.6e-05 16.3 1.1 2 3 0.0058 0.36 2.0 0.7 84 140 235 291 222 365 0.75 # 46756 # 47922 # -1 # ID=1_63;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.426 1_63 - 389 VirC1 PF07015.6 231 1.6e-05 16.3 1.1 3 3 0.033 2.1 -0.5 0.1 35 64 348 377 337 382 0.68 # 46756 # 47922 # -1 # ID=1_63;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.426 1_63 - 389 CbiA PF01656.18 195 4.6e-30 96.7 0.0 1 1 9.6e-32 6.1e-30 96.3 0.0 1 171 109 317 109 340 0.78 # 46756 # 47922 # -1 # ID=1_63;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.426 1_32 - 146 Val_tRNA-synt_C PF10458.4 66 0.00019 13.8 0.2 1 2 0.019 1.2 1.6 0.0 41 65 23 47 22 48 0.86 # 19095 # 19532 # 1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.511 1_32 - 146 Val_tRNA-synt_C PF10458.4 66 0.00019 13.8 0.2 2 2 6.5e-05 0.0041 9.5 0.0 1 24 53 76 53 83 0.93 # 19095 # 19532 # 1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.511 1_10 - 976 PCMT PF01135.14 210 5.9e-05 14.9 0.0 1 1 2.1e-06 0.00013 13.8 0.0 14 162 465 616 458 621 0.81 # 6693 # 9620 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.485 1_38 - 69 Ribosomal_S5 PF00333.15 67 0.00032 12.7 0.0 1 1 7.7e-06 0.00049 12.1 0.0 7 28 18 39 13 42 0.87 # 24590 # 24796 # 1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.551 1_63 - 389 AAA_31 PF13614.1 157 3.9e-09 28.9 0.0 1 2 7.6e-09 4.8e-07 22.1 0.0 2 50 108 156 107 196 0.91 # 46756 # 47922 # -1 # ID=1_63;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.426 1_63 - 389 AAA_31 PF13614.1 157 3.9e-09 28.9 0.0 2 2 0.0017 0.11 4.7 0.0 116 151 230 267 207 272 0.82 # 46756 # 47922 # -1 # ID=1_63;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.426 1_29 - 374 Methyltransf_26 PF13659.1 117 4.3e-16 51.3 0.0 1 2 7.9e-13 5e-11 35.0 0.0 52 116 25 97 13 98 0.84 # 17112 # 18233 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.416 1_29 - 374 Methyltransf_26 PF13659.1 117 4.3e-16 51.3 0.0 2 2 4.1e-06 0.00026 13.3 0.0 2 34 328 359 327 369 0.90 # 17112 # 18233 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.416 1_10 - 976 Herpes_ori_bp PF02399.10 824 1.2e-07 22.3 0.0 1 2 4.1e-08 2.6e-06 17.9 0.0 46 198 522 674 490 684 0.77 # 6693 # 9620 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.485 1_10 - 976 Herpes_ori_bp PF02399.10 824 1.2e-07 22.3 0.0 2 2 0.0024 0.15 2.1 0.0 273 351 722 811 701 815 0.76 # 6693 # 9620 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.485 1_37 - 642 Terminase_GpA PF05876.7 557 1.5e-179 590.1 0.4 1 1 3e-181 1.9e-179 589.7 0.4 1 547 39 600 39 607 0.97 # 22668 # 24593 # 1 # ID=1_37;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.543 1_55 - 191 Lambda_tail_I PF06805.7 82 7.5e-17 53.3 0.0 1 1 2.1e-18 1.3e-16 52.5 0.0 25 82 2 64 1 64 0.98 # 36826 # 37398 # 1 # ID=1_55;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.579 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/b5f2cc16-3bdc-4540-b8a5-8dcc7e774f30 # Target file: checkm_output/bins/pm523/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm523/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/b5f2cc16-3bdc-4540-b8a5-8dcc7e774f30 checkm_output/bins/pm523/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 17:06:54 2020 # [ok]