# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_29 - 332 cobW PF02492.14 178 1.5e-06 20.1 0.0 1 1 4.1e-08 2.7e-06 19.2 0.0 3 45 161 202 159 257 0.77 # 21554 # 22549 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 1_29 - 332 Parvo_NS1 PF01057.12 272 0.00057 11.1 0.0 1 1 1.4e-05 0.00096 10.4 0.0 104 138 148 182 140 188 0.90 # 21554 # 22549 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 2_24 - 578 Torsin PF06309.6 127 7.5e-06 18.2 0.0 1 1 3.4e-07 2.3e-05 16.6 0.0 19 83 460 524 452 544 0.84 # 15298 # 17031 # 1 # ID=2_24;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.535 1_29 - 332 IstB_IS21 PF01695.12 178 1.9e-05 16.5 0.0 1 1 4.5e-07 3e-05 15.8 0.0 44 73 155 184 127 201 0.82 # 21554 # 22549 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 1_23 - 238 3HCDH_N PF02737.13 180 0.00089 11.3 1.9 1 2 0.00032 0.022 6.8 0.1 68 118 33 83 18 86 0.84 # 16537 # 17250 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.511 1_23 - 238 3HCDH_N PF02737.13 180 0.00089 11.3 1.9 2 2 0.0023 0.15 4.0 0.2 41 80 143 180 111 210 0.68 # 16537 # 17250 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.511 2_25 - 502 UvrD_C_2 PF13538.1 104 6.4e-17 54.0 0.1 1 1 3.4e-18 2.3e-16 52.2 0.1 2 102 220 319 219 321 0.76 # 17028 # 18533 # 1 # ID=2_25;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.521 1_29 - 332 AAA_2 PF07724.9 171 3.8e-06 19.2 0.0 1 1 1e-07 6.9e-06 18.4 0.0 3 54 158 204 156 216 0.89 # 21554 # 22549 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 2_23 - 510 DUF87 PF01935.12 229 7.4e-08 24.8 0.0 1 1 3.4e-09 1.1e-07 24.2 0.0 10 68 116 170 109 262 0.85 # 13769 # 15298 # 1 # ID=2_23;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.439 1_29 - 332 DUF87 PF01935.12 229 1.8e-06 20.3 0.0 1 1 9.7e-08 3.2e-06 19.4 0.0 9 61 144 195 138 196 0.78 # 21554 # 22549 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 1_29 - 332 AAA_22 PF13401.1 131 1.8e-07 23.7 0.0 1 1 1.2e-08 4.1e-07 22.6 0.0 3 54 157 202 153 241 0.74 # 21554 # 22549 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 1_22 - 867 AAA_22 PF13401.1 131 7e-05 15.3 0.0 1 2 0.068 2.3 0.7 0.0 94 114 153 172 75 184 0.82 # 13919 # 16519 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.498 1_22 - 867 AAA_22 PF13401.1 131 7e-05 15.3 0.0 2 2 5e-05 0.0017 10.9 0.0 5 28 492 515 489 549 0.85 # 13919 # 16519 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.498 1_10 - 478 DNA_methylase PF00145.12 335 1.5e-79 259.8 0.0 1 1 4.4e-81 3e-79 258.8 0.0 1 331 96 457 96 460 0.86 # 8070 # 9503 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=3-4bp;gc_cont=0.481 1_29 - 332 AAA_17 PF13207.1 121 0.00027 14.1 0.1 1 1 2.8e-05 0.00064 12.9 0.1 2 40 161 195 160 229 0.75 # 21554 # 22549 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 2_23 - 510 AAA_17 PF13207.1 121 0.00037 13.7 0.1 1 1 6.7e-05 0.0015 11.7 0.0 4 42 131 191 129 260 0.58 # 13769 # 15298 # 1 # ID=2_23;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.439 1_22 - 867 AAA_17 PF13207.1 121 0.00037 13.7 3.9 1 1 0.00023 0.005 10.0 0.0 3 21 495 513 494 565 0.80 # 13919 # 16519 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.498 1_29 - 332 MobB PF03205.9 140 5.9e-06 18.4 1.9 1 1 1.5e-07 1e-05 17.6 0.3 2 39 160 196 159 201 0.83 # 21554 # 22549 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 3_1 - 265 ADH_zinc_N PF00107.21 130 1.3e-14 46.2 0.0 1 1 3.5e-16 2.3e-14 45.4 0.0 1 60 197 258 197 262 0.93 # 109 # 903 # -1 # ID=3_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.567 2_24 - 578 PhoH PF02562.11 205 5.8e-06 18.0 1.1 1 1 3.4e-07 1.1e-05 17.0 0.1 6 45 479 518 475 543 0.73 # 15298 # 17031 # 1 # ID=2_24;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.535 1_29 - 332 PhoH PF02562.11 205 0.00021 12.9 0.0 1 1 1.1e-05 0.00038 12.1 0.0 14 45 153 184 143 210 0.79 # 21554 # 22549 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 1_29 - 332 AAA_7 PF12775.2 272 6.6e-05 14.4 0.0 1 1 2.3e-06 0.00016 13.2 0.0 25 64 150 189 139 209 0.86 # 21554 # 22549 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 1_29 - 332 T2SE PF00437.15 272 2.1e-52 170.0 0.1 1 1 7.4e-54 2.5e-52 169.7 0.1 3 271 10 311 8 312 0.94 # 21554 # 22549 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 2_23 - 510 T2SE PF00437.15 272 0.00059 11.1 0.1 1 1 3.1e-05 0.001 10.3 0.1 130 149 128 147 103 160 0.84 # 13769 # 15298 # 1 # ID=2_23;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.439 1_29 - 332 Zeta_toxin PF06414.7 201 1e-06 20.3 0.0 1 1 2.7e-08 1.8e-06 19.5 0.0 12 51 154 193 145 204 0.86 # 21554 # 22549 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 1_29 - 332 Arch_ATPase PF01637.13 234 5.9e-06 18.4 0.0 1 1 1.6e-07 1.1e-05 17.6 0.0 15 68 155 205 149 226 0.87 # 21554 # 22549 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 1_29 - 332 AAA_16 PF13191.1 185 4.5e-07 22.3 0.0 1 1 3.4e-08 1.1e-06 21.0 0.0 24 61 158 195 149 274 0.82 # 21554 # 22549 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 1_22 - 867 AAA_16 PF13191.1 185 0.00067 12.0 0.0 1 1 0.00018 0.006 8.9 0.0 25 47 492 514 481 574 0.85 # 13919 # 16519 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.498 1_29 - 332 AAA_23 PF13476.1 202 0.0003 13.5 0.0 1 1 2.2e-05 0.00048 12.8 0.0 19 39 158 178 105 184 0.91 # 21554 # 22549 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 1_22 - 867 AAA_23 PF13476.1 202 0.0032 10.1 0.0 1 1 0.00014 0.0032 10.1 0.0 22 39 494 511 464 521 0.84 # 13919 # 16519 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.498 1_23 - 238 AAA_23 PF13476.1 202 0.05 6.2 13.9 1 1 0.00027 0.0061 9.2 1.7 97 196 67 185 58 218 0.59 # 16537 # 17250 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.511 1_29 - 332 AAA_18 PF13238.1 129 3.2e-06 19.9 0.0 1 1 2e-07 6.5e-06 18.8 0.0 1 29 161 194 161 213 0.77 # 21554 # 22549 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 2_23 - 510 AAA_18 PF13238.1 129 8.6e-05 15.2 0.0 1 1 5.2e-06 0.00017 14.2 0.0 3 21 131 149 130 238 0.78 # 13769 # 15298 # 1 # ID=2_23;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.439 2_20 - 239 CbiA PF01656.18 195 2.8e-06 19.2 0.6 1 2 0.0004 0.027 6.2 0.1 1 19 3 21 3 25 0.89 # 11716 # 12432 # -1 # ID=2_20;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.418 2_20 - 239 CbiA PF01656.18 195 2.8e-06 19.2 0.6 2 2 9.1e-06 0.00061 11.5 0.0 109 165 81 142 29 173 0.76 # 11716 # 12432 # -1 # ID=2_20;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.418 1_29 - 332 KaiC PF06745.8 227 0.00011 13.6 0.0 1 1 3e-06 0.0002 12.8 0.0 16 53 155 190 148 240 0.77 # 21554 # 22549 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 2_23 - 510 AAA_14 PF13173.1 128 8.3e-06 18.1 0.0 1 2 4.3e-06 0.00014 14.1 0.0 6 89 130 213 125 234 0.76 # 13769 # 15298 # 1 # ID=2_23;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.439 2_23 - 510 AAA_14 PF13173.1 128 8.3e-06 18.1 0.0 2 2 0.043 1.5 1.1 0.0 53 81 340 372 300 391 0.57 # 13769 # 15298 # 1 # ID=2_23;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.439 1_29 - 332 AAA_14 PF13173.1 128 0.00018 13.7 0.1 1 2 0.0044 0.15 4.3 0.0 64 96 135 165 98 166 0.69 # 21554 # 22549 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 1_29 - 332 AAA_14 PF13173.1 128 0.00018 13.7 0.1 2 2 6.3e-05 0.0021 10.3 0.0 2 35 158 191 157 213 0.80 # 21554 # 22549 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 1_29 - 332 GvpD PF07088.6 484 1.7e-06 18.9 0.0 1 1 3.9e-08 2.6e-06 18.3 0.0 10 89 158 241 150 262 0.76 # 21554 # 22549 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 1_29 - 332 AAA_29 PF13555.1 62 0.00067 11.6 0.0 1 1 2.3e-05 0.0016 10.4 0.0 19 43 157 178 145 188 0.75 # 21554 # 22549 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 1_29 - 332 Sigma54_activat PF00158.21 168 5.7e-06 18.2 0.0 1 1 1.6e-07 1e-05 17.4 0.0 14 54 150 190 138 213 0.82 # 21554 # 22549 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 1_29 - 332 MMR_HSR1 PF01926.18 116 0.00029 13.2 0.0 1 1 7.1e-06 0.00048 12.5 0.0 2 41 161 205 160 310 0.84 # 21554 # 22549 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 1_29 - 332 DUF258 PF03193.11 161 7.4e-05 14.3 0.0 1 1 2e-06 0.00014 13.5 0.0 29 61 151 184 129 224 0.81 # 21554 # 22549 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 2_23 - 510 TraG-D_C PF12696.2 128 9.1e-22 69.7 0.0 1 1 2.2e-23 1.5e-21 69.0 0.0 1 127 350 471 350 472 0.80 # 13769 # 15298 # 1 # ID=2_23;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.439 1_29 - 332 AAA_33 PF13671.1 143 0.00025 13.3 0.0 1 1 5.9e-06 0.0004 12.6 0.0 2 26 161 188 160 256 0.81 # 21554 # 22549 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 3_1 - 265 2-Hacid_dh_C PF02826.14 178 0.0002 12.9 0.1 1 1 5.6e-06 0.00038 12.0 0.1 33 77 184 229 172 240 0.82 # 109 # 903 # -1 # ID=3_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.567 2_25 - 502 AAA_30 PF13604.1 196 3.7e-21 67.9 1.2 1 1 1.1e-21 2.5e-20 65.2 0.9 110 192 1 83 1 86 0.94 # 17028 # 18533 # 1 # ID=2_25;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.521 2_24 - 578 AAA_30 PF13604.1 196 4.8e-16 51.2 0.2 1 1 2.1e-17 4.8e-16 51.2 0.2 1 63 477 539 477 543 0.96 # 15298 # 17031 # 1 # ID=2_24;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.535 1_29 - 332 AAA_30 PF13604.1 196 0.0001 14.3 0.1 1 2 7.1e-05 0.0016 10.4 0.1 11 51 151 190 145 197 0.80 # 21554 # 22549 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 1_29 - 332 AAA_30 PF13604.1 196 0.0001 14.3 0.1 2 2 0.035 0.79 1.6 0.0 121 178 204 258 191 272 0.77 # 21554 # 22549 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 1_29 - 332 FtsK_SpoIIIE PF01580.13 205 5.8e-07 21.5 0.0 1 1 5.1e-08 1.1e-06 20.5 0.0 38 64 158 184 139 191 0.81 # 21554 # 22549 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 1_22 - 867 FtsK_SpoIIIE PF01580.13 205 7.9e-06 17.8 0.0 1 1 8.1e-07 1.8e-05 16.6 0.0 21 62 462 515 445 522 0.82 # 13919 # 16519 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.498 2_23 - 510 FtsK_SpoIIIE PF01580.13 205 0.00043 12.1 0.0 1 1 3.4e-05 0.00076 11.3 0.0 39 59 124 147 95 153 0.78 # 13769 # 15298 # 1 # ID=2_23;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.439 3_1 - 265 Met_10 PF02475.11 200 5.2e-05 15.2 0.0 1 1 1.2e-06 8.3e-05 14.6 0.0 98 143 183 229 178 256 0.80 # 109 # 903 # -1 # ID=3_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.567 1_29 - 332 ABC_tran PF00005.22 137 1e-06 21.4 0.0 1 1 5e-08 1.7e-06 20.8 0.0 6 45 153 192 150 257 0.87 # 21554 # 22549 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 1_22 - 867 ABC_tran PF00005.22 137 0.00045 12.9 0.0 1 1 4.6e-05 0.0015 11.2 0.0 14 38 494 518 481 550 0.83 # 13919 # 16519 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.498 1_29 - 332 ATP-synt_ab PF00006.20 215 0.00036 12.4 0.0 1 1 8.8e-06 0.00059 11.7 0.0 16 62 159 205 151 247 0.86 # 21554 # 22549 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 1_29 - 332 AAA_19 PF13245.1 76 0.00043 12.4 0.1 1 1 1.4e-05 0.00093 11.3 0.1 5 48 153 191 149 224 0.78 # 21554 # 22549 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 1_22 - 867 AAA_10 PF12846.2 304 1.6e-35 115.3 0.1 1 1 2.4e-36 5.3e-35 113.6 0.0 2 292 492 772 491 780 0.84 # 13919 # 16519 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.498 2_23 - 510 AAA_10 PF12846.2 304 3.6e-07 22.2 0.1 1 2 2.1e-05 0.00046 12.0 0.1 3 41 128 166 126 177 0.92 # 13769 # 15298 # 1 # ID=2_23;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.439 2_23 - 510 AAA_10 PF12846.2 304 3.6e-07 22.2 0.1 2 2 0.00034 0.0075 8.0 0.0 214 286 339 414 307 431 0.75 # 13769 # 15298 # 1 # ID=2_23;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.439 1_29 - 332 AAA_10 PF12846.2 304 0.00018 13.3 0.0 1 1 1.2e-05 0.00027 12.7 0.0 3 29 160 185 158 233 0.81 # 21554 # 22549 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 1_29 - 332 ResIII PF04851.10 184 4.1e-06 19.0 0.0 1 1 9.8e-08 6.5e-06 18.4 0.0 22 61 148 196 104 202 0.81 # 21554 # 22549 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 2_25 - 502 Viral_helicase1 PF01443.13 234 2.1e-10 32.8 0.7 1 1 9.3e-12 6.2e-10 31.3 0.5 157 234 241 322 194 322 0.74 # 17028 # 18533 # 1 # ID=2_25;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.521 1_29 - 332 DUF2075 PF09848.4 352 6.1e-05 14.4 0.0 1 1 1.3e-06 8.7e-05 13.9 0.0 1 32 158 187 158 216 0.76 # 21554 # 22549 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 1_29 - 332 DEAD PF00270.24 169 2e-06 19.7 0.0 1 1 5.7e-08 3.8e-06 18.8 0.0 13 70 157 211 144 242 0.78 # 21554 # 22549 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 2_23 - 510 TrwB_AAD_bind PF10412.4 386 7e-119 389.1 0.0 1 1 3.7e-120 8.3e-119 388.9 0.0 1 385 112 490 112 491 0.95 # 13769 # 15298 # 1 # ID=2_23;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.439 1_22 - 867 TrwB_AAD_bind PF10412.4 386 6.2e-07 20.6 1.6 1 2 1.5e-06 3.3e-05 14.9 0.0 16 51 492 527 484 536 0.92 # 13919 # 16519 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.498 1_22 - 867 TrwB_AAD_bind PF10412.4 386 6.2e-07 20.6 1.6 2 2 0.0042 0.094 3.5 0.0 102 168 741 806 720 812 0.79 # 13919 # 16519 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.498 1_29 - 332 TrwB_AAD_bind PF10412.4 386 9.2e-06 16.8 0.1 1 1 6.4e-07 1.4e-05 16.1 0.1 14 49 157 191 150 202 0.81 # 21554 # 22549 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 1_29 - 332 Sigma54_activ_2 PF14532.1 138 1.6e-06 20.6 0.0 1 1 5e-08 3.4e-06 19.5 0.0 14 65 151 202 145 212 0.92 # 21554 # 22549 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 2_23 - 510 T4SS-DNA_transf PF02534.9 469 3.6e-12 37.8 0.0 1 1 7.9e-14 5.3e-12 37.3 0.0 263 426 313 472 297 500 0.74 # 13769 # 15298 # 1 # ID=2_23;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.439 1_29 - 332 Pox_A32 PF04665.7 241 6.7e-05 14.6 0.0 1 1 1.7e-06 0.00011 13.8 0.0 12 46 157 191 150 210 0.85 # 21554 # 22549 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 2_24 - 578 PIF1 PF05970.9 364 3.4e-06 18.5 0.2 1 1 1.4e-07 9.3e-06 17.1 0.0 2 60 478 532 477 539 0.90 # 15298 # 17031 # 1 # ID=2_24;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.535 1_29 - 332 GTP_EFTU PF00009.22 188 0.00015 13.6 0.2 1 1 3.5e-06 0.00023 12.9 0.2 2 32 157 187 156 205 0.83 # 21554 # 22549 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 1_29 - 332 RNA_helicase PF00910.17 107 1.3e-05 17.7 0.1 1 2 3.5e-06 0.00023 13.7 0.0 1 25 161 185 161 242 0.75 # 21554 # 22549 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 1_29 - 332 RNA_helicase PF00910.17 107 1.3e-05 17.7 0.1 2 2 0.027 1.8 1.2 0.1 69 100 290 322 281 328 0.78 # 21554 # 22549 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 1_29 - 332 UPF0079 PF02367.12 123 4.1e-06 18.8 0.0 1 1 1.2e-07 8.2e-06 17.8 0.0 9 45 152 188 145 193 0.85 # 21554 # 22549 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 3_1 - 265 TrkA_N PF02254.13 116 3e-05 16.4 0.0 1 1 7.7e-07 5.2e-05 15.6 0.0 1 45 190 236 190 246 0.83 # 109 # 903 # -1 # ID=3_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.567 1_29 - 332 Myosin_head PF00063.16 689 0.00011 12.7 0.0 1 1 2.2e-06 0.00015 12.2 0.0 84 110 157 183 147 209 0.90 # 21554 # 22549 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 1_29 - 332 NACHT PF05729.7 166 6e-05 15.1 0.0 1 1 1.9e-06 0.00013 14.0 0.0 1 27 159 185 159 188 0.90 # 21554 # 22549 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 2_25 - 502 Herpes_Helicase PF02689.9 819 0.00012 12.2 0.0 1 1 3.5e-06 0.00023 11.3 0.0 739 782 273 317 254 338 0.80 # 17028 # 18533 # 1 # ID=2_25;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.521 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/3acbfd55-e0e9-4675-a259-e055ca175a97 # Target file: checkm_output/bins/pm519/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm519/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/3acbfd55-e0e9-4675-a259-e055ca175a97 checkm_output/bins/pm519/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 17:06:53 2020 # [ok]