# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 2_8 - 325 Mg_chelatase PF01078.16 207 1e-08 27.6 0.0 1 2 0.00012 0.013 7.6 0.0 25 45 32 52 26 60 0.89 # 3339 # 4313 # 1 # ID=2_8;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.525 2_8 - 325 Mg_chelatase PF01078.16 207 1e-08 27.6 0.0 2 2 1e-07 1.1e-05 17.7 0.0 92 157 86 149 79 158 0.89 # 3339 # 4313 # 1 # ID=2_8;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.525 5_4 - 181 cobW PF02492.14 178 0.0008 11.9 0.0 1 1 1.3e-05 0.0014 11.1 0.0 2 21 2 21 1 29 0.81 # 1393 # 1935 # -1 # ID=5_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.558 1_35 - 402 MipZ PF09140.6 261 2e-06 20.0 0.0 1 2 0.0027 0.29 3.1 0.0 3 50 111 163 109 193 0.73 # 28060 # 29265 # -1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.456 1_35 - 402 MipZ PF09140.6 261 2e-06 20.0 0.0 2 2 8.7e-07 9.3e-05 14.6 0.0 87 136 233 282 220 296 0.87 # 28060 # 29265 # -1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.456 2_17 - 301 3HCDH_N PF02737.13 180 2.7e-07 23.4 0.7 1 1 2.1e-08 1.1e-06 21.3 0.7 1 40 6 45 6 116 0.91 # 12675 # 13577 # -1 # ID=2_17;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.643 1_21 - 562 3HCDH_N PF02737.13 180 0.017 7.7 6.6 1 2 0.017 0.92 2.1 2.8 1 30 100 129 100 133 0.93 # 16883 # 18568 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_21 - 562 3HCDH_N PF02737.13 180 0.017 7.7 6.6 2 2 0.0006 0.032 6.9 0.1 2 36 273 307 272 359 0.75 # 16883 # 18568 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_21 - 562 GIDA PF01134.17 392 2.8e-06 19.4 5.3 1 2 5.2e-08 2.8e-06 19.4 5.3 1 53 100 154 100 290 0.87 # 16883 # 18568 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_21 - 562 GIDA PF01134.17 392 2.8e-06 19.4 5.3 2 2 0.02 1.1 1.0 0.3 349 385 390 426 376 430 0.79 # 16883 # 18568 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 2_17 - 301 GIDA PF01134.17 392 0.0054 8.6 3.4 1 1 0.00014 0.0075 8.1 3.4 2 72 7 78 6 90 0.89 # 12675 # 13577 # -1 # ID=2_17;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.643 1_21 - 562 Pyr_redox_2 PF07992.9 201 7.5e-43 139.7 0.0 1 1 1.6e-44 1.7e-42 138.6 0.0 1 199 100 407 100 409 0.96 # 16883 # 18568 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 2_8 - 325 AAA_2 PF07724.9 171 6.5e-06 19.1 0.0 1 1 1.2e-07 1.3e-05 18.1 0.0 6 131 32 152 30 178 0.85 # 3339 # 4313 # 1 # ID=2_8;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.525 5_4 - 181 AAA_22 PF13401.1 131 1.7e-05 18.0 0.0 1 1 4.7e-07 5e-05 16.5 0.0 6 50 2 50 1 105 0.72 # 1393 # 1935 # -1 # ID=5_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.558 3_3 - 478 DNA_methylase PF00145.12 335 2.4e-79 259.8 0.0 1 1 4.4e-81 4.8e-79 258.8 0.0 1 331 96 457 96 460 0.86 # 1194 # 2627 # 1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=3-4bp;gc_cont=0.481 1_21 - 562 Trp_halogenase PF04820.9 454 0.0048 8.5 3.3 1 1 8.1e-05 0.0087 7.6 3.3 1 47 100 143 100 151 0.76 # 16883 # 18568 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_45 - 237 AAA_15 PF13175.1 415 5.8e-09 28.4 0.0 1 1 7.2e-11 7.8e-09 28.0 0.0 2 46 5 48 4 67 0.90 # 36660 # 37370 # 1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.534 1_21 - 562 NAD_binding_7 PF13241.1 103 4.1e-06 20.0 1.2 1 2 1.9e-05 0.002 11.4 0.2 9 38 100 129 96 164 0.90 # 16883 # 18568 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_21 - 562 NAD_binding_7 PF13241.1 103 4.1e-06 20.0 1.2 2 2 0.00049 0.052 6.9 0.1 8 45 271 314 264 382 0.66 # 16883 # 18568 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 5_4 - 181 AAA_17 PF13207.1 121 2.5e-06 21.3 0.0 1 1 4.8e-08 5.1e-06 20.3 0.0 1 32 2 34 2 175 0.59 # 1393 # 1935 # -1 # ID=5_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.558 1_45 - 237 AAA_21 PF13304.1 303 1.4e-05 18.2 0.0 1 1 2.3e-07 2.5e-05 17.3 0.0 2 24 27 49 27 83 0.83 # 36660 # 37370 # 1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.534 2_2 - 202 MobB PF03205.9 140 0.00042 13.1 0.0 1 1 5.8e-06 0.00062 12.5 0.0 2 26 21 45 20 52 0.91 # 111 # 716 # -1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.561 2_2 - 202 T2SE PF00437.15 272 0.00067 11.6 0.0 1 1 8.8e-06 0.00094 11.1 0.0 113 152 4 43 1 52 0.90 # 111 # 716 # -1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.561 5_4 - 181 Cytidylate_kin2 PF13189.1 179 0.0011 11.9 0.0 1 2 9.1e-05 0.0098 8.8 0.0 1 22 2 23 2 44 0.81 # 1393 # 1935 # -1 # ID=5_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.558 5_4 - 181 Cytidylate_kin2 PF13189.1 179 0.0011 11.9 0.0 2 2 0.026 2.8 0.8 0.0 110 135 96 122 94 136 0.74 # 1393 # 1935 # -1 # ID=5_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.558 5_4 - 181 Zeta_toxin PF06414.7 201 8.6e-05 14.7 0.0 1 2 2.1e-05 0.0022 10.1 0.0 19 50 3 32 1 39 0.78 # 1393 # 1935 # -1 # ID=5_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.558 5_4 - 181 Zeta_toxin PF06414.7 201 8.6e-05 14.7 0.0 2 2 0.0045 0.48 2.4 0.0 94 123 73 102 57 160 0.77 # 1393 # 1935 # -1 # ID=5_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.558 1_21 - 562 NAD_binding_8 PF13450.1 68 7.4e-05 15.8 1.2 1 1 6.9e-07 7.4e-05 15.8 1.2 1 35 103 136 103 155 0.91 # 16883 # 18568 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 2_17 - 301 F420_oxidored PF03807.12 96 2.3e-06 21.0 0.6 1 1 6.5e-08 7e-06 19.5 0.2 2 78 7 79 6 98 0.82 # 12675 # 13577 # -1 # ID=2_17;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.643 1_45 - 237 SMC_N PF02463.14 220 2.9e-10 32.7 0.0 1 1 3.9e-12 4.1e-10 32.2 0.0 2 71 4 69 3 79 0.85 # 36660 # 37370 # 1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.534 2_2 - 202 Arch_ATPase PF01637.13 234 0.0009 11.9 0.0 1 1 1.2e-05 0.0012 11.5 0.0 10 49 7 48 5 75 0.71 # 111 # 716 # -1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.561 2_8 - 325 AAA_16 PF13191.1 185 0.0004 13.4 0.0 1 1 7.1e-06 0.00076 12.5 0.0 18 64 21 69 10 125 0.78 # 3339 # 4313 # 1 # ID=2_8;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.525 1_45 - 237 AAA_23 PF13476.1 202 1.7e-11 37.8 0.0 1 1 1.6e-13 1.7e-11 37.8 0.0 1 53 6 58 6 202 0.88 # 36660 # 37370 # 1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.534 5_4 - 181 AAA_18 PF13238.1 129 2.1e-09 30.8 0.0 1 1 3.9e-11 4.2e-09 29.8 0.0 1 126 3 134 3 137 0.76 # 1393 # 1935 # -1 # ID=5_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.558 2_7 - 223 AAA_13 PF13166.1 712 0.0028 9.1 20.8 1 2 8.6e-07 9.2e-05 14.0 12.3 333 457 6 132 3 140 0.91 # 2500 # 3168 # -1 # ID=2_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.492 2_7 - 223 AAA_13 PF13166.1 712 0.0028 9.1 20.8 2 2 0.012 1.3 0.3 1.2 366 397 169 201 149 222 0.35 # 2500 # 3168 # -1 # ID=2_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.492 1_35 - 402 CbiA PF01656.18 195 1.6e-18 59.8 0.0 1 1 2.8e-20 3e-18 58.9 0.0 1 142 111 292 111 327 0.76 # 28060 # 29265 # -1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.456 1_21 - 562 HI0933_like PF03486.9 409 4.6e-09 28.1 5.0 1 2 4.3e-07 4.6e-05 15.0 2.8 2 33 100 131 99 139 0.91 # 16883 # 18568 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_21 - 562 HI0933_like PF03486.9 409 4.6e-09 28.1 5.0 2 2 1.7e-06 0.00018 13.0 0.0 83 163 286 362 281 379 0.85 # 16883 # 18568 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 4_3 - 129 Ribosomal_S20p PF01649.13 84 0.0003 14.2 0.1 1 1 4.9e-06 0.00053 13.4 0.1 6 47 56 97 53 115 0.77 # 951 # 1337 # 1 # ID=4_3;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.444 1_45 - 237 AAA_29 PF13555.1 62 5.8e-08 25.2 0.0 1 1 9.2e-10 9.8e-08 24.5 0.0 2 49 5 50 4 57 0.82 # 36660 # 37370 # 1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.534 1_21 - 562 FAD_binding_2 PF00890.19 417 1e-06 20.8 5.3 1 3 9.5e-09 1e-06 20.8 5.3 2 32 101 131 100 138 0.91 # 16883 # 18568 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_21 - 562 FAD_binding_2 PF00890.19 417 1e-06 20.8 5.3 2 3 0.034 3.6 -0.8 0.2 142 204 311 366 286 382 0.67 # 16883 # 18568 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_21 - 562 FAD_binding_2 PF00890.19 417 1e-06 20.8 5.3 3 3 0.0019 0.2 3.4 0.1 373 402 374 405 368 419 0.86 # 16883 # 18568 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 2_8 - 325 AAA PF00004.24 132 1.7e-05 18.1 0.0 1 1 3.4e-07 3.6e-05 17.0 0.0 1 125 32 167 32 171 0.73 # 3339 # 4313 # 1 # ID=2_8;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.525 1_21 - 562 Thi4 PF01946.12 230 0.00029 13.0 0.4 1 1 6.3e-06 0.00068 11.7 0.4 19 70 100 150 95 158 0.88 # 16883 # 18568 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 2_8 - 325 Sigma54_activat PF00158.21 168 4.2e-64 208.0 0.0 1 1 5.5e-66 5.9e-64 207.6 0.0 2 163 9 170 8 175 0.98 # 3339 # 4313 # 1 # ID=2_8;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.525 1_21 - 562 Pyr_redox_3 PF13738.1 203 1.5e-18 60.5 0.1 1 3 1.5e-06 0.00016 14.8 0.0 164 199 95 130 48 134 0.85 # 16883 # 18568 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_21 - 562 Pyr_redox_3 PF13738.1 203 1.5e-18 60.5 0.1 2 3 5.8e-09 6.2e-07 22.6 0.0 115 201 219 304 174 306 0.81 # 16883 # 18568 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_21 - 562 Pyr_redox_3 PF13738.1 203 1.5e-18 60.5 0.1 3 3 5.6e-08 6e-06 19.4 0.0 89 147 317 372 309 431 0.82 # 16883 # 18568 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 2_17 - 301 NAD_binding_11 PF14833.1 122 5.1e-38 122.9 0.3 1 2 0.029 3.1 0.9 1.1 8 53 96 141 92 153 0.85 # 12675 # 13577 # -1 # ID=2_17;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.643 2_17 - 301 NAD_binding_11 PF14833.1 122 5.1e-38 122.9 0.3 2 2 4.7e-40 5.1e-38 122.9 0.3 1 121 170 289 170 290 0.98 # 12675 # 13577 # -1 # ID=2_17;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.643 2_17 - 301 NAD_binding_2 PF03446.10 163 4.7e-41 133.3 3.7 1 1 6.4e-43 6.9e-41 132.8 3.7 2 162 5 166 4 167 0.96 # 12675 # 13577 # -1 # ID=2_17;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.643 1_35 - 402 AAA_31 PF13614.1 157 0.0001 15.3 0.0 1 1 5.5e-06 0.00058 12.8 0.0 108 147 235 273 230 279 0.86 # 28060 # 29265 # -1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.456 5_4 - 181 AAA_33 PF13671.1 143 3.3e-10 33.0 0.0 1 1 4.3e-12 4.6e-10 32.6 0.0 2 127 3 130 2 151 0.73 # 1393 # 1935 # -1 # ID=5_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.558 2_17 - 301 Methyltransf_26 PF13659.1 117 0.0026 10.8 6.3 1 1 4.6e-05 0.0049 9.9 6.3 13 105 14 155 6 246 0.76 # 12675 # 13577 # -1 # ID=2_17;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.643 2_17 - 301 2-Hacid_dh_C PF02826.14 178 1.1e-06 20.9 0.1 1 1 1.9e-08 2e-06 20.0 0.1 36 146 4 118 2 124 0.86 # 12675 # 13577 # -1 # ID=2_17;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.643 1_21 - 562 XdhC_C PF13478.1 136 0.00089 12.6 1.0 1 2 0.08 8.6 -0.3 0.1 1 29 101 129 101 163 0.86 # 16883 # 18568 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_21 - 562 XdhC_C PF13478.1 136 0.00089 12.6 1.0 2 2 6.9e-05 0.0074 9.6 0.1 1 66 273 351 273 371 0.64 # 16883 # 18568 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_45 - 237 DUF2813 PF11398.3 373 6.7e-05 15.0 0.3 1 2 2e-06 0.00021 13.4 0.0 11 49 12 51 3 56 0.79 # 36660 # 37370 # 1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.534 1_45 - 237 DUF2813 PF11398.3 373 6.7e-05 15.0 0.3 2 2 0.041 4.4 -0.8 0.1 94 148 126 180 118 226 0.52 # 36660 # 37370 # 1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.534 1_45 - 237 ABC_tran PF00005.22 137 9.8e-05 15.7 0.0 1 1 1.4e-06 0.00015 15.1 0.0 15 113 28 155 18 173 0.74 # 36660 # 37370 # 1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.534 1_21 - 562 K_oxygenase PF13434.1 341 3.6e-06 19.0 0.2 1 3 0.0041 0.44 2.3 0.2 187 223 95 129 86 132 0.74 # 16883 # 18568 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_21 - 562 K_oxygenase PF13434.1 341 3.6e-06 19.0 0.2 2 3 2.9e-06 0.00031 12.7 0.0 130 231 217 309 200 339 0.79 # 16883 # 18568 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_21 - 562 K_oxygenase PF13434.1 341 3.6e-06 19.0 0.2 3 3 0.022 2.3 -0.0 0.0 139 160 345 366 314 376 0.63 # 16883 # 18568 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 2_17 - 301 UDPG_MGDP_dh_N PF03721.9 185 7.7e-06 18.4 0.2 1 2 2e-06 0.00021 13.7 0.1 2 39 6 43 5 50 0.92 # 12675 # 13577 # -1 # ID=2_17;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.643 2_17 - 301 UDPG_MGDP_dh_N PF03721.9 185 7.7e-06 18.4 0.2 2 2 0.0061 0.65 2.3 0.0 107 139 86 117 82 126 0.77 # 12675 # 13577 # -1 # ID=2_17;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.643 5_4 - 181 AAA_19 PF13245.1 76 0.00046 13.0 0.0 1 1 1.8e-05 0.0019 11.0 0.0 15 33 5 22 2 36 0.85 # 1393 # 1935 # -1 # ID=5_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.558 2_2 - 202 DUF463 PF04317.7 443 2.1e-73 240.3 0.0 1 1 2.2e-75 2.4e-73 240.1 0.0 1 180 20 198 20 201 0.98 # 111 # 716 # -1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.561 1_21 - 562 FAD_oxidored PF12831.2 428 6.4e-07 21.7 3.8 1 2 5.9e-09 6.4e-07 21.7 3.8 1 41 100 139 100 159 0.83 # 16883 # 18568 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_21 - 562 FAD_oxidored PF12831.2 428 6.4e-07 21.7 3.8 2 2 0.01 1.1 1.2 0.0 84 120 305 341 261 364 0.71 # 16883 # 18568 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_21 - 562 DAO PF01266.19 358 7.1e-12 37.8 7.5 1 2 1.9e-08 2e-06 19.9 1.5 2 35 101 134 100 161 0.85 # 16883 # 18568 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_21 - 562 DAO PF01266.19 358 7.1e-12 37.8 7.5 2 2 7.7e-09 8.2e-07 21.1 0.5 151 239 314 400 274 529 0.80 # 16883 # 18568 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_21 - 562 Pyr_redox PF00070.22 80 1e-19 63.8 5.4 1 2 1.2e-06 0.00013 15.4 1.5 2 31 101 130 100 132 0.95 # 16883 # 18568 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_21 - 562 Pyr_redox PF00070.22 80 1e-19 63.8 5.4 2 2 3.2e-17 3.4e-15 49.3 0.1 1 72 272 342 272 351 0.91 # 16883 # 18568 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 2_8 - 325 Sigma54_activ_2 PF14532.1 138 7.9e-25 80.5 0.0 1 1 2.6e-26 2.8e-24 78.8 0.0 1 138 9 179 9 179 0.90 # 3339 # 4313 # 1 # ID=2_8;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.525 2_17 - 301 TrkA_N PF02254.13 116 3.6e-05 16.8 0.0 1 1 8e-07 8.6e-05 15.6 0.0 1 42 7 48 7 79 0.86 # 12675 # 13577 # -1 # ID=2_17;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.643 1_21 - 562 AlaDh_PNT_C PF01262.16 168 9.1e-07 21.6 2.3 1 2 7.8e-06 0.00042 12.9 0.3 16 50 94 128 80 131 0.87 # 16883 # 18568 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_21 - 562 AlaDh_PNT_C PF01262.16 168 9.1e-07 21.6 2.3 2 2 0.00023 0.012 8.1 0.1 19 60 269 310 260 341 0.84 # 16883 # 18568 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 2_17 - 301 AlaDh_PNT_C PF01262.16 168 0.00014 14.5 1.6 1 2 8.4e-06 0.00045 12.8 0.1 21 66 5 50 2 62 0.90 # 12675 # 13577 # -1 # ID=2_17;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.643 2_17 - 301 AlaDh_PNT_C PF01262.16 168 0.00014 14.5 1.6 2 2 0.056 3 0.4 0.2 13 42 84 113 72 117 0.84 # 12675 # 13577 # -1 # ID=2_17;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.643 5_4 - 181 AAA_24 PF13479.1 213 0.00011 14.9 0.0 1 1 1.2e-06 0.00013 14.5 0.0 6 33 3 34 1 99 0.87 # 1393 # 1935 # -1 # ID=5_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.558 5_4 - 181 NACHT PF05729.7 166 8.8e-05 15.2 0.1 1 1 2.1e-06 0.00022 13.9 0.0 2 21 2 21 1 29 0.91 # 1393 # 1935 # -1 # ID=5_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.558 5_4 - 181 AAA_28 PF13521.1 163 0.00017 14.6 0.0 1 1 4.7e-06 0.0005 13.0 0.0 2 29 3 33 2 58 0.77 # 1393 # 1935 # -1 # ID=5_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.558 2_8 - 325 AAA_5 PF07728.9 139 2.7e-09 29.9 0.0 1 1 3.8e-11 4.1e-09 29.3 0.0 1 123 31 150 31 169 0.81 # 3339 # 4313 # 1 # ID=2_8;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.525 5_4 - 181 APS_kinase PF01583.15 157 1.4e-05 17.8 0.0 1 2 1e-05 0.0011 11.6 0.0 4 24 2 22 1 30 0.89 # 1393 # 1935 # -1 # ID=5_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.558 5_4 - 181 APS_kinase PF01583.15 157 1.4e-05 17.8 0.0 2 2 0.0021 0.22 4.1 0.1 34 72 107 147 91 157 0.86 # 1393 # 1935 # -1 # ID=5_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.558 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/5a2389e9-a422-4b32-9d94-ec780593eaeb # Target file: checkm_output/bins/pm521/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm521/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/5a2389e9-a422-4b32-9d94-ec780593eaeb checkm_output/bins/pm521/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 17:06:55 2020 # [ok]